Wall clock time and date at job start Mon Mar 30 2020 18:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46727 * 2 1 4 4 C 1.50699 * 109.46770 * 120.00023 * 2 1 3 5 5 O 1.21271 * 119.99947 * 120.00453 * 4 2 1 6 6 N 1.34774 * 120.00027 * 299.99727 * 4 2 1 7 7 C 1.46504 * 119.99990 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00235 * 180.02562 * 6 4 2 9 9 C 1.50709 * 109.47112 * 90.00169 * 8 6 4 10 10 H 1.08005 * 119.99524 * 0.02562 * 9 8 6 11 11 C 1.37869 * 120.00055 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00143 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00121 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46640 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47249 * 119.99758 * 13 11 9 16 16 H 1.48504 * 109.47392 * 240.00283 * 13 11 9 17 17 C 1.50696 * 109.46945 * 239.99791 * 2 1 3 18 18 C 1.38387 * 120.00645 * 324.98135 * 17 2 1 19 19 N 1.32127 * 119.99994 * 179.76858 * 18 17 2 20 20 C 1.32149 * 119.99872 * 0.50887 * 19 18 17 21 21 C 1.38346 * 120.00371 * 359.48627 * 20 19 18 22 22 N 1.32127 * 120.00024 * 144.99834 * 17 2 1 23 23 H 1.08994 * 109.47099 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47028 * 300.00173 * 1 2 3 25 25 H 1.09000 * 109.46876 * 60.00140 * 1 2 3 26 26 H 1.09003 * 109.47282 * 89.99880 * 7 6 4 27 27 H 1.09000 * 109.47071 * 209.99806 * 7 6 4 28 28 H 1.09000 * 109.47311 * 330.00052 * 7 6 4 29 29 H 1.09002 * 109.47400 * 210.00285 * 8 6 4 30 30 H 1.08999 * 109.47066 * 330.00801 * 8 6 4 31 31 H 0.97005 * 119.99747 * 180.02562 * 12 11 9 32 32 H 1.07999 * 119.99913 * 0.02562 * 18 17 2 33 33 H 1.08002 * 120.00163 * 179.77166 * 20 19 18 34 34 H 1.07999 * 120.00349 * 180.27731 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 0.8641 0.9409 2.5889 8 6 2.1954 -0.9402 3.6507 9 6 3.5228 -0.3561 4.0607 10 1 3.9585 0.4491 3.4877 11 6 4.1809 -0.8496 5.1672 12 7 3.6505 -1.8304 5.8646 13 14 5.8265 -0.1261 5.6749 14 1 6.2033 0.9569 4.7313 15 1 5.7210 0.4280 7.0486 16 1 6.8639 -1.1885 5.6480 17 6 2.0323 -0.7104 -1.2304 18 6 1.3377 -1.7958 -1.7349 19 7 1.7757 -2.4158 -2.8164 20 6 2.8826 -2.0057 -3.4104 21 6 3.5770 -0.9205 -2.9062 22 7 3.1362 -0.2973 -1.8275 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.1838 0.6427 2.6224 27 1 1.1218 1.4665 3.5084 28 1 1.0272 1.5997 1.7360 29 1 1.4774 -0.8150 4.4613 30 1 2.3170 -2.0014 3.4337 31 1 4.1134 -2.1773 6.6433 32 1 0.4353 -2.1335 -1.2470 33 1 3.2426 -2.5147 -4.2923 34 1 4.4792 -0.5826 -3.3943 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119563503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:38 Heat of formation + Delta-G solvation = -8.583740 kcal Electronic energy + Delta-G solvation = -18062.330829 eV Core-core repulsion = 15187.708257 eV Total energy + Delta-G solvation = -2874.622571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.25020 -40.65732 -36.68901 -35.95411 -35.03481 -34.47348 -31.27848 -29.51131 -27.66193 -26.32994 -25.46382 -25.24912 -23.14004 -20.18058 -18.80291 -18.61343 -18.05666 -17.73315 -17.39633 -16.60610 -16.32590 -15.83449 -15.50619 -15.00848 -14.57050 -14.46435 -14.13055 -13.66608 -13.51117 -13.25730 -13.12026 -12.86766 -12.65475 -12.58687 -12.44176 -12.31784 -12.22183 -12.12963 -11.69081 -10.68040 -10.66579 -10.16636 -10.05474 -9.44688 -8.25014 -6.39573 -0.19613 0.15667 1.33811 1.36410 1.48181 1.76581 2.23546 2.39033 2.79781 3.02341 3.04675 3.34922 3.51856 3.62653 3.84969 4.05983 4.12088 4.35166 4.40806 4.47091 4.62182 4.67675 4.80674 4.88840 4.98651 5.00858 5.20802 5.28001 5.41593 5.53681 5.81363 6.03914 6.30495 6.66608 6.74316 6.80834 7.25014 7.42233 8.82187 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.005911 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.045734 B = 4735.831634 C = 5224.839635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.049 4.049 3 H 0.125 0.875 4 C 0.507 3.493 5 O -0.598 6.598 6 N -0.604 5.604 7 C 0.071 3.929 8 C 0.259 3.741 9 C -0.543 4.543 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.269 1.269 15 H -0.265 1.265 16 H -0.283 1.283 17 C 0.093 3.907 18 C 0.053 3.947 19 N -0.458 5.458 20 C 0.044 3.956 21 C 0.048 3.952 22 N -0.465 5.465 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.030 0.970 30 H -0.004 1.004 31 H 0.267 0.733 32 H 0.178 0.822 33 H 0.209 0.791 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 6.756 -15.934 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.072 4.072 3 H 0.142 0.858 4 C 0.295 3.705 5 O -0.480 6.480 6 N -0.334 5.334 7 C -0.071 4.071 8 C 0.138 3.862 9 C -0.581 4.581 10 H 0.068 0.932 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.193 1.193 15 H -0.190 1.190 16 H -0.209 1.209 17 C -0.047 4.047 18 C -0.105 4.105 19 N -0.173 5.173 20 C -0.116 4.116 21 C -0.112 4.112 22 N -0.180 5.180 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.048 0.952 30 H 0.015 0.985 31 H 0.076 0.924 32 H 0.195 0.805 33 H 0.225 0.775 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.938 6.159 -15.804 18.326 hybrid contribution 1.182 -0.140 0.755 1.409 sum -5.756 6.019 -15.049 17.200 Atomic orbital electron populations 1.22175 0.88433 1.04142 1.06070 1.20175 1.00037 1.00277 0.86710 0.85753 1.20921 0.79923 0.84379 0.85269 1.90647 1.40442 1.29700 1.87177 1.48083 1.50065 1.29528 1.05734 1.22204 0.94532 0.86391 1.03928 1.18780 0.93790 0.91658 0.81994 1.21731 1.06033 1.19016 1.11368 0.93159 1.25838 1.01752 0.95249 0.96254 1.70052 1.40647 1.27165 1.18886 0.85393 0.78782 0.78267 0.78524 1.19315 1.19028 1.20866 1.21701 0.91883 0.95160 0.95912 1.23712 1.01311 0.92302 0.93207 1.68482 1.13618 1.27371 1.07834 1.24412 0.91139 0.95140 1.00938 1.24385 1.01122 0.93649 0.92016 1.68181 1.10976 1.30656 1.08203 0.91710 0.88161 0.88571 0.89753 0.91467 0.88743 0.95226 0.98542 0.92358 0.80506 0.77451 0.77961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.26 71.98 0.59 -2.33 16 2 C -0.05 -1.46 2.25 -12.29 -0.03 -1.49 16 3 H 0.12 3.33 7.40 -2.39 -0.02 3.31 16 4 C 0.51 21.52 7.07 87.66 0.62 22.14 16 5 O -0.60 -32.33 15.61 -3.00 -0.05 -32.38 16 6 N -0.60 -25.47 2.86 -851.12 -2.43 -27.90 16 7 C 0.07 2.00 8.80 127.77 1.12 3.12 16 8 C 0.26 14.10 5.16 85.64 0.44 14.54 16 9 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 10 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 11 C 0.01 0.47 5.46 84.65 0.46 0.93 16 12 N -0.93 -56.70 13.29 21.44 0.28 -56.41 16 13 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 17 C 0.09 2.95 5.03 42.55 0.21 3.16 16 18 C 0.05 1.57 10.33 84.68 0.87 2.44 16 19 N -0.46 -12.91 10.50 -195.22 -2.05 -14.96 16 20 C 0.04 0.97 11.22 84.67 0.95 1.92 16 21 C 0.05 1.16 11.22 84.67 0.95 2.11 16 22 N -0.46 -14.78 10.42 -183.30 -1.91 -16.69 16 23 H 0.06 1.29 6.51 -2.39 -0.02 1.27 16 24 H 0.10 1.63 4.53 -2.39 -0.01 1.62 16 25 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.82 6.95 -2.39 -0.02 1.80 16 27 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 28 H 0.09 2.02 6.01 -2.39 -0.01 2.01 16 29 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 30 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 31 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 32 H 0.18 4.52 6.33 -2.91 -0.02 4.50 16 33 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -82.18 289.40 3.43 -78.75 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.11 Total: 6.95 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.44 Total: 14.90 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -6.11 Total: -115.96 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.05 Total: -32.38 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -82.18 3.43 -78.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119563503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.171 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds