Wall clock time and date at job start Mon Mar 30 2020 18:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46828 * 2 1 4 4 C 1.50697 * 109.47105 * 119.99799 * 2 1 3 5 5 H 1.08001 * 119.99627 * 114.36003 * 4 2 1 6 6 C 1.37870 * 120.00197 * 294.37026 * 4 2 1 7 7 N 1.31513 * 120.00353 * 156.85155 * 6 4 2 8 8 Si 1.86804 * 120.00006 * 336.84464 * 6 4 2 9 9 H 1.48500 * 109.47181 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.46857 * 300.00527 * 8 6 4 11 11 H 1.48497 * 109.46742 * 60.00377 * 8 6 4 12 12 N 1.46895 * 109.46973 * 240.00386 * 2 1 3 13 13 C 1.46901 * 111.00270 * 84.99941 * 12 2 1 14 14 H 1.09001 * 110.73044 * 325.69881 * 13 12 2 15 15 C 1.54348 * 110.82101 * 202.28768 * 13 12 2 16 16 C 1.51375 * 105.17022 * 215.43851 * 15 13 12 17 17 C 1.38510 * 130.38215 * 197.16101 * 16 15 13 18 18 C 1.38117 * 120.27481 * 179.97438 * 17 16 15 19 19 C 1.38220 * 119.95940 * 0.03654 * 18 17 16 20 20 C 1.38329 * 119.90612 * 359.97438 * 19 18 17 21 21 F 1.35096 * 119.91588 * 180.02562 * 20 19 18 22 22 C 1.38174 * 109.75904 * 17.18073 * 16 15 13 23 23 C 1.51676 * 109.85176 * 359.84847 * 22 16 15 24 24 H 1.09002 * 109.47128 * 53.10799 * 1 2 3 25 25 H 1.09001 * 109.47164 * 173.10076 * 1 2 3 26 26 H 1.08994 * 109.47265 * 293.10048 * 1 2 3 27 27 H 0.97008 * 119.99677 * 354.92754 * 7 6 4 28 28 H 1.00902 * 111.00203 * 321.04036 * 12 2 1 29 29 H 1.08989 * 110.30690 * 334.36353 * 15 13 12 30 30 H 1.08999 * 110.29995 * 96.51878 * 15 13 12 31 31 H 1.08006 * 119.86455 * 0.02562 * 17 16 15 32 32 H 1.07998 * 120.01780 * 179.97438 * 18 17 16 33 33 H 1.07998 * 120.03902 * 179.97438 * 19 18 17 34 34 H 1.09008 * 110.49166 * 224.14545 * 23 22 16 35 35 H 1.08993 * 110.25900 * 101.89391 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5761 -1.6385 1.1339 6 6 1.7976 -0.1755 2.4793 7 7 1.8072 -0.9529 3.5400 8 14 1.4662 1.6535 2.6649 9 1 1.2472 1.9740 4.0983 10 1 2.6321 2.4216 2.1589 11 1 0.2565 2.0189 1.8851 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2725 0.9509 -2.3044 15 6 2.0467 -0.5609 -3.6762 16 6 2.9480 0.2114 -4.6156 17 6 3.0521 0.1695 -5.9962 18 6 3.9603 0.9784 -6.6509 19 6 4.7701 1.8334 -5.9273 20 6 4.6688 1.8774 -4.5484 21 9 5.4599 2.7134 -3.8411 22 6 3.7569 1.0652 -3.8904 23 6 3.4531 0.9295 -2.4106 24 1 -0.3633 0.6169 -0.8219 25 1 -0.3633 -1.0202 -0.1234 26 1 -0.3633 0.4032 0.9452 27 1 1.9060 -1.9125 3.4372 28 1 1.4496 -1.4979 -1.4101 29 1 2.4291 -1.5710 -3.5302 30 1 1.0303 -0.5935 -4.0687 31 1 2.4199 -0.4978 -6.5632 32 1 4.0382 0.9420 -7.7274 33 1 5.4810 2.4661 -6.4379 34 1 3.3943 1.9118 -1.9414 35 1 4.2152 0.3217 -1.9230 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171783968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:48 Heat of formation + Delta-G solvation = -44.460089 kcal Electronic energy + Delta-G solvation = -17775.472577 eV Core-core repulsion = 14879.374328 eV Total energy + Delta-G solvation = -2896.098248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.88387 -41.03588 -38.28460 -35.95585 -34.06892 -31.93556 -30.97242 -28.33635 -28.05284 -26.75710 -23.20676 -22.52280 -21.90633 -21.29174 -19.56530 -18.13894 -17.44049 -17.19908 -16.58906 -16.44252 -15.95715 -15.50113 -15.36964 -14.69085 -14.44690 -14.20209 -13.87153 -13.84104 -13.77297 -13.39822 -13.25104 -12.76701 -12.39613 -12.30777 -12.17668 -12.06881 -11.98555 -11.76515 -11.64751 -11.15091 -10.36685 -9.63269 -9.59516 -9.16548 -8.67937 -6.27511 0.19372 0.24012 1.43511 1.50780 1.69624 2.48798 2.60979 3.03553 3.25511 3.30755 3.36235 3.67487 3.97162 4.06270 4.19561 4.32188 4.42844 4.49856 4.54173 4.66050 4.73059 4.76727 4.80510 4.85099 4.92401 5.07090 5.16329 5.17680 5.25264 5.39147 5.44946 5.55009 5.90278 5.95910 6.11452 6.42640 6.72088 6.79159 7.46059 8.65305 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032584 B = 0.005484 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.118662 B = 5104.148886 C = 5597.855133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.192 3.808 3 H 0.021 0.979 4 C -0.591 4.591 5 H 0.022 0.978 6 C -0.015 4.015 7 N -0.935 5.935 8 Si 1.074 2.926 9 H -0.287 1.287 10 H -0.274 1.274 11 H -0.247 1.247 12 N -0.677 5.677 13 C 0.086 3.914 14 H 0.053 0.947 15 C -0.075 4.075 16 C -0.070 4.070 17 C -0.114 4.114 18 C -0.085 4.085 19 C -0.156 4.156 20 C 0.079 3.921 21 F -0.157 7.157 22 C -0.149 4.149 23 C -0.071 4.071 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.254 0.746 28 H 0.340 0.660 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.157 0.843 34 H 0.056 0.944 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 4.934 -23.346 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.629 4.629 5 H 0.041 0.959 6 C -0.214 4.214 7 N -0.571 5.571 8 Si 0.896 3.104 9 H -0.213 1.213 10 H -0.199 1.199 11 H -0.171 1.171 12 N -0.307 5.307 13 C -0.025 4.025 14 H 0.071 0.929 15 C -0.112 4.112 16 C -0.071 4.071 17 C -0.132 4.132 18 C -0.102 4.102 19 C -0.175 4.175 20 C 0.060 3.940 21 F -0.135 7.135 22 C -0.150 4.150 23 C -0.109 4.109 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.159 0.841 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.176 0.824 32 H 0.190 0.810 33 H 0.174 0.826 34 H 0.075 0.925 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.739 6.214 -22.026 22.897 hybrid contribution -0.055 -1.254 -0.259 1.282 sum 0.684 4.960 -22.285 22.840 Atomic orbital electron populations 1.22663 0.99083 1.00669 1.00442 1.19323 0.90320 0.93640 0.88525 0.96075 1.22098 1.38684 1.09546 0.92577 0.95948 1.26939 0.93360 1.09053 0.92023 1.70964 1.47588 1.05639 1.32913 0.83678 0.78648 0.71671 0.76451 1.21307 1.19947 1.17114 1.60557 1.58186 1.09230 1.02770 1.22156 0.95216 0.94559 0.90543 0.92870 1.21198 0.99892 0.98847 0.91219 1.20579 0.96333 0.95744 0.94394 1.21082 0.99822 1.00347 0.91909 1.21339 0.93493 0.93653 1.01731 1.21364 1.02993 1.02692 0.90419 1.17798 0.92817 0.92590 0.90810 1.91438 1.72710 1.69946 1.79449 1.20791 0.98347 0.99024 0.96880 1.21046 0.98494 1.00163 0.91197 0.92903 0.93327 0.93885 0.93707 0.84110 0.88828 0.88054 0.82443 0.80972 0.82568 0.92510 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.95 8.90 71.98 0.64 -6.31 16 2 C 0.19 8.89 2.05 44.17 0.09 8.99 16 3 H 0.02 1.02 6.41 -2.39 -0.02 1.00 16 4 C -0.59 -33.97 9.05 25.60 0.23 -33.74 16 5 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 6 C -0.01 -0.87 5.19 84.65 0.44 -0.43 16 7 N -0.94 -59.17 13.70 21.44 0.29 -58.88 16 8 Si 1.07 50.85 26.44 68.60 1.81 52.67 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.25 -10.34 6.15 99.48 0.61 -9.73 16 12 N -0.68 -26.85 6.03 -468.64 -2.83 -29.68 16 13 C 0.09 2.77 3.13 45.83 0.14 2.92 16 14 H 0.05 1.71 7.30 -2.39 -0.02 1.69 16 15 C -0.07 -1.81 6.23 30.52 0.19 -1.62 16 16 C -0.07 -1.68 6.14 -19.60 -0.12 -1.80 16 17 C -0.11 -1.95 10.04 22.31 0.22 -1.73 16 18 C -0.08 -1.26 10.04 22.24 0.22 -1.04 16 19 C -0.16 -3.06 10.02 22.29 0.22 -2.84 16 20 C 0.08 2.18 7.30 22.41 0.16 2.34 16 21 F -0.16 -4.87 17.25 44.97 0.78 -4.10 16 22 C -0.15 -4.41 6.13 -19.45 -0.12 -4.53 16 23 C -0.07 -2.47 6.47 30.62 0.20 -2.27 16 24 H 0.05 1.81 7.59 -2.39 -0.02 1.79 16 25 H 0.05 1.92 8.00 -2.39 -0.02 1.90 16 26 H 0.04 1.87 5.48 -2.39 -0.01 1.86 16 27 H 0.25 16.28 8.73 -92.70 -0.81 15.47 16 28 H 0.34 12.39 8.10 -89.69 -0.73 11.67 16 29 H 0.09 2.28 8.06 -2.39 -0.02 2.26 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.07 2.76 8.08 -2.39 -0.02 2.74 16 Total: -1.00 -68.46 290.72 2.82 -65.63 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.24 Total: 16.41 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 2.53 Total: -42.06 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -2.53 Total: -88.56 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.10 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.81 Total: 52.67 kcal Total: -68.46 2.82 -65.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171783968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.173 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds