Wall clock time and date at job start Mon Mar 30 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00104 * 2 1 4 4 H 1.07996 * 119.99867 * 200.41256 * 3 2 1 5 5 C 1.38815 * 120.00187 * 20.40479 * 3 2 1 6 6 N 1.31625 * 119.99747 * 14.99434 * 5 3 2 7 7 Si 1.86793 * 120.00175 * 195.00076 * 5 3 2 8 8 H 1.48499 * 109.47684 * 84.99955 * 7 5 3 9 9 H 1.48503 * 109.47078 * 205.00521 * 7 5 3 10 10 H 1.48506 * 109.47148 * 324.99873 * 7 5 3 11 11 C 1.46499 * 119.99890 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.70397 * 179.47555 * 11 2 1 13 13 C 1.53321 * 109.68011 * 300.00082 * 11 2 1 14 14 C 1.52731 * 108.39465 * 189.52601 * 13 11 2 15 15 C 1.50639 * 110.57700 * 308.80146 * 14 13 11 16 16 C 1.38927 * 117.74884 * 197.77542 * 15 14 13 17 17 C 1.37930 * 120.59989 * 180.59188 * 16 15 14 18 18 C 1.38224 * 119.79881 * 0.02562 * 17 16 15 19 19 C 1.38156 * 119.74950 * 359.85587 * 18 17 16 20 20 F 1.35097 * 119.76028 * 179.97438 * 19 18 17 21 21 C 1.37627 * 122.55147 * 18.10754 * 15 14 13 22 22 C 1.50626 * 122.56802 * 358.86391 * 21 15 14 23 23 H 1.08997 * 109.47079 * 275.13659 * 1 2 3 24 24 H 1.08997 * 109.47380 * 35.13946 * 1 2 3 25 25 H 1.09003 * 109.46863 * 155.14219 * 1 2 3 26 26 H 0.96995 * 119.99658 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.68027 * 69.79488 * 13 11 2 28 28 H 1.09008 * 109.67922 * 309.24621 * 13 11 2 29 29 H 1.08993 * 109.25727 * 188.52618 * 14 13 11 30 30 H 1.08989 * 109.22864 * 69.06587 * 14 13 11 31 31 H 1.08005 * 119.69392 * 0.61899 * 16 15 14 32 32 H 1.08003 * 120.10390 * 179.97438 * 17 16 15 33 33 H 1.08013 * 120.12649 * 180.13591 * 18 17 16 34 34 H 1.09002 * 109.25031 * 138.29122 * 22 21 15 35 35 H 1.09007 * 109.24809 * 257.70127 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1788 1.2152 -0.3262 5 6 1.5210 2.3503 0.4191 6 7 0.3883 2.2832 1.0862 7 14 2.2824 4.0126 0.0363 8 1 1.8671 4.4464 -1.3218 9 1 1.8230 5.0096 1.0365 10 1 3.7624 3.9033 0.0901 11 6 2.1975 -1.2687 0.0006 12 1 3.2699 -1.0740 -0.0089 13 6 1.8305 -2.0762 1.2512 14 6 2.7764 -3.2715 1.3478 15 6 2.8084 -4.0280 0.0455 16 6 3.3032 -5.3260 0.0634 17 6 3.3706 -6.0678 -1.0975 18 6 2.9430 -5.5166 -2.2907 19 6 2.4480 -4.2269 -2.3116 20 9 2.0305 -3.6877 -3.4779 21 6 2.3763 -3.4793 -1.1404 22 6 1.8123 -2.0856 -1.2310 23 1 -0.3633 0.0920 1.0235 24 1 -0.3634 0.8403 -0.5915 25 1 -0.3633 -0.9325 -0.4320 26 1 -0.0508 3.0969 1.3794 27 1 0.8016 -2.4276 1.1724 28 1 1.9384 -1.4503 2.1370 29 1 2.4355 -3.9365 2.1412 30 1 3.7800 -2.9171 1.5823 31 1 3.6378 -5.7582 0.9949 32 1 3.7572 -7.0760 -1.0744 33 1 2.9914 -6.0935 -3.2026 34 1 2.2036 -1.5968 -2.1233 35 1 0.7258 -2.1414 -1.3000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171000888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:39 Heat of formation + Delta-G solvation = -8.926416 kcal Electronic energy + Delta-G solvation = -18220.998460 eV Core-core repulsion = 15326.441068 eV Total energy + Delta-G solvation = -2894.557393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.68523 -39.66975 -36.68959 -34.00521 -31.91654 -30.95495 -29.21439 -27.83294 -25.97422 -23.72368 -22.95232 -21.86519 -21.08098 -18.52763 -17.06814 -16.82810 -16.12634 -15.67199 -15.45211 -14.93339 -14.23956 -13.81422 -13.60943 -13.38012 -13.18339 -12.80794 -12.59206 -12.23008 -12.11066 -11.69393 -11.41952 -11.13433 -10.90778 -10.80586 -10.56068 -10.33834 -10.20738 -10.01738 -9.78458 -9.64654 -8.54903 -8.49191 -8.40169 -6.75231 -5.69334 -3.12802 1.27137 1.35368 3.41076 3.47364 3.48076 3.67913 4.40293 4.49914 4.79532 4.85569 5.03745 5.24111 5.40032 5.41132 5.47494 5.52942 5.72999 5.85431 5.92790 5.98697 6.18067 6.20239 6.29673 6.33703 6.35824 6.48144 6.55791 6.78765 6.81117 6.94915 7.02773 7.11991 7.42965 7.76050 7.84335 8.42073 9.26770 9.90815 10.39229 11.35731 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.005851 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.337104 B = 4784.174817 C = 5119.809543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.595 5.595 3 C -0.254 4.254 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.183 3.817 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.079 4.079 15 C -0.046 4.046 16 C -0.134 4.134 17 C -0.104 4.104 18 C -0.163 4.163 19 C 0.092 3.908 20 F -0.140 7.140 21 C -0.091 4.091 22 C -0.099 4.099 23 H 0.030 0.970 24 H 0.041 0.959 25 H -0.001 1.001 26 H 0.252 0.748 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.363 -15.340 -2.338 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.316 5.316 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.075 3.925 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.117 4.117 15 C -0.046 4.046 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.182 4.182 19 C 0.072 3.928 20 F -0.119 7.119 21 C -0.093 4.093 22 C -0.138 4.138 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.018 0.982 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.092 0.908 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.225 -15.131 -2.315 15.880 hybrid contribution 0.222 0.920 -0.465 1.055 sum 4.447 -14.211 -2.781 15.148 Atomic orbital electron populations 1.20775 0.82693 0.95384 0.99421 1.43949 1.01834 1.00164 1.85670 1.19242 0.96936 0.85003 1.37131 0.91336 1.24944 0.97902 0.98276 0.98610 1.70091 1.18925 1.26734 1.39533 0.86282 0.78615 0.84087 0.77617 1.21516 1.21802 1.20600 1.20227 0.96080 0.85835 0.90392 0.91651 1.22177 0.98292 0.95503 1.01347 1.20546 1.01212 0.97070 0.92840 1.19651 0.96314 0.93913 0.94728 1.21207 1.01252 0.94249 0.98505 1.20801 0.99733 0.99770 0.91873 1.20984 1.03248 0.94311 0.99688 1.17817 1.00730 0.92657 0.81547 1.91472 1.87941 1.86265 1.46182 1.19925 1.00573 0.97480 0.91295 1.21075 1.00983 0.89800 1.01949 0.95185 0.94009 0.98232 0.93810 0.92509 0.90877 0.91085 0.90404 0.85779 0.85537 0.85297 0.90782 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.23 59.85 0.49 4.50 16 2 N -0.60 -14.91 2.83 -173.46 -0.49 -15.40 16 3 C -0.25 -7.00 9.62 -15.06 -0.14 -7.14 16 4 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 5 C 0.00 0.02 5.06 -17.43 -0.09 -0.07 16 6 N -0.91 -26.54 10.67 55.49 0.59 -25.95 16 7 Si 0.90 22.02 29.58 -169.99 -5.03 16.99 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.18 3.77 2.62 -67.91 -0.18 3.59 16 12 H 0.07 1.37 7.82 -51.93 -0.41 0.97 16 13 C -0.13 -2.40 5.13 -26.70 -0.14 -2.54 16 14 C -0.08 -1.12 5.67 -28.05 -0.16 -1.28 16 15 C -0.05 -0.66 5.74 -104.62 -0.60 -1.26 16 16 C -0.13 -1.60 9.60 -39.44 -0.38 -1.98 16 17 C -0.10 -1.15 10.05 -39.70 -0.40 -1.55 16 18 C -0.16 -2.05 10.02 -39.62 -0.40 -2.45 16 19 C 0.09 1.41 7.22 -39.28 -0.28 1.13 16 20 F -0.14 -2.29 16.46 2.25 0.04 -2.26 16 21 C -0.09 -1.49 5.74 -104.55 -0.60 -2.09 16 22 C -0.10 -1.85 4.77 -28.06 -0.13 -1.98 16 23 H 0.03 0.80 7.40 -51.93 -0.38 0.41 16 24 H 0.04 1.12 7.22 -51.93 -0.37 0.74 16 25 H 0.00 -0.02 6.25 -51.93 -0.32 -0.34 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 28 H 0.07 1.44 8.14 -51.92 -0.42 1.01 16 29 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 30 H 0.08 1.05 8.14 -51.94 -0.42 0.63 16 31 H 0.12 1.17 8.05 -52.48 -0.42 0.75 16 32 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 33 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.07 1.45 7.84 -51.93 -0.41 1.04 16 35 H 0.08 1.51 6.31 -51.92 -0.33 1.19 16 LS Contribution 285.85 15.07 4.31 4.31 Total: -1.00 -29.55 285.85 -8.31 -37.86 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.72 Total: -2.45 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.01 Total: -13.11 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.10 Total: -41.35 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.55 -8.31 -37.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171000888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.935 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds