Wall clock time and date at job start Mon Mar 30 2020 18:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34774 * 120.00091 * 2 1 4 4 O 1.21279 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.50710 * 119.99955 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47017 * 59.99902 * 5 3 2 7 7 C 1.52991 * 109.47009 * 299.99573 * 5 3 2 8 8 N 1.46507 * 109.46645 * 179.97438 * 5 3 2 9 9 C 1.38092 * 119.99376 * 204.99946 * 8 5 3 10 10 N 1.32268 * 119.90791 * 359.97438 * 9 8 5 11 11 C 1.31963 * 121.86394 * 179.97438 * 10 9 8 12 12 C 1.38689 * 121.45184 * 0.02562 * 11 10 9 13 13 C 1.38008 * 119.62199 * 0.22718 * 12 11 10 14 14 C 1.41005 * 118.28471 * 359.52097 * 13 12 11 15 15 C 1.41012 * 120.70901 * 180.25844 * 14 13 12 16 16 H 1.08001 * 120.00354 * 205.20280 * 15 14 13 17 17 C 1.39950 * 119.99798 * 25.20670 * 15 14 13 18 18 N 1.30870 * 120.00286 * 14.17533 * 17 15 14 19 19 Si 1.86803 * 119.99869 * 194.18327 * 17 15 14 20 20 H 1.48496 * 109.47568 * 89.99454 * 19 17 15 21 21 H 1.48498 * 109.47008 * 209.99669 * 19 17 15 22 22 H 1.48500 * 109.46960 * 329.99249 * 19 17 15 23 23 H 1.09002 * 109.47128 * 299.99779 * 1 2 3 24 24 H 1.08999 * 109.47103 * 60.00134 * 1 2 3 25 25 H 1.09006 * 109.47180 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00267 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47450 * 60.00325 * 7 5 3 28 28 H 1.09000 * 109.47555 * 180.02562 * 7 5 3 29 29 H 1.09002 * 109.47490 * 300.00464 * 7 5 3 30 30 H 0.96996 * 120.00400 * 24.99951 * 8 5 3 31 31 H 1.08001 * 119.27941 * 179.97438 * 11 10 9 32 32 H 1.07998 * 120.18886 * 179.97438 * 12 11 10 33 33 H 1.07995 * 120.85786 * 179.74911 * 13 12 11 34 34 H 0.96995 * 119.99927 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0089 0.6535 -0.8908 7 6 4.1563 0.4457 1.2483 8 7 4.1342 2.5484 -0.0011 9 6 5.3860 2.8379 -0.5071 10 7 6.1428 1.8667 -0.9903 11 6 7.3445 2.0997 -1.4835 12 6 7.8762 3.3801 -1.5194 13 6 7.1404 4.4384 -1.0261 14 6 5.8560 4.1749 -0.5074 15 6 5.0581 5.2188 0.0046 16 1 4.2979 5.0057 0.7416 17 6 5.2512 6.5308 -0.4423 18 7 5.9622 6.7580 -1.5173 19 14 4.4944 7.9580 0.4958 20 1 5.4493 8.4333 1.5290 21 1 4.1930 9.0654 -0.4465 22 1 3.2392 7.5098 1.1506 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9500 -0.8400 -0.0004 27 1 3.7930 -0.5820 1.2483 28 1 5.2463 0.4460 1.2482 29 1 3.7933 0.9593 2.1385 30 1 3.5782 3.2595 0.3540 31 1 7.9270 1.2751 -1.8669 32 1 8.8621 3.5475 -1.9272 33 1 7.5366 5.4429 -1.0405 34 1 6.0963 7.6674 -1.8268 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169980522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:30 Heat of formation + Delta-G solvation = -5.427022 kcal Electronic energy + Delta-G solvation = -18012.980567 eV Core-core repulsion = 15138.494882 eV Total energy + Delta-G solvation = -2874.485686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68560 -38.31148 -34.95553 -34.49277 -33.91251 -30.94593 -30.32677 -27.88213 -26.74359 -25.34693 -23.46890 -21.53650 -20.71235 -19.79212 -17.60138 -17.19347 -16.28726 -15.78669 -15.28465 -14.97621 -14.59151 -13.91415 -13.63266 -13.53513 -13.00873 -12.80980 -12.57552 -12.34817 -12.09305 -11.99333 -11.64120 -11.39554 -11.33355 -11.12214 -10.89377 -10.47805 -9.74358 -9.51944 -9.27767 -9.09683 -9.01373 -8.07532 -7.88538 -6.75446 -6.49162 -4.19620 2.77160 2.85395 3.10679 3.12829 3.16255 3.26718 3.29734 3.98686 4.43076 4.74880 4.90681 5.19856 5.44342 5.52617 5.63193 5.73153 5.80330 5.84199 6.10096 6.21791 6.43470 6.47137 6.54887 6.80165 6.89296 7.18049 7.20644 7.49676 7.70954 7.84719 8.05126 8.30384 8.37808 8.58001 8.70625 8.83546 9.03108 9.78088 10.25725 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.007568 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.547223 B = 3698.837062 C = 4880.016025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.739 5.739 3 C 0.507 3.493 4 O -0.531 6.531 5 C 0.150 3.850 6 H 0.104 0.896 7 C -0.154 4.154 8 N -0.712 5.712 9 C 0.305 3.695 10 N -0.534 5.534 11 C 0.000 4.000 12 C -0.190 4.190 13 C -0.125 4.125 14 C 0.034 3.966 15 C -0.451 4.451 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.800 5.800 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.262 1.262 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.402 0.598 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.412 0.588 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -10.056 3.257 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.392 5.392 3 C 0.293 3.707 4 O -0.406 6.406 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.214 4.214 8 N -0.353 5.353 9 C 0.067 3.933 10 N -0.252 5.252 11 C -0.154 4.154 12 C -0.213 4.213 13 C -0.151 4.151 14 C 0.027 3.973 15 C -0.482 4.482 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.427 5.427 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.186 1.186 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.235 0.765 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.251 0.749 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.045 -10.085 3.053 12.148 hybrid contribution 0.010 1.390 0.326 1.428 sum -6.035 -8.695 3.379 11.111 Atomic orbital electron populations 1.21486 0.80051 1.01777 1.02235 1.45795 1.07443 1.08848 1.77108 1.21259 0.90916 0.83519 0.75026 1.90698 1.70258 1.31298 1.48321 1.20333 0.87873 0.87557 1.00346 0.87814 1.22159 1.03354 0.98552 0.97290 1.43527 1.15892 1.05687 1.70193 1.18406 0.86351 0.89965 0.98550 1.66501 1.07225 1.35387 1.16045 1.21327 0.92893 0.94843 1.06319 1.21412 0.99983 0.94531 1.05355 1.21405 0.93072 0.98444 1.02221 1.17912 0.93127 0.90429 0.95865 1.19207 1.16602 0.91281 1.21138 0.90601 1.25818 0.94274 1.00312 0.93835 1.69800 1.32193 1.22693 1.17982 0.86292 0.80254 0.80087 0.80013 1.19428 1.20387 1.18574 0.92431 0.92397 0.90935 0.76473 0.92724 0.90638 0.92758 0.74906 0.86522 0.88787 0.85471 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.70 59.84 0.64 1.52 16 2 N -0.74 -8.65 5.61 -67.08 -0.38 -9.03 16 3 C 0.51 8.43 7.22 -10.98 -0.08 8.35 16 4 O -0.53 -11.01 15.84 5.56 0.09 -10.93 16 5 C 0.15 2.62 2.99 -69.08 -0.21 2.41 16 6 H 0.10 1.85 7.53 -51.93 -0.39 1.46 16 7 C -0.15 -2.25 9.39 37.15 0.35 -1.90 16 8 N -0.71 -15.70 5.00 -54.61 -0.27 -15.97 16 9 C 0.30 7.58 7.49 -155.02 -1.16 6.42 16 10 N -0.53 -12.69 9.17 -11.86 -0.11 -12.80 16 11 C 0.00 -0.01 11.17 -17.33 -0.19 -0.20 16 12 C -0.19 -4.50 10.08 -39.50 -0.40 -4.90 16 13 C -0.12 -3.28 8.79 -38.62 -0.34 -3.62 16 14 C 0.03 0.91 5.60 -106.47 -0.60 0.31 16 15 C -0.45 -12.00 8.53 -37.89 -0.32 -12.32 16 16 H 0.08 1.95 6.67 -52.49 -0.35 1.60 16 17 C 0.07 1.89 5.23 -17.32 -0.09 1.80 16 18 N -0.80 -21.00 10.83 55.55 0.60 -20.39 16 19 Si 0.91 19.27 29.58 -169.99 -5.03 14.24 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 22 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.40 3.43 8.25 -40.82 -0.34 3.09 16 27 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.41 9.52 5.99 -40.82 -0.24 9.28 16 31 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.13 3.43 6.18 -52.49 -0.32 3.10 16 34 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -30.98 291.86 -7.23 -38.21 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -4.13 Total: 14.41 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.40 Total: -2.14 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.16 Total: -58.19 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.98 -7.23 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169980522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.784 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds