Wall clock time and date at job start Mon Mar 30 2020 18:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47168 * 2 1 4 4 C 1.50701 * 109.46738 * 240.00354 * 2 1 3 5 5 H 1.07997 * 120.00043 * 239.99425 * 4 2 1 6 6 C 1.37877 * 120.00116 * 60.00265 * 4 2 1 7 7 N 1.31509 * 120.00199 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00000 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47160 * 179.97438 * 8 6 4 10 10 H 1.48507 * 109.46840 * 299.99539 * 8 6 4 11 11 H 1.48501 * 109.46952 * 59.99455 * 8 6 4 12 12 C 1.50694 * 109.47272 * 120.00526 * 2 1 3 13 13 O 1.21273 * 120.00290 * 34.43706 * 12 2 1 14 14 N 1.34780 * 119.99804 * 214.44142 * 12 2 1 15 15 C 1.46748 * 126.83942 * 5.19512 * 14 12 2 16 16 C 1.50795 * 107.50068 * 180.02562 * 15 14 12 17 17 C 1.40135 * 142.77231 * 179.97438 * 16 15 14 18 18 N 1.30770 * 108.19813 * 180.02562 * 17 16 15 19 19 N 1.40023 * 108.20671 * 0.02562 * 18 17 16 20 20 C 1.46505 * 126.04859 * 179.97438 * 19 18 17 21 21 C 1.34999 * 109.31802 * 0.02562 * 16 15 14 22 22 C 1.46748 * 126.83926 * 184.88932 * 14 12 2 23 23 H 1.09000 * 109.47356 * 174.08475 * 1 2 3 24 24 H 1.09004 * 109.47068 * 294.08340 * 1 2 3 25 25 H 1.09004 * 109.47920 * 54.08175 * 1 2 3 26 26 H 0.97000 * 120.00462 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.84412 * 299.49676 * 15 14 12 28 28 H 1.09001 * 109.83968 * 60.40991 * 15 14 12 29 29 H 1.08001 * 125.90022 * 0.02562 * 17 16 15 30 30 H 1.09003 * 109.46764 * 270.02118 * 20 19 18 31 31 H 1.08995 * 109.47446 * 30.01908 * 20 19 18 32 32 H 1.08997 * 109.47294 * 150.02409 * 20 19 18 33 33 H 1.08997 * 109.84484 * 299.47873 * 22 14 12 34 34 H 1.08998 * 109.84793 * 60.51178 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1193 -4.0081 9 1 1.8267 -0.4197 -5.2205 10 1 3.8073 -1.1187 -4.0079 11 1 1.8278 -2.5196 -4.0083 12 6 2.0323 -0.7105 1.2303 13 8 1.4178 -1.6551 1.6785 14 7 3.1645 -0.2960 1.8327 15 6 3.9639 0.8848 1.4864 16 6 5.1339 0.9350 2.4364 17 6 6.2767 1.6783 2.7609 18 7 6.8699 1.0956 3.7702 19 7 6.1252 -0.0372 4.1207 20 6 6.4399 -0.9754 5.2011 21 6 5.0647 -0.1121 3.2858 22 6 3.8399 -0.9323 2.9696 23 1 -0.3634 -1.0222 -0.1059 24 1 -0.3633 0.4194 0.9382 25 1 -0.3635 0.6028 -0.8322 26 1 0.7086 1.1615 -3.4843 27 1 4.3236 0.8004 0.4609 28 1 3.3591 1.7853 1.5932 29 1 6.6099 2.5771 2.2634 30 1 7.0727 -1.7747 4.8154 31 1 6.9648 -0.4489 5.9981 32 1 5.5162 -1.4007 5.5935 33 1 3.1729 -0.9541 3.8313 34 1 4.1363 -1.9469 2.7034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118792558.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:32 Heat of formation + Delta-G solvation = 64.835038 kcal Electronic energy + Delta-G solvation = -18058.985847 eV Core-core repulsion = 15187.546952 eV Total energy + Delta-G solvation = -2871.438894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.67511 -38.90226 -36.13318 -33.79685 -33.29778 -30.81733 -29.91933 -28.37021 -26.48043 -25.22794 -24.55968 -21.95691 -20.58832 -19.81369 -18.44533 -16.74698 -16.51527 -16.05931 -15.58147 -15.20115 -14.77238 -14.46700 -13.95943 -13.22318 -13.20070 -12.83506 -12.75265 -12.49947 -12.12637 -11.86381 -11.62007 -11.54044 -11.00375 -10.93748 -10.81860 -10.59041 -10.26019 -10.15207 -9.36531 -9.06694 -8.76208 -8.67645 -8.41696 -7.83198 -6.11451 -4.18723 1.75514 2.20891 2.74474 3.29292 3.33454 3.34839 3.47983 3.62447 4.17181 4.39437 4.54245 4.83275 4.97718 5.08418 5.20999 5.22088 5.49616 5.57899 5.65070 5.95585 6.02560 6.10513 6.25455 6.59715 6.68137 6.83788 6.89007 6.96574 7.07252 7.54251 7.61863 7.73908 7.92118 8.10365 8.25140 8.80560 9.06072 9.46233 10.95209 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.005878 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.013771 B = 4762.431992 C = 5130.422607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.039 3.961 3 H 0.047 0.953 4 C -0.510 4.510 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.554 3.446 13 O -0.556 6.556 14 N -0.620 5.620 15 C 0.187 3.813 16 C -0.257 4.257 17 C 0.083 3.917 18 N -0.291 5.291 19 N -0.354 5.354 20 C 0.101 3.899 21 C 0.048 3.952 22 C 0.189 3.811 23 H 0.040 0.960 24 H 0.010 0.990 25 H 0.086 0.914 26 H 0.264 0.736 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.189 0.811 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.108 0.925 11.095 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.018 3.982 3 H 0.065 0.935 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.348 3.652 13 O -0.432 6.432 14 N -0.357 5.357 15 C 0.063 3.937 16 C -0.269 4.269 17 C -0.103 4.103 18 N -0.111 5.111 19 N -0.137 5.137 20 C -0.040 4.040 21 C -0.081 4.081 22 C 0.063 3.937 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.206 0.794 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.603 0.426 12.067 15.428 hybrid contribution -0.070 -0.476 -1.245 1.334 sum 9.533 -0.050 10.823 14.423 Atomic orbital electron populations 1.21625 0.95833 1.01239 0.99350 1.18888 0.94622 0.96406 0.88255 0.93473 1.20676 1.32342 1.12702 0.89148 0.92436 1.24878 0.94726 0.94884 0.98910 1.69875 1.35931 1.22551 1.23939 0.86528 0.79194 0.79850 0.81731 1.21084 1.20125 1.20104 1.21852 0.76076 0.83447 0.83824 1.90556 1.56625 1.30024 1.66025 1.48351 1.26348 1.28196 1.32854 1.19565 0.88179 0.88733 0.97228 1.20998 1.01574 1.00078 1.04267 1.23236 0.92536 0.99841 0.94689 1.77418 1.18450 0.97543 1.17699 1.47826 1.17959 1.21408 1.26489 1.21889 1.02855 0.91221 0.88077 1.21417 0.92940 1.00015 0.93730 1.19446 0.87841 0.94799 0.91592 0.94052 0.97125 0.89499 0.92585 0.89519 0.90667 0.79436 0.90722 0.89260 0.89461 0.90324 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 8.44 37.15 0.31 -2.72 16 2 C 0.04 0.98 2.36 -92.93 -0.22 0.76 16 3 H 0.05 1.17 7.09 -51.93 -0.37 0.80 16 4 C -0.51 -13.77 8.55 -34.44 -0.29 -14.06 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -24.09 11.39 55.43 0.63 -23.46 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.55 12.91 6.81 -10.99 -0.07 12.84 16 13 O -0.56 -14.22 16.77 5.56 0.09 -14.13 16 14 N -0.62 -12.01 3.35 -175.95 -0.59 -12.60 16 15 C 0.19 3.17 6.07 -5.01 -0.03 3.14 16 16 C -0.26 -3.94 6.98 -105.01 -0.73 -4.67 16 17 C 0.08 1.12 12.03 -17.29 -0.21 0.91 16 18 N -0.29 -4.16 12.57 30.67 0.39 -3.77 16 19 N -0.35 -4.73 4.02 -63.88 -0.26 -4.98 16 20 C 0.10 0.86 11.47 59.85 0.69 1.54 16 21 C 0.05 0.71 7.66 -82.24 -0.63 0.08 16 22 C 0.19 3.02 6.95 -5.03 -0.03 2.99 16 23 H 0.04 1.05 8.04 -51.93 -0.42 0.64 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 2.25 6.25 -51.93 -0.32 1.93 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 29 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -31.80 292.08 -6.13 -37.92 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.45 Total: -1.73 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.32 Total: 2.54 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.17 Total: -44.81 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.80 -6.13 -37.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118792558.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.758 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds