Wall clock time and date at job start Mon Mar 30 2020 18:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50709 * 119.99854 * 2 1 4 4 C 1.50695 * 120.00333 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47677 * 94.48725 * 4 2 1 6 6 N 1.40586 * 127.38600 * 276.93456 * 5 4 2 7 7 N 1.28907 * 106.83582 * 179.97438 * 6 5 4 8 8 N 1.28421 * 110.35508 * 359.74202 * 7 6 5 9 9 C 1.31567 * 110.49576 * 0.42629 * 8 7 6 10 10 N 1.38225 * 126.45857 * 179.85214 * 9 8 7 11 11 C 1.36935 * 119.99879 * 186.45031 * 10 9 8 12 12 H 1.08002 * 119.99305 * 250.95896 * 11 10 9 13 13 C 1.38795 * 120.00322 * 71.24130 * 11 10 9 14 14 N 1.31567 * 120.00042 * 178.14541 * 13 11 10 15 15 Si 1.86795 * 120.00010 * 358.13671 * 13 11 10 16 16 H 1.48499 * 109.46996 * 94.59219 * 15 13 11 17 17 H 1.48505 * 109.47217 * 214.59047 * 15 13 11 18 18 H 1.48504 * 109.47496 * 334.59294 * 15 13 11 19 19 C 1.46503 * 120.00172 * 6.44258 * 10 9 8 20 20 C 1.52998 * 117.50017 * 183.21190 * 19 10 9 21 21 C 1.52994 * 117.49492 * 114.58947 * 19 10 9 22 22 H 1.07997 * 119.99571 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.00238 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47429 * 273.01333 * 3 2 1 25 25 H 1.08997 * 109.46751 * 33.01799 * 3 2 1 26 26 H 1.09002 * 109.46575 * 153.01269 * 3 2 1 27 27 H 1.09005 * 109.46874 * 334.48914 * 4 2 1 28 28 H 1.09001 * 109.47138 * 214.49317 * 4 2 1 29 29 H 0.96993 * 120.00256 * 180.02562 * 14 13 11 30 30 H 1.08999 * 115.54887 * 328.92605 * 19 10 9 31 31 H 1.09004 * 117.49612 * 0.02562 * 20 19 10 32 32 H 1.08993 * 117.49859 * 145.02358 * 20 19 10 33 33 H 1.09002 * 117.50213 * 214.98180 * 21 19 10 34 34 H 1.09004 * 117.50353 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 7 2.4014 -1.6734 -1.3777 6 7 1.5804 -2.3289 -2.3119 7 7 2.2709 -2.4533 -3.3933 8 7 3.4381 -1.9403 -3.2395 9 6 3.5714 -1.4548 -2.0240 10 7 4.6923 -0.8335 -1.5060 11 6 4.7358 -0.4943 -0.1801 12 1 4.6835 0.5437 0.1137 13 6 4.8531 -1.4839 0.7860 14 7 4.9317 -1.1558 2.0577 15 14 4.8992 -3.2816 0.2807 16 1 6.3110 -3.7235 0.1516 17 1 4.2156 -4.1033 1.3117 18 1 4.2075 -3.4473 -1.0230 19 6 5.8337 -0.5380 -2.3756 20 6 7.0733 0.0822 -1.7279 21 6 6.1708 0.9337 -2.6230 22 1 -0.5399 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 2.1984 1.6469 -1.0262 25 1 1.4989 2.0506 0.5600 26 1 3.0383 1.1619 0.4664 27 1 1.4420 -2.0836 0.4417 28 1 2.9788 -1.1964 0.5814 29 1 5.0140 -1.8473 2.7328 30 1 5.9909 -1.2355 -3.1983 31 1 7.0398 0.2699 -0.6547 32 1 8.0465 -0.2074 -2.1243 33 1 6.5503 1.2045 -3.6083 34 1 5.5437 1.6821 -2.1384 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119718727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:44 Heat of formation + Delta-G solvation = 186.105398 kcal Electronic energy + Delta-G solvation = -19282.372211 eV Core-core repulsion = 16448.484746 eV Total energy + Delta-G solvation = -2833.887466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.72898 -37.89779 -36.26442 -34.12913 -32.59796 -32.20698 -29.78165 -27.02294 -26.77815 -24.86529 -22.18396 -21.91492 -21.62145 -20.08826 -18.59436 -17.70048 -16.27571 -16.07278 -15.56894 -15.07574 -14.36340 -14.06787 -13.83741 -13.58817 -13.17665 -12.65413 -12.46511 -12.04862 -11.82019 -11.62512 -11.46583 -11.17890 -10.98639 -10.90573 -10.65793 -10.47189 -10.16010 -9.93221 -9.66135 -9.50488 -9.30717 -8.95150 -8.72295 -7.09315 -6.73433 -4.82302 2.20079 2.37569 2.92117 3.01136 3.09864 3.15221 3.55793 3.83489 4.22750 4.37909 4.56371 5.18763 5.24155 5.47391 5.57584 5.65173 5.71904 5.89609 6.01663 6.16428 6.18385 6.22986 6.28685 6.35319 6.50909 6.55487 6.68688 6.73780 6.87492 6.93717 7.12690 7.30486 7.40566 7.87457 8.23615 8.65657 9.02583 9.75454 10.19188 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.012665 C = 0.011548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.543286 B = 2210.329515 C = 2424.160286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.130 3.870 5 N -0.402 5.402 6 N -0.138 5.138 7 N -0.043 5.043 8 N -0.412 5.412 9 C 0.505 3.495 10 N -0.424 5.424 11 C -0.338 4.338 12 H 0.108 0.892 13 C 0.077 3.923 14 N -0.849 5.849 15 Si 0.862 3.138 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.257 1.257 19 C 0.098 3.902 20 C -0.169 4.169 21 C -0.197 4.197 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.165 0.835 29 H 0.283 0.717 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 3.053 -0.642 3.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.119 4.119 3 C -0.177 4.177 4 C 0.008 3.992 5 N -0.204 5.204 6 N -0.127 5.127 7 N -0.039 5.039 8 N -0.279 5.279 9 C 0.145 3.855 10 N -0.134 5.134 11 C -0.466 4.466 12 H 0.125 0.875 13 C -0.134 4.134 14 N -0.482 5.482 15 Si 0.686 3.314 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.181 1.181 19 C -0.007 4.007 20 C -0.206 4.206 21 C -0.236 4.236 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.182 0.818 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.767 2.406 -1.329 2.854 hybrid contribution 0.195 -0.568 0.873 1.060 sum -0.572 1.838 -0.456 1.978 Atomic orbital electron populations 1.23714 0.95261 1.01522 1.02053 1.21896 0.95066 0.96041 0.98901 1.20966 1.02051 0.93204 1.01508 1.21759 1.05439 0.93455 0.78529 1.50809 1.09118 1.47034 1.13436 1.82193 1.15570 1.20003 0.94892 1.77539 0.98617 1.11223 1.16533 1.74635 1.13661 1.25161 1.14487 1.22104 0.84439 0.91922 0.87050 1.40792 1.07389 1.57675 1.07591 1.18771 1.54953 0.95249 0.77675 0.87515 1.25864 0.92735 0.99399 0.95363 1.69731 1.43402 1.35196 0.99823 0.86894 0.80198 0.84288 0.79983 1.18903 1.20189 1.18090 1.21627 0.88176 0.94819 0.96070 1.23207 0.93181 1.03210 1.01043 1.23280 1.04341 0.95672 1.00342 0.88594 0.88576 0.92460 0.92768 0.88908 0.90584 0.81804 0.90660 0.86688 0.86718 0.89379 0.89437 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 13.90 29.01 0.40 -2.62 16 2 C -0.12 -2.16 5.64 -101.07 -0.57 -2.73 16 3 C -0.12 -2.11 9.77 36.01 0.35 -1.75 16 4 C 0.13 2.68 5.16 -5.19 -0.03 2.65 16 5 N -0.40 -9.16 3.12 -63.03 -0.20 -9.35 16 6 N -0.14 -3.24 13.93 60.35 0.84 -2.40 16 7 N -0.04 -1.04 13.38 60.35 0.81 -0.23 16 8 N -0.41 -9.96 11.74 30.11 0.35 -9.61 16 9 C 0.51 11.79 5.59 -320.35 -1.79 10.00 16 10 N -0.42 -9.23 2.09 -109.49 -0.23 -9.46 16 11 C -0.34 -7.51 5.03 -15.07 -0.08 -7.59 16 12 H 0.11 2.49 6.30 -52.49 -0.33 2.15 16 13 C 0.08 1.78 3.29 -17.46 -0.06 1.72 16 14 N -0.85 -20.16 13.95 55.49 0.77 -19.38 16 15 Si 0.86 19.65 26.23 -169.99 -4.46 15.19 16 16 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.26 -6.36 5.29 56.52 0.30 -6.07 16 19 C 0.10 1.87 6.33 -67.93 -0.43 1.44 16 20 C -0.17 -2.80 9.83 -26.73 -0.26 -3.06 16 21 C -0.20 -3.20 10.36 -26.74 -0.28 -3.47 16 22 H 0.10 1.50 8.00 -52.49 -0.42 1.08 16 23 H 0.10 1.35 8.05 -52.49 -0.42 0.93 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 26 H 0.09 1.78 5.27 -51.93 -0.27 1.50 16 27 H 0.08 1.48 7.99 -51.93 -0.42 1.06 16 28 H 0.17 3.61 2.76 -51.93 -0.14 3.47 16 29 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.12 2.17 7.98 -51.93 -0.41 1.75 16 31 H 0.11 2.12 7.07 -51.93 -0.37 1.75 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 281.21 15.07 4.24 4.24 Total: -1.00 -25.69 281.21 -4.74 -30.43 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.13 Total: 6.00 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.74 Total: -5.42 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 2.35 Total: -50.44 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.46 Total: 15.19 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -25.69 -4.74 -30.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119718727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.540 kcal (2) G-P(sol) polarization free energy of solvation -25.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds