Wall clock time and date at job start Mon Mar 30 2020 18:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46727 * 2 1 4 4 C 1.50699 * 109.46770 * 120.00023 * 2 1 3 5 5 O 1.21271 * 119.99947 * 120.00453 * 4 2 1 6 6 N 1.34774 * 120.00027 * 299.99727 * 4 2 1 7 7 C 1.46504 * 119.99990 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00235 * 180.02562 * 6 4 2 9 9 C 1.50709 * 109.47112 * 90.00169 * 8 6 4 10 10 H 1.08005 * 119.99524 * 0.02562 * 9 8 6 11 11 C 1.37869 * 120.00055 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00143 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00121 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46640 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47249 * 119.99758 * 13 11 9 16 16 H 1.48504 * 109.47392 * 240.00283 * 13 11 9 17 17 C 1.50696 * 109.46945 * 239.99791 * 2 1 3 18 18 C 1.38387 * 120.00645 * 324.98135 * 17 2 1 19 19 N 1.32127 * 119.99994 * 179.76858 * 18 17 2 20 20 C 1.32149 * 119.99872 * 0.50887 * 19 18 17 21 21 C 1.38346 * 120.00371 * 359.48627 * 20 19 18 22 22 N 1.32127 * 120.00024 * 144.99834 * 17 2 1 23 23 H 1.08994 * 109.47099 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47028 * 300.00173 * 1 2 3 25 25 H 1.09000 * 109.46876 * 60.00140 * 1 2 3 26 26 H 1.09003 * 109.47282 * 89.99880 * 7 6 4 27 27 H 1.09000 * 109.47071 * 209.99806 * 7 6 4 28 28 H 1.09000 * 109.47311 * 330.00052 * 7 6 4 29 29 H 1.09002 * 109.47400 * 210.00285 * 8 6 4 30 30 H 1.08999 * 109.47066 * 330.00801 * 8 6 4 31 31 H 0.97005 * 119.99747 * 180.02562 * 12 11 9 32 32 H 1.07999 * 119.99913 * 0.02562 * 18 17 2 33 33 H 1.08002 * 120.00163 * 179.77166 * 20 19 18 34 34 H 1.07999 * 120.00349 * 180.27731 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 0.8641 0.9409 2.5889 8 6 2.1954 -0.9402 3.6507 9 6 3.5228 -0.3561 4.0607 10 1 3.9585 0.4491 3.4877 11 6 4.1809 -0.8496 5.1672 12 7 3.6505 -1.8304 5.8646 13 14 5.8265 -0.1261 5.6749 14 1 6.2033 0.9569 4.7313 15 1 5.7210 0.4280 7.0486 16 1 6.8639 -1.1885 5.6480 17 6 2.0323 -0.7104 -1.2304 18 6 1.3377 -1.7958 -1.7349 19 7 1.7757 -2.4158 -2.8164 20 6 2.8826 -2.0057 -3.4104 21 6 3.5770 -0.9205 -2.9062 22 7 3.1362 -0.2973 -1.8275 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.1838 0.6427 2.6224 27 1 1.1218 1.4665 3.5084 28 1 1.0272 1.5997 1.7360 29 1 1.4774 -0.8150 4.4613 30 1 2.3170 -2.0014 3.4337 31 1 4.1134 -2.1773 6.6433 32 1 0.4353 -2.1335 -1.2470 33 1 3.2426 -2.5147 -4.2923 34 1 4.4792 -0.5826 -3.3943 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119563503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:38 Heat of formation + Delta-G solvation = 18.360323 kcal Electronic energy + Delta-G solvation = -18061.162446 eV Core-core repulsion = 15187.708257 eV Total energy + Delta-G solvation = -2873.454189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14357 -39.11642 -34.94700 -34.71168 -33.80207 -32.52226 -30.11002 -27.67974 -26.26094 -25.12221 -24.38256 -23.51422 -21.71194 -18.65001 -17.57956 -17.02411 -16.55623 -16.27750 -15.96482 -15.10293 -14.57285 -14.54638 -14.20038 -13.79044 -13.26986 -13.03027 -12.46532 -12.32094 -12.09384 -11.96239 -11.55654 -11.35292 -11.29396 -11.11883 -11.08319 -10.86483 -10.59814 -10.16451 -9.62169 -9.29426 -8.99007 -8.84318 -8.44523 -7.68790 -6.05284 -4.09842 0.84864 1.23368 3.29607 3.32821 3.37807 3.42776 3.61382 3.95153 4.14474 4.33393 4.44991 4.55388 4.72266 5.01785 5.09023 5.09842 5.29168 5.35814 5.40603 5.54850 5.62313 5.68195 5.78409 5.91428 6.03217 6.24982 6.40075 7.01438 7.34795 7.41360 7.50388 7.85971 7.91188 8.21887 8.35082 8.87810 9.03617 9.55397 11.02900 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.005911 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.045734 B = 4735.831634 C = 5224.839635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.065 4.065 3 H 0.113 0.887 4 C 0.516 3.484 5 O -0.536 6.536 6 N -0.598 5.598 7 C 0.079 3.921 8 C 0.245 3.755 9 C -0.526 4.526 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.119 3.881 18 C 0.065 3.935 19 N -0.438 5.438 20 C 0.036 3.964 21 C 0.053 3.947 22 N -0.432 5.432 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 5.180 -14.526 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.087 4.087 3 H 0.131 0.869 4 C 0.301 3.699 5 O -0.413 6.413 6 N -0.330 5.330 7 C -0.065 4.065 8 C 0.126 3.874 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.022 4.022 18 C -0.095 4.095 19 N -0.153 5.153 20 C -0.123 4.123 21 C -0.107 4.107 22 N -0.147 5.147 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.184 0.816 33 H 0.184 0.816 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.764 4.533 -14.408 16.549 hybrid contribution 1.119 0.398 0.405 1.254 sum -5.645 4.930 -14.003 15.883 Atomic orbital electron populations 1.22130 0.91895 1.03458 1.03960 1.20231 0.97388 1.01063 0.90064 0.86877 1.19883 0.81116 0.84993 0.83925 1.90693 1.37664 1.26815 1.86160 1.48081 1.49610 1.28230 1.07046 1.21837 0.93781 0.88141 1.02743 1.19322 0.94310 0.93716 0.80036 1.21475 1.04822 1.19023 1.11147 0.92386 1.24934 0.97966 0.94949 0.96274 1.69943 1.38998 1.26086 1.18396 0.86444 0.83735 0.79092 0.78185 1.19767 1.20906 1.20881 1.21584 0.91197 0.94148 0.95276 1.23518 1.00705 0.92453 0.92821 1.68431 1.12349 1.26944 1.07549 1.23696 0.92411 0.95730 1.00475 1.23714 1.00211 0.93850 0.92943 1.68201 1.10568 1.29205 1.06724 0.91590 0.89557 0.91525 0.93187 0.90669 0.92151 0.94791 0.93830 0.92762 0.81563 0.81584 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.26 37.16 0.31 -1.41 16 2 C -0.06 -0.99 2.25 -92.92 -0.21 -1.20 16 3 H 0.11 1.62 7.40 -51.93 -0.38 1.24 16 4 C 0.52 10.78 7.07 -10.99 -0.08 10.70 16 5 O -0.54 -13.86 15.61 5.56 0.09 -13.78 16 6 N -0.60 -12.49 2.86 -182.95 -0.52 -13.01 16 7 C 0.08 1.18 8.80 59.85 0.53 1.71 16 8 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 9 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 10 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 13 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 C 0.12 1.92 5.03 -82.41 -0.41 1.50 16 18 C 0.07 0.98 10.33 -17.37 -0.18 0.80 16 19 N -0.44 -6.45 10.50 -13.06 -0.14 -6.58 16 20 C 0.04 0.44 11.22 -17.38 -0.20 0.25 16 21 C 0.05 0.68 11.22 -17.37 -0.20 0.48 16 22 N -0.43 -7.07 10.42 -9.29 -0.10 -7.17 16 23 H 0.07 0.71 6.51 -51.93 -0.34 0.37 16 24 H 0.09 0.85 4.53 -51.93 -0.24 0.62 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 27 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.06 0.74 6.01 -51.93 -0.31 0.42 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.17 2.15 6.33 -52.49 -0.33 1.82 16 33 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 289.40 15.07 4.36 4.36 Total: -1.00 -35.98 289.40 -5.48 -41.45 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -4.00 Total: -1.83 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.88 Total: 5.49 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.02 Total: -52.81 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -35.98 -5.48 -41.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119563503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.815 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds