Wall clock time and date at job start Mon Mar 30 2020 18:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99974 * 2 1 4 4 N 1.34776 * 120.00265 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00405 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47339 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47019 * 180.02562 * 6 5 4 8 8 C 1.38371 * 120.00017 * 179.97438 * 7 6 5 9 9 C 1.39708 * 119.42900 * 359.97438 * 8 7 6 10 10 C 1.36567 * 119.49636 * 179.97438 * 9 8 7 11 11 C 1.41326 * 118.40171 * 0.02562 * 10 9 8 12 12 C 1.41196 * 120.56761 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00128 * 334.95288 * 12 11 10 14 14 C 1.39873 * 120.00277 * 154.94790 * 12 11 10 15 15 N 1.30896 * 119.99600 * 334.35744 * 14 12 11 16 16 Si 1.86799 * 120.00039 * 154.35042 * 14 12 11 17 17 H 1.48501 * 109.47118 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47555 * 300.00133 * 16 14 12 19 19 H 1.48495 * 109.47047 * 60.00590 * 16 14 12 20 20 C 1.40750 * 118.86334 * 0.25431 * 11 10 9 21 21 N 1.31488 * 120.36927 * 359.46823 * 20 11 10 22 22 H 1.09000 * 109.46776 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46848 * 299.99103 * 1 2 3 24 24 H 1.08992 * 109.47308 * 59.99635 * 1 2 3 25 25 H 0.97009 * 120.00001 * 359.97438 * 4 2 1 26 26 H 1.08997 * 109.46671 * 59.99603 * 5 4 2 27 27 H 1.09000 * 109.46874 * 300.00085 * 5 4 2 28 28 H 1.09001 * 109.46910 * 59.99702 * 6 5 4 29 29 H 1.08998 * 109.46885 * 300.00117 * 6 5 4 30 30 H 0.96995 * 120.00202 * 359.97438 * 7 6 5 31 31 H 1.08008 * 120.25574 * 0.02562 * 9 8 7 32 32 H 1.08000 * 120.79816 * 180.02562 * 10 9 8 33 33 H 0.96993 * 120.00665 * 354.34369 * 15 14 12 34 34 H 1.08002 * 119.81566 * 179.74724 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1559 -2.6097 -0.0010 7 7 5.6209 -2.6096 -0.0009 8 6 6.3128 -3.8079 -0.0003 9 6 5.6023 -5.0108 0.0009 10 6 6.2838 -6.1943 0.0010 11 6 7.6965 -6.1565 0.0005 12 6 8.4469 -7.3526 0.0011 13 1 8.0162 -8.2600 0.3979 14 6 9.7479 -7.3624 -0.5122 15 7 10.1023 -6.4820 -1.4138 16 14 10.9797 -8.6315 0.0889 17 1 12.2771 -8.4294 -0.6048 18 1 11.1731 -8.4789 1.5534 19 1 10.4686 -9.9946 -0.2035 20 6 8.3427 -4.9061 0.0054 21 7 7.6402 -3.7947 -0.0002 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.6959 -2.0073 -0.0005 26 1 4.0095 -0.6535 0.8888 27 1 4.0089 -0.6532 -0.8911 28 1 3.7922 -3.1237 -0.8907 29 1 3.7929 -3.1233 0.8893 30 1 6.1059 -1.7696 -0.0013 31 1 4.5222 -5.0049 0.0008 32 1 5.7558 -7.1365 0.0015 33 1 9.4425 -5.8764 -1.7860 34 1 9.4217 -4.8593 0.0092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161652904.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:31 Heat of formation + Delta-G solvation = -16.356378 kcal Electronic energy + Delta-G solvation = -16924.472609 eV Core-core repulsion = 14049.512990 eV Total energy + Delta-G solvation = -2874.959618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78710 -38.76133 -36.29223 -34.64889 -33.38963 -31.21591 -30.74666 -28.95079 -27.41037 -24.62009 -23.07715 -21.64533 -21.09246 -20.55566 -17.95053 -17.14321 -16.88877 -15.98516 -15.71917 -15.50161 -14.74226 -14.41446 -14.03808 -13.74790 -13.58479 -13.10505 -12.90550 -12.81135 -12.46765 -11.99887 -11.77245 -11.63101 -11.58037 -11.21135 -11.06930 -10.39819 -10.16887 -9.89546 -9.37662 -9.28032 -8.82792 -8.52906 -8.09834 -7.21557 -6.91735 -4.29529 2.40887 2.64273 2.80791 2.87245 3.17418 3.29473 3.38183 4.03850 4.14181 4.53879 4.62073 4.74547 4.91380 5.01510 5.10997 5.37644 5.48069 5.51817 5.80383 5.88990 5.91795 6.11989 6.20716 6.44113 6.60638 7.10056 7.16418 7.23451 7.31908 7.67226 7.87664 7.97268 7.97613 8.15386 8.41340 8.68758 8.81937 9.57623 10.07528 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.078472 B = 0.003368 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.731714 B = 8311.485873 C = 8552.080194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.549 6.549 4 N -0.726 5.726 5 C 0.108 3.892 6 C 0.136 3.864 7 N -0.743 5.743 8 C 0.262 3.738 9 C -0.183 4.183 10 C -0.161 4.161 11 C 0.019 3.981 12 C -0.521 4.521 13 H 0.074 0.926 14 C 0.037 3.963 15 N -0.802 5.802 16 Si 1.066 2.934 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.277 1.277 20 C 0.023 3.977 21 N -0.508 5.508 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.403 0.597 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.393 0.607 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.296 0.704 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.367 4.789 1.966 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.426 6.426 4 N -0.379 5.379 5 C -0.017 4.017 6 C 0.009 3.991 7 N -0.383 5.383 8 C 0.032 3.968 9 C -0.207 4.207 10 C -0.187 4.187 11 C 0.014 3.986 12 C -0.550 4.550 13 H 0.092 0.908 14 C -0.183 4.183 15 N -0.426 5.426 16 Si 0.890 3.110 17 H -0.199 1.199 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.137 4.137 21 N -0.222 5.222 22 H 0.095 0.905 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.237 0.763 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.226 0.774 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.071 5.800 1.776 13.510 hybrid contribution -2.218 -0.504 0.095 2.276 sum -14.289 5.296 1.872 15.354 Atomic orbital electron populations 1.21838 0.91506 1.04284 1.05316 1.20825 0.90650 0.83354 0.75558 1.90742 1.70799 1.31425 1.49647 1.45972 1.07302 1.09001 1.75650 1.21448 0.79704 0.97378 1.03131 1.21045 0.82563 0.94491 1.00977 1.43293 1.02611 1.05531 1.86897 1.17631 0.88241 0.84943 1.06017 1.20657 0.98125 0.92612 1.09326 1.20899 0.94241 0.95984 1.07595 1.18444 0.92038 0.94480 0.93670 1.20285 1.00256 0.96388 1.38099 0.90773 1.26993 0.98675 0.99732 0.92941 1.70509 1.40111 1.14934 1.17079 0.83620 0.75550 0.74721 0.77127 1.19880 1.20036 1.20261 1.22472 0.98361 0.86593 1.06321 1.66598 1.05822 1.33307 1.16462 0.90489 0.88725 0.88713 0.76273 0.90862 0.90851 0.92720 0.92720 0.77364 0.88376 0.87866 0.89016 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.39 36.00 0.37 -0.62 16 2 C 0.51 5.38 7.94 -10.99 -0.09 5.29 16 3 O -0.55 -8.49 17.10 5.55 0.09 -8.39 16 4 N -0.73 -6.72 5.56 -60.29 -0.33 -7.06 16 5 C 0.11 1.25 5.79 -4.04 -0.02 1.22 16 6 C 0.14 1.77 4.98 -4.04 -0.02 1.75 16 7 N -0.74 -13.05 5.70 -60.36 -0.34 -13.40 16 8 C 0.26 5.84 7.64 -155.12 -1.19 4.66 16 9 C -0.18 -3.97 9.24 -39.64 -0.37 -4.34 16 10 C -0.16 -3.83 9.88 -39.01 -0.39 -4.21 16 11 C 0.02 0.50 5.31 -106.65 -0.57 -0.06 16 12 C -0.52 -13.66 9.00 -37.85 -0.34 -14.00 16 13 H 0.07 1.88 7.96 -52.49 -0.42 1.46 16 14 C 0.04 0.94 4.94 -17.34 -0.09 0.85 16 15 N -0.80 -21.37 12.33 55.54 0.68 -20.68 16 16 Si 1.07 21.40 30.00 -169.99 -5.10 16.30 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 20 C 0.02 0.62 9.15 -16.75 -0.15 0.46 16 21 N -0.51 -12.73 10.37 -11.79 -0.12 -12.85 16 22 H 0.08 0.26 7.91 -51.93 -0.41 -0.15 16 23 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.40 2.52 8.31 -40.82 -0.34 2.18 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 29 H 0.05 0.69 7.90 -51.93 -0.41 0.28 16 30 H 0.39 6.64 8.59 -40.82 -0.35 6.29 16 31 H 0.10 1.78 6.64 -52.48 -0.35 1.43 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.30 8.17 6.69 -40.82 -0.27 7.90 16 34 H 0.14 3.78 6.49 -52.49 -0.34 3.44 16 LS Contribution 295.67 15.07 4.46 4.46 Total: -1.00 -31.66 295.67 -7.72 -39.37 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.21 Total: 11.24 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.84 Total: -8.99 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.12 Total: -53.99 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.10 Total: 16.30 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.66 -7.72 -39.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161652904.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.019 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds