Wall clock time and date at job start Mon Mar 30 2020 18:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46857 * 2 1 4 4 C 1.34778 * 119.99918 * 180.27382 * 3 2 1 5 5 O 1.21594 * 120.00133 * 359.72291 * 4 3 2 6 6 C 1.47551 * 119.99736 * 179.72180 * 4 3 2 7 7 C 1.40352 * 120.46789 * 180.02562 * 6 4 3 8 8 C 1.36882 * 118.49242 * 179.97438 * 7 6 4 9 9 C 1.39464 * 119.36959 * 0.02562 * 8 7 6 10 10 N 1.38364 * 119.54359 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00001 * 184.99624 * 10 9 8 12 12 C 1.36845 * 120.00175 * 4.99559 * 10 9 8 13 13 H 1.08004 * 119.99620 * 24.45783 * 12 10 9 14 14 C 1.38891 * 120.00325 * 204.46072 * 12 10 9 15 15 N 1.31502 * 119.99824 * 10.41482 * 14 12 10 16 16 Si 1.86797 * 120.00083 * 190.41437 * 14 12 10 17 17 H 1.48494 * 109.47189 * 60.00078 * 16 14 12 18 18 H 1.48506 * 109.47118 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47288 * 299.99812 * 16 14 12 20 20 N 1.32689 * 120.91207 * 359.97438 * 9 8 7 21 21 C 1.31610 * 121.63696 * 359.72578 * 20 9 8 22 22 H 1.08997 * 109.47577 * 299.99750 * 1 2 3 23 23 H 1.09007 * 109.47221 * 60.00518 * 1 2 3 24 24 H 1.09004 * 109.46878 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47577 * 240.00250 * 2 1 3 26 26 H 1.08993 * 109.47090 * 119.99335 * 2 1 3 27 27 H 0.96998 * 120.00109 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.75853 * 359.97438 * 7 6 4 29 29 H 1.07997 * 120.31368 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47021 * 93.45031 * 11 10 9 31 31 H 1.09002 * 109.47104 * 213.44420 * 11 10 9 32 32 H 1.08994 * 109.47102 * 333.44889 * 11 10 9 33 33 H 0.97000 * 120.00303 * 180.02562 * 15 14 12 34 34 H 1.08007 * 119.73297 * 180.26429 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 -0.0056 5 8 4.1335 0.7034 -0.0055 6 6 3.8350 3.0188 -0.0118 7 6 5.2127 3.2866 -0.0182 8 6 5.6241 4.5921 -0.0243 9 6 4.6705 5.6098 -0.0235 10 7 5.0823 6.9307 -0.0292 11 6 4.0942 8.0065 0.0820 12 6 6.4127 7.2322 -0.1387 13 1 7.0891 6.5297 -0.6029 14 6 6.8930 8.4415 0.3471 15 7 6.1216 9.2046 1.0899 16 14 8.6348 8.9838 -0.0546 17 1 8.7893 9.1018 -1.5268 18 1 8.9015 10.3007 0.5778 19 1 9.5981 7.9802 0.4653 20 7 3.3737 5.3287 -0.0174 21 6 2.9363 4.0874 -0.0173 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.3879 2.1185 -0.0004 28 1 5.9320 2.4810 -0.0182 29 1 6.6771 4.8318 -0.0297 30 1 3.9839 8.2918 1.1282 31 1 4.4284 8.8681 -0.4961 32 1 3.1352 7.6603 -0.3032 33 1 6.4568 10.0493 1.4290 34 1 1.8738 3.8939 -0.0165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:05 Heat of formation + Delta-G solvation = -10.400628 kcal Electronic energy + Delta-G solvation = -17522.021037 eV Core-core repulsion = 14647.319679 eV Total energy + Delta-G solvation = -2874.701358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27829 -40.02973 -37.73275 -36.18132 -34.11539 -33.09727 -32.04085 -30.23429 -28.53746 -26.47849 -24.32994 -23.90976 -22.69711 -21.54666 -19.54412 -18.86541 -17.86271 -17.41721 -16.51861 -16.38394 -16.26096 -15.64729 -15.56254 -15.19274 -14.76057 -14.60102 -13.84319 -13.80339 -13.53562 -13.25548 -13.07208 -13.00320 -12.66792 -12.58851 -12.47735 -12.29963 -12.14642 -11.37115 -10.99356 -10.72952 -10.55294 -10.05529 -10.00470 -8.79477 -8.41830 -5.95789 0.18851 0.75608 1.41739 1.45623 1.52553 2.10474 2.16711 2.40564 2.83798 2.85577 3.36424 3.74685 4.13187 4.18755 4.28709 4.30539 4.46440 4.58573 4.59826 4.78669 4.94253 5.01474 5.07125 5.13360 5.20167 5.27178 5.28025 5.32817 5.55586 5.61575 5.75802 6.06715 6.45481 6.70524 7.05188 7.17393 7.40796 7.69927 8.52597 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.048727 B = 0.004573 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.493709 B = 6121.198013 C = 6616.720992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 N -0.722 5.722 4 C 0.578 3.422 5 O -0.603 6.603 6 C -0.334 4.334 7 C 0.020 3.980 8 C -0.270 4.270 9 C 0.354 3.646 10 N -0.418 5.418 11 C 0.135 3.865 12 C -0.341 4.341 13 H 0.104 0.896 14 C -0.003 4.003 15 N -0.887 5.887 16 Si 1.001 2.999 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.265 1.265 20 N -0.586 5.586 21 C 0.207 3.793 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.411 0.589 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.278 0.722 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 -8.411 -2.072 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 N -0.375 5.375 4 C 0.369 3.631 5 O -0.486 6.486 6 C -0.346 4.346 7 C -0.006 4.006 8 C -0.296 4.296 9 C 0.113 3.887 10 N -0.103 5.103 11 C -0.008 4.008 12 C -0.470 4.470 13 H 0.122 0.878 14 C -0.207 4.207 15 N -0.522 5.522 16 Si 0.823 3.177 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.189 1.189 20 N -0.306 5.306 21 C 0.040 3.960 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.248 0.752 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.554 -7.746 -1.948 11.703 hybrid contribution 1.285 0.174 0.051 1.298 sum -7.269 -7.572 -1.898 10.666 Atomic orbital electron populations 1.21961 0.91618 1.04271 1.03359 1.21379 0.96335 0.82128 1.01305 1.45841 1.06075 1.09855 1.75757 1.18057 0.82568 0.87945 0.74485 1.90663 1.56809 1.47143 1.54015 1.20074 0.94936 0.93401 1.26225 1.20931 0.95196 0.95259 0.89201 1.20886 0.99960 0.92244 1.16529 1.18877 0.89563 0.86067 0.94241 1.42754 1.06815 1.01484 1.59245 1.21284 0.90020 0.88744 1.00755 1.20021 0.83922 1.04859 1.38157 0.87846 1.26370 1.04171 0.96178 0.94027 1.70143 1.38830 1.12879 1.30304 0.84861 0.76111 0.77752 0.78983 1.18857 1.20106 1.18931 1.67179 1.14403 1.23359 1.25704 1.22828 0.99737 0.85670 0.87756 0.91161 0.91105 0.89469 0.92652 0.92722 0.75160 0.85379 0.85876 0.93921 0.93069 0.92009 0.91207 0.80067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.03 71.98 0.72 -1.12 16 2 C 0.11 2.28 6.39 86.38 0.55 2.83 16 3 N -0.72 -17.65 5.51 -466.25 -2.57 -20.22 16 4 C 0.58 19.96 7.77 86.70 0.67 20.63 16 5 O -0.60 -25.07 16.41 -4.01 -0.07 -25.13 16 6 C -0.33 -12.35 5.89 -19.97 -0.12 -12.47 16 7 C 0.02 0.79 9.65 22.47 0.22 1.01 16 8 C -0.27 -12.01 9.19 22.25 0.20 -11.81 16 9 C 0.35 16.71 7.33 133.27 0.98 17.69 16 10 N -0.42 -20.96 3.10 -541.29 -1.68 -22.64 16 11 C 0.14 6.37 8.77 127.77 1.12 7.49 16 12 C -0.34 -17.28 8.88 84.07 0.75 -16.53 16 13 H 0.10 5.05 6.33 -2.91 -0.02 5.03 16 14 C 0.00 -0.15 5.14 84.90 0.44 0.29 16 15 N -0.89 -45.12 10.66 21.66 0.23 -44.89 16 16 Si 1.00 38.38 29.57 68.60 2.03 40.41 16 17 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 18 H -0.28 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 N -0.59 -24.77 8.99 -192.27 -1.73 -26.50 16 21 C 0.21 7.15 10.71 85.06 0.91 8.06 16 22 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.41 7.58 6.52 -92.71 -0.60 6.97 16 28 H 0.13 4.97 7.73 -2.91 -0.02 4.95 16 29 H 0.12 5.48 6.26 -2.91 -0.02 5.46 16 30 H 0.04 2.12 7.42 -2.39 -0.02 2.11 16 31 H 0.05 2.45 7.26 -2.39 -0.02 2.43 16 32 H 0.06 2.67 7.17 -2.39 -0.02 2.65 16 33 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16 34 H 0.18 4.35 6.41 -2.91 -0.02 4.33 16 Total: -1.00 -62.93 289.42 3.18 -59.75 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.52 Total: 23.14 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 6.44 Total: 16.07 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -5.74 Total: -114.25 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.07 Total: -25.13 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -62.93 3.18 -59.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.353 kcal (2) G-P(sol) polarization free energy of solvation -62.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds