Wall clock time and date at job start Mon Mar 30 2020 18:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37099 * 120.00044 * 2 1 4 4 H 1.08003 * 119.99622 * 165.74794 * 3 2 1 5 5 C 1.38942 * 120.00205 * 345.74843 * 3 2 1 6 6 N 1.31419 * 120.00227 * 10.03832 * 5 3 2 7 7 Si 1.86797 * 120.00289 * 190.03845 * 5 3 2 8 8 H 1.48506 * 109.47156 * 89.99696 * 7 5 3 9 9 H 1.48499 * 109.47252 * 209.99838 * 7 5 3 10 10 H 1.48505 * 109.46951 * 330.00277 * 7 5 3 11 11 C 1.34782 * 119.99900 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99908 * 3.58392 * 11 2 1 13 13 C 1.50693 * 119.99890 * 183.59158 * 11 2 1 14 14 H 1.09007 * 109.49841 * 308.45111 * 13 11 2 15 15 C 1.53122 * 109.49916 * 188.38882 * 13 11 2 16 16 C 1.53279 * 109.70220 * 170.12372 * 15 13 11 17 17 N 1.46475 * 108.69335 * 50.77234 * 16 15 13 18 18 C 1.34407 * 128.44268 * 162.67331 * 17 16 15 19 19 N 1.30787 * 108.54992 * 180.19072 * 18 17 16 20 20 C 1.34429 * 109.32284 * 359.93886 * 19 18 17 21 21 C 1.33862 * 107.79689 * 0.22775 * 20 19 18 22 22 C 1.50715 * 128.68049 * 180.49997 * 21 20 19 23 23 H 1.09001 * 109.47306 * 185.47548 * 1 2 3 24 24 H 1.09006 * 109.47186 * 305.46800 * 1 2 3 25 25 H 1.09001 * 109.47292 * 65.46747 * 1 2 3 26 26 H 0.96989 * 120.00182 * 179.97438 * 6 5 3 27 27 H 1.09004 * 109.42776 * 50.05432 * 15 13 11 28 28 H 1.09000 * 109.42821 * 290.19969 * 15 13 11 29 29 H 1.08996 * 109.60270 * 291.00594 * 16 15 13 30 30 H 1.09007 * 109.59767 * 170.52727 * 16 15 13 31 31 H 1.07998 * 125.72202 * 0.23666 * 18 17 16 32 32 H 1.07999 * 126.09870 * 179.97438 * 20 19 18 33 33 H 1.08999 * 109.87531 * 44.10224 * 22 21 20 34 34 H 1.08991 * 109.59500 * 283.44187 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2056 1.2016 0.2303 5 6 1.4879 2.3721 -0.2962 6 7 0.1766 2.3880 -0.3820 7 14 2.4609 3.9425 -0.5726 8 1 2.8046 4.0651 -2.0121 9 1 1.6434 5.1108 -0.1576 10 1 3.7082 3.9001 0.2322 11 6 2.1389 -1.1673 -0.0005 12 8 1.5341 -2.2166 -0.0667 13 6 3.6436 -1.1686 0.0812 14 1 4.0500 -0.5047 -0.6819 15 6 4.1666 -2.5896 -0.1466 16 6 5.6903 -2.5594 -0.3100 17 7 6.2673 -1.8063 0.8060 18 6 7.5403 -1.7952 1.2371 19 7 7.6250 -0.9891 2.2636 20 6 6.4142 -0.4626 2.5168 21 6 5.5548 -0.9637 1.6211 22 6 4.0817 -0.6832 1.4699 23 1 -0.3634 -1.0230 0.0981 24 1 -0.3634 0.5963 0.8370 25 1 -0.3634 0.4267 -0.9349 26 1 -0.2859 3.2151 -0.5884 27 1 3.7133 -3.0026 -1.0477 28 1 3.9057 -3.2133 0.7084 29 1 5.9476 -2.0733 -1.2510 30 1 6.0790 -3.5778 -0.3035 31 1 8.3565 -2.3570 0.8075 32 1 6.1765 0.2364 3.3050 33 1 3.8971 0.3872 1.5610 34 1 3.5266 -1.2193 2.2395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116348077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:08 Heat of formation + Delta-G solvation = 18.673770 kcal Electronic energy + Delta-G solvation = -18582.741283 eV Core-core repulsion = 15709.300686 eV Total energy + Delta-G solvation = -2873.440597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.22326 -40.67505 -37.30232 -36.64914 -34.06315 -33.32869 -31.38465 -29.43780 -27.97762 -26.56499 -25.25955 -23.31468 -22.32664 -20.99267 -20.02260 -18.87646 -18.14929 -17.76687 -16.72714 -16.21501 -16.05943 -15.94676 -15.00012 -14.91642 -14.84388 -14.59527 -14.48427 -14.00340 -13.48900 -13.41756 -13.03915 -12.87073 -12.74300 -12.46517 -12.26348 -12.08411 -11.98789 -11.82771 -11.02639 -10.94709 -10.38010 -10.31265 -9.90746 -9.25480 -8.26491 -5.92171 1.17514 1.40504 1.46817 1.57275 1.95604 1.96598 2.22931 2.26235 2.90628 3.11520 3.59153 3.68994 3.86408 3.87963 4.02518 4.26913 4.30704 4.38525 4.53240 4.61025 4.78154 4.79716 4.86892 4.96591 5.05470 5.15076 5.23185 5.41685 5.43025 5.52114 5.78359 5.80372 6.39433 6.41081 7.08476 7.14866 7.56372 7.95351 8.69922 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.007989 C = 0.006386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.377128 B = 3504.080763 C = 4383.463314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.456 5.456 3 C -0.350 4.350 4 H 0.120 0.880 5 C -0.007 4.007 6 N -0.900 5.900 7 Si 0.987 3.013 8 H -0.275 1.275 9 H -0.283 1.283 10 H -0.256 1.256 11 C 0.446 3.554 12 O -0.642 6.642 13 C -0.082 4.082 14 H 0.091 0.909 15 C -0.106 4.106 16 C 0.109 3.891 17 N -0.456 5.456 18 C 0.188 3.812 19 N -0.535 5.535 20 C -0.045 4.045 21 C -0.023 4.023 22 C -0.028 4.028 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.245 0.755 32 H 0.173 0.827 33 H 0.094 0.906 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.122 -4.905 -0.782 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.172 5.172 3 C -0.477 4.477 4 H 0.137 0.863 5 C -0.208 4.208 6 N -0.539 5.539 7 Si 0.811 3.189 8 H -0.200 1.200 9 H -0.209 1.209 10 H -0.180 1.180 11 C 0.235 3.765 12 O -0.532 6.532 13 C -0.104 4.104 14 H 0.110 0.890 15 C -0.144 4.144 16 C -0.012 4.012 17 N -0.140 5.140 18 C -0.094 4.094 19 N -0.254 5.254 20 C -0.192 4.192 21 C -0.138 4.138 22 C -0.067 4.067 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.146 0.854 31 H 0.261 0.739 32 H 0.190 0.810 33 H 0.112 0.888 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.306 -5.152 -0.532 12.436 hybrid contribution -1.104 0.875 -0.471 1.485 sum 10.203 -4.277 -1.003 11.108 Atomic orbital electron populations 1.21320 0.80705 0.96806 1.02115 1.43961 1.06134 1.05674 1.61479 1.20226 0.95753 0.83817 1.47921 0.86296 1.26207 0.96540 1.02620 0.95474 1.70305 1.08080 1.28759 1.46781 0.84998 0.78387 0.76746 0.78793 1.20031 1.20893 1.18020 1.20536 0.90526 0.82877 0.82526 1.90488 1.71101 1.32352 1.59228 1.21015 0.91616 0.98870 0.98868 0.89044 1.21586 0.93767 0.95086 1.03941 1.22252 0.92642 0.98355 0.87914 1.45638 1.09009 1.34042 1.25295 1.25531 0.87064 1.01721 0.95070 1.70449 1.24840 1.13436 1.16680 1.22011 0.89002 1.05437 1.02738 1.21127 0.95292 1.00054 0.97324 1.20079 0.88114 1.02821 0.95673 0.94958 0.93229 0.92688 0.92058 0.89113 0.91893 0.87739 0.85380 0.73918 0.80971 0.88817 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.78 8.87 127.77 1.13 7.92 16 2 N -0.46 -22.73 3.03 -658.89 -1.99 -24.72 16 3 C -0.35 -16.91 8.64 84.04 0.73 -16.19 16 4 H 0.12 5.28 4.63 -2.91 -0.01 5.27 16 5 C -0.01 -0.33 5.46 84.92 0.46 0.14 16 6 N -0.90 -46.24 9.60 21.66 0.21 -46.03 16 7 Si 0.99 38.46 29.56 68.60 2.03 40.49 16 8 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 9 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 11 C 0.45 20.66 6.90 87.65 0.61 21.26 16 12 O -0.64 -32.89 15.28 -3.07 -0.05 -32.94 16 13 C -0.08 -2.95 1.69 -11.34 -0.02 -2.97 16 14 H 0.09 3.27 7.50 -2.38 -0.02 3.25 16 15 C -0.11 -3.03 4.59 30.73 0.14 -2.89 16 16 C 0.11 2.17 7.00 86.48 0.61 2.78 16 17 N -0.46 -11.62 3.13 -514.84 -1.61 -13.23 16 18 C 0.19 4.48 12.66 180.38 2.28 6.76 16 19 N -0.53 -16.48 11.27 -200.96 -2.26 -18.75 16 20 C -0.05 -1.44 11.84 83.30 0.99 -0.45 16 21 C -0.02 -0.71 6.57 40.73 0.27 -0.44 16 22 C -0.03 -0.97 5.23 30.02 0.16 -0.81 16 23 H 0.03 1.60 6.94 -2.39 -0.02 1.58 16 24 H 0.05 2.57 7.34 -2.38 -0.02 2.55 16 25 H 0.05 2.89 6.85 -2.39 -0.02 2.88 16 26 H 0.27 13.12 8.31 -92.72 -0.77 12.35 16 27 H 0.09 2.63 7.91 -2.38 -0.02 2.61 16 28 H 0.06 1.96 8.11 -2.39 -0.02 1.94 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.24 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.17 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.09 3.41 5.86 -2.39 -0.01 3.40 16 34 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 Total: -1.00 -64.07 276.60 4.78 -59.29 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.11 Total: 20.79 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 7.35 Total: 15.10 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -5.66 Total: -102.73 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.05 Total: -32.94 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -64.07 4.78 -59.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116348077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.965 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds