Wall clock time and date at job start Mon Mar 30 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00104 * 2 1 4 4 H 1.07996 * 119.99867 * 200.41256 * 3 2 1 5 5 C 1.38815 * 120.00187 * 20.40479 * 3 2 1 6 6 N 1.31625 * 119.99747 * 14.99434 * 5 3 2 7 7 Si 1.86793 * 120.00175 * 195.00076 * 5 3 2 8 8 H 1.48499 * 109.47684 * 84.99955 * 7 5 3 9 9 H 1.48503 * 109.47078 * 205.00521 * 7 5 3 10 10 H 1.48506 * 109.47148 * 324.99873 * 7 5 3 11 11 C 1.46499 * 119.99890 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.70397 * 179.47555 * 11 2 1 13 13 C 1.53321 * 109.68011 * 300.00082 * 11 2 1 14 14 C 1.52731 * 108.39465 * 189.52601 * 13 11 2 15 15 C 1.50639 * 110.57700 * 308.80146 * 14 13 11 16 16 C 1.38927 * 117.74884 * 197.77542 * 15 14 13 17 17 C 1.37930 * 120.59989 * 180.59188 * 16 15 14 18 18 C 1.38224 * 119.79881 * 0.02562 * 17 16 15 19 19 C 1.38156 * 119.74950 * 359.85587 * 18 17 16 20 20 F 1.35097 * 119.76028 * 179.97438 * 19 18 17 21 21 C 1.37627 * 122.55147 * 18.10754 * 15 14 13 22 22 C 1.50626 * 122.56802 * 358.86391 * 21 15 14 23 23 H 1.08997 * 109.47079 * 275.13659 * 1 2 3 24 24 H 1.08997 * 109.47380 * 35.13946 * 1 2 3 25 25 H 1.09003 * 109.46863 * 155.14219 * 1 2 3 26 26 H 0.96995 * 119.99658 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.68027 * 69.79488 * 13 11 2 28 28 H 1.09008 * 109.67922 * 309.24621 * 13 11 2 29 29 H 1.08993 * 109.25727 * 188.52618 * 14 13 11 30 30 H 1.08989 * 109.22864 * 69.06587 * 14 13 11 31 31 H 1.08005 * 119.69392 * 0.61899 * 16 15 14 32 32 H 1.08003 * 120.10390 * 179.97438 * 17 16 15 33 33 H 1.08013 * 120.12649 * 180.13591 * 18 17 16 34 34 H 1.09002 * 109.25031 * 138.29122 * 22 21 15 35 35 H 1.09007 * 109.24809 * 257.70127 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1788 1.2152 -0.3262 5 6 1.5210 2.3503 0.4191 6 7 0.3883 2.2832 1.0862 7 14 2.2824 4.0126 0.0363 8 1 1.8671 4.4464 -1.3218 9 1 1.8230 5.0096 1.0365 10 1 3.7624 3.9033 0.0901 11 6 2.1975 -1.2687 0.0006 12 1 3.2699 -1.0740 -0.0089 13 6 1.8305 -2.0762 1.2512 14 6 2.7764 -3.2715 1.3478 15 6 2.8084 -4.0280 0.0455 16 6 3.3032 -5.3260 0.0634 17 6 3.3706 -6.0678 -1.0975 18 6 2.9430 -5.5166 -2.2907 19 6 2.4480 -4.2269 -2.3116 20 9 2.0305 -3.6877 -3.4779 21 6 2.3763 -3.4793 -1.1404 22 6 1.8123 -2.0856 -1.2310 23 1 -0.3633 0.0920 1.0235 24 1 -0.3634 0.8403 -0.5915 25 1 -0.3633 -0.9325 -0.4320 26 1 -0.0508 3.0969 1.3794 27 1 0.8016 -2.4276 1.1724 28 1 1.9384 -1.4503 2.1370 29 1 2.4355 -3.9365 2.1412 30 1 3.7800 -2.9171 1.5823 31 1 3.6378 -5.7582 0.9949 32 1 3.7572 -7.0760 -1.0744 33 1 2.9914 -6.0935 -3.2026 34 1 2.2036 -1.5968 -2.1233 35 1 0.7258 -2.1414 -1.3000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171000888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:39 Heat of formation + Delta-G solvation = -24.223416 kcal Electronic energy + Delta-G solvation = -18221.661788 eV Core-core repulsion = 15326.441068 eV Total energy + Delta-G solvation = -2895.220720 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.86951 -40.85539 -38.24563 -35.64989 -33.32915 -32.58711 -30.54207 -29.19602 -28.06581 -25.38131 -24.30058 -22.96484 -22.58339 -20.02545 -18.84683 -18.20747 -17.38689 -17.07100 -16.61437 -16.47224 -15.80368 -15.37597 -15.15250 -14.74336 -14.46031 -14.33748 -14.08385 -13.78254 -13.55580 -12.95515 -12.84316 -12.72314 -12.64410 -12.37678 -12.33235 -12.08470 -12.06108 -11.62994 -11.53218 -11.27121 -10.63398 -9.59581 -9.48796 -8.81430 -7.83346 -5.29100 0.24513 0.32185 1.45226 1.47551 1.55313 2.49674 2.66890 3.28326 3.33973 3.47596 3.73912 3.96022 4.02706 4.07950 4.16650 4.35704 4.46224 4.52874 4.58345 4.64717 4.82492 4.87781 4.98073 5.05837 5.11191 5.17643 5.23573 5.30580 5.44177 5.45848 5.50137 5.63071 5.66543 5.69568 6.03998 6.31573 7.14042 7.86698 8.30670 9.20255 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.005851 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.337104 B = 4784.174817 C = 5119.809543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.612 5.612 3 C -0.265 4.265 4 H 0.069 0.931 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.288 1.288 9 H -0.293 1.293 10 H -0.269 1.269 11 C 0.179 3.821 12 H 0.056 0.944 13 C -0.124 4.124 14 C -0.070 4.070 15 C -0.057 4.057 16 C -0.125 4.125 17 C -0.089 4.089 18 C -0.159 4.159 19 C 0.066 3.934 20 F -0.155 7.155 21 C -0.119 4.119 22 C -0.084 4.084 23 H 0.007 0.993 24 H 0.012 0.988 25 H 0.025 0.975 26 H 0.248 0.752 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.053 0.947 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.058 -18.112 -2.101 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.334 5.334 3 C -0.395 4.395 4 H 0.087 0.913 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.194 1.194 11 C 0.072 3.928 12 H 0.075 0.925 13 C -0.163 4.163 14 C -0.107 4.107 15 C -0.057 4.057 16 C -0.143 4.143 17 C -0.107 4.107 18 C -0.177 4.177 19 C 0.047 3.953 20 F -0.134 7.134 21 C -0.121 4.121 22 C -0.123 4.123 23 H 0.025 0.975 24 H 0.031 0.969 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.177 0.823 32 H 0.187 0.813 33 H 0.170 0.830 34 H 0.071 0.929 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.945 -17.940 -2.088 19.015 hybrid contribution -0.264 1.657 -0.563 1.770 sum 5.682 -16.283 -2.652 17.448 Atomic orbital electron populations 1.20458 0.83013 0.95391 0.97587 1.44170 1.01970 1.01290 1.85944 1.19562 0.97131 0.86338 1.36447 0.91325 1.25704 0.98616 1.01546 0.98878 1.70249 1.20278 1.27167 1.40770 0.85267 0.78335 0.79761 0.76995 1.21473 1.21937 1.19377 1.20396 0.95053 0.84721 0.92638 0.92543 1.21963 0.99212 0.96543 0.98601 1.20494 1.00507 0.95730 0.94019 1.19746 0.96956 0.95311 0.93702 1.21568 0.99539 0.92727 1.00424 1.21316 0.97537 1.01224 0.90593 1.21344 1.01819 0.92961 1.01588 1.18121 1.02326 0.94049 0.80799 1.91429 1.88367 1.86720 1.46889 1.19765 1.03049 0.96266 0.92978 1.20739 1.00126 0.91598 0.99811 0.97494 0.96880 0.95642 0.94279 0.93037 0.93039 0.88040 0.89525 0.82347 0.81337 0.82956 0.92858 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.35 8.23 127.77 1.05 10.40 16 2 N -0.61 -31.81 2.83 -702.70 -1.99 -33.80 16 3 C -0.26 -15.02 9.62 84.04 0.81 -14.21 16 4 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 5 C -0.05 -3.01 5.06 84.86 0.43 -2.58 16 6 N -0.94 -56.66 10.67 21.65 0.23 -56.43 16 7 Si 0.97 46.15 29.58 68.60 2.03 48.18 16 8 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 9 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 C 0.18 7.55 2.62 45.01 0.12 7.67 16 12 H 0.06 2.44 7.82 -2.39 -0.02 2.42 16 13 C -0.12 -4.45 5.13 30.61 0.16 -4.30 16 14 C -0.07 -1.83 5.67 29.74 0.17 -1.66 16 15 C -0.06 -1.50 5.74 -19.86 -0.11 -1.62 16 16 C -0.12 -2.36 9.60 22.36 0.21 -2.15 16 17 C -0.09 -1.50 10.05 22.19 0.22 -1.28 16 18 C -0.16 -3.42 10.02 22.25 0.22 -3.20 16 19 C 0.07 1.96 7.22 22.47 0.16 2.12 16 20 F -0.16 -5.13 16.46 44.97 0.74 -4.39 16 21 C -0.12 -3.80 5.74 -19.82 -0.11 -3.91 16 22 C -0.08 -3.23 4.77 29.73 0.14 -3.09 16 23 H 0.01 0.38 7.40 -2.39 -0.02 0.36 16 24 H 0.01 0.71 7.22 -2.39 -0.02 0.69 16 25 H 0.03 1.15 6.25 -2.39 -0.01 1.14 16 26 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.05 1.88 7.97 -2.38 -0.02 1.86 16 28 H 0.05 2.05 8.14 -2.38 -0.02 2.04 16 29 H 0.10 2.06 8.12 -2.39 -0.02 2.05 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.16 1.96 8.05 -2.91 -0.02 1.93 16 32 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.15 2.53 8.06 -2.90 -0.02 2.50 16 34 H 0.05 2.20 7.84 -2.39 -0.02 2.18 16 35 H 0.06 2.57 6.31 -2.38 -0.02 2.56 16 Total: -1.00 -66.55 285.85 5.56 -61.00 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.08 Total: 3.25 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 3.47 Total: -17.81 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -1.76 Total: -90.23 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.74 Total: -4.39 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -66.55 5.56 -61.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171000888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.773 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds