Wall clock time and date at job start Mon Mar 30 2020 18:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46857 * 2 1 4 4 C 1.34778 * 119.99918 * 180.27382 * 3 2 1 5 5 O 1.21594 * 120.00133 * 359.72291 * 4 3 2 6 6 C 1.47551 * 119.99736 * 179.72180 * 4 3 2 7 7 C 1.40352 * 120.46789 * 180.02562 * 6 4 3 8 8 C 1.36882 * 118.49242 * 179.97438 * 7 6 4 9 9 C 1.39464 * 119.36959 * 0.02562 * 8 7 6 10 10 N 1.38364 * 119.54359 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00001 * 184.99624 * 10 9 8 12 12 C 1.36845 * 120.00175 * 4.99559 * 10 9 8 13 13 H 1.08004 * 119.99620 * 24.45783 * 12 10 9 14 14 C 1.38891 * 120.00325 * 204.46072 * 12 10 9 15 15 N 1.31502 * 119.99824 * 10.41482 * 14 12 10 16 16 Si 1.86797 * 120.00083 * 190.41437 * 14 12 10 17 17 H 1.48494 * 109.47189 * 60.00078 * 16 14 12 18 18 H 1.48506 * 109.47118 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47288 * 299.99812 * 16 14 12 20 20 N 1.32689 * 120.91207 * 359.97438 * 9 8 7 21 21 C 1.31610 * 121.63696 * 359.72578 * 20 9 8 22 22 H 1.08997 * 109.47577 * 299.99750 * 1 2 3 23 23 H 1.09007 * 109.47221 * 60.00518 * 1 2 3 24 24 H 1.09004 * 109.46878 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47577 * 240.00250 * 2 1 3 26 26 H 1.08993 * 109.47090 * 119.99335 * 2 1 3 27 27 H 0.96998 * 120.00109 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.75853 * 359.97438 * 7 6 4 29 29 H 1.07997 * 120.31368 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47021 * 93.45031 * 11 10 9 31 31 H 1.09002 * 109.47104 * 213.44420 * 11 10 9 32 32 H 1.08994 * 109.47102 * 333.44889 * 11 10 9 33 33 H 0.97000 * 120.00303 * 180.02562 * 15 14 12 34 34 H 1.08007 * 119.73297 * 180.26429 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 -0.0056 5 8 4.1335 0.7034 -0.0055 6 6 3.8350 3.0188 -0.0118 7 6 5.2127 3.2866 -0.0182 8 6 5.6241 4.5921 -0.0243 9 6 4.6705 5.6098 -0.0235 10 7 5.0823 6.9307 -0.0292 11 6 4.0942 8.0065 0.0820 12 6 6.4127 7.2322 -0.1387 13 1 7.0891 6.5297 -0.6029 14 6 6.8930 8.4415 0.3471 15 7 6.1216 9.2046 1.0899 16 14 8.6348 8.9838 -0.0546 17 1 8.7893 9.1018 -1.5268 18 1 8.9015 10.3007 0.5778 19 1 9.5981 7.9802 0.4653 20 7 3.3737 5.3287 -0.0174 21 6 2.9363 4.0874 -0.0173 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.3879 2.1185 -0.0004 28 1 5.9320 2.4810 -0.0182 29 1 6.6771 4.8318 -0.0297 30 1 3.9839 8.2918 1.1282 31 1 4.4284 8.8681 -0.4961 32 1 3.1352 7.6603 -0.3032 33 1 6.4568 10.0493 1.4290 34 1 1.8738 3.8939 -0.0165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:06 Heat of formation + Delta-G solvation = 7.551513 kcal Electronic energy + Delta-G solvation = -17521.242573 eV Core-core repulsion = 14647.319679 eV Total energy + Delta-G solvation = -2873.922894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67344 -38.47570 -36.02398 -34.94750 -32.37139 -31.40386 -30.77706 -28.80761 -26.75487 -24.83461 -22.90193 -22.57128 -21.17274 -20.03248 -17.82059 -17.32949 -16.17810 -15.96333 -15.25316 -14.86672 -14.75057 -14.06878 -13.92946 -13.60516 -13.44393 -13.00060 -12.56359 -12.16487 -12.14910 -11.84687 -11.74675 -11.46630 -11.41667 -11.32054 -10.95952 -10.69930 -10.59125 -9.62780 -9.42716 -9.02027 -8.83522 -8.74756 -8.37700 -7.05347 -6.65987 -4.10551 1.81320 2.43787 3.00567 3.03232 3.05190 3.62080 3.66664 3.79279 4.54912 4.59327 4.96978 5.04403 5.10053 5.27719 5.32765 5.59823 5.78522 5.84620 5.91179 6.03662 6.19482 6.25980 6.55553 6.66849 6.77233 6.80013 6.91490 7.07406 7.12776 7.23780 7.47317 7.79182 7.97036 8.20912 8.76292 8.83498 8.93815 9.44530 10.27448 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.048727 B = 0.004573 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.493709 B = 6121.198013 C = 6616.720992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.742 5.742 4 C 0.579 3.421 5 O -0.570 6.570 6 C -0.340 4.340 7 C 0.021 3.979 8 C -0.254 4.254 9 C 0.363 3.637 10 N -0.390 5.390 11 C 0.117 3.883 12 C -0.315 4.315 13 H 0.105 0.895 14 C 0.037 3.963 15 N -0.855 5.855 16 Si 0.936 3.064 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.267 1.267 20 N -0.573 5.573 21 C 0.202 3.798 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.396 0.604 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.277 0.723 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 -7.013 -1.733 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.395 5.395 4 C 0.371 3.629 5 O -0.451 6.451 6 C -0.352 4.352 7 C -0.005 4.005 8 C -0.280 4.280 9 C 0.120 3.880 10 N -0.072 5.072 11 C -0.027 4.027 12 C -0.444 4.444 13 H 0.122 0.878 14 C -0.172 4.172 15 N -0.488 5.488 16 Si 0.761 3.239 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.192 1.192 20 N -0.294 5.294 21 C 0.033 3.967 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.231 0.769 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.021 -6.305 -1.604 9.572 hybrid contribution 1.014 0.053 -0.053 1.016 sum -6.007 -6.253 -1.657 8.828 Atomic orbital electron populations 1.22005 0.94944 1.02767 1.02481 1.21161 0.93672 0.83898 1.01909 1.45938 1.07507 1.08033 1.78072 1.18198 0.81215 0.89038 0.74437 1.90668 1.55496 1.46520 1.52373 1.19755 0.95181 0.92089 1.28221 1.20737 0.94050 0.95673 0.90005 1.20847 1.00074 0.91792 1.15295 1.18526 0.88566 0.85961 0.94919 1.42652 1.06697 1.01066 1.56819 1.21539 0.89753 0.89129 1.02247 1.19798 0.83450 1.04070 1.37075 0.87759 1.25558 1.00696 0.96448 0.94467 1.70050 1.37262 1.12439 1.29017 0.85821 0.80577 0.78298 0.79169 1.19354 1.20423 1.19203 1.67084 1.15238 1.21848 1.25195 1.22123 0.97608 0.87090 0.89915 0.92027 0.92052 0.91203 0.92030 0.92015 0.76884 0.86091 0.85498 0.91959 0.92002 0.93137 0.91262 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.03 37.16 0.37 -0.94 16 2 C 0.12 1.37 6.39 -4.04 -0.03 1.35 16 3 N -0.74 -10.31 5.51 -61.34 -0.34 -10.65 16 4 C 0.58 10.67 7.77 -12.46 -0.10 10.57 16 5 O -0.57 -12.27 16.41 5.28 0.09 -12.19 16 6 C -0.34 -6.62 5.89 -104.78 -0.62 -7.24 16 7 C 0.02 0.43 9.65 -39.28 -0.38 0.05 16 8 C -0.25 -5.61 9.19 -39.62 -0.36 -5.98 16 9 C 0.36 8.55 7.33 -155.27 -1.14 7.41 16 10 N -0.39 -9.59 3.10 -122.44 -0.38 -9.97 16 11 C 0.12 2.68 8.77 59.85 0.52 3.20 16 12 C -0.32 -7.77 8.88 -15.07 -0.13 -7.91 16 13 H 0.10 2.47 6.33 -52.48 -0.33 2.14 16 14 C 0.04 0.87 5.14 -17.45 -0.09 0.78 16 15 N -0.85 -21.17 10.66 55.49 0.59 -20.58 16 16 Si 0.94 18.51 29.57 -169.99 -5.03 13.48 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 N -0.57 -12.49 8.99 -12.12 -0.11 -12.60 16 21 C 0.20 3.76 10.71 -17.13 -0.18 3.57 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.40 4.54 6.52 -40.82 -0.27 4.27 16 28 H 0.12 2.38 7.73 -52.49 -0.41 1.97 16 29 H 0.13 2.75 6.26 -52.49 -0.33 2.42 16 30 H 0.06 1.50 7.42 -51.93 -0.39 1.12 16 31 H 0.06 1.43 7.26 -51.93 -0.38 1.06 16 32 H 0.05 1.08 7.17 -51.93 -0.37 0.71 16 33 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 34 H 0.13 1.91 6.41 -52.48 -0.34 1.57 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -28.89 289.42 -7.00 -35.88 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.05 Total: 7.39 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.13 Total: 4.87 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.23 Total: -53.80 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.89 -7.00 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.433 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds