Wall clock time and date at job start Mon Mar 30 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.40040 * 119.99978 * 180.02562 * 2 1 3 5 5 C 1.39415 * 120.40935 * 359.97438 * 4 2 1 6 6 C 1.38285 * 118.44608 * 179.97438 * 5 4 2 7 7 C 1.39084 * 119.17061 * 0.02562 * 6 5 4 8 8 N 1.39315 * 119.62657 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47282 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.47262 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47306 * 179.97438 * 11 10 9 13 13 H 1.07992 * 119.99656 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00028 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99921 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00018 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47067 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47438 * 120.00237 * 16 14 12 19 19 H 1.48507 * 109.47153 * 240.00354 * 16 14 12 20 20 N 1.32324 * 120.75293 * 0.02562 * 7 6 5 21 21 C 1.31993 * 121.69236 * 359.68765 * 20 7 6 22 22 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 23 23 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 24 24 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 25 25 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 26 26 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 27 27 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 28 28 H 1.07994 * 120.77714 * 359.96692 * 5 4 2 29 29 H 1.07995 * 120.41403 * 179.97438 * 6 5 4 30 30 H 0.96996 * 120.00636 * 179.97438 * 8 7 6 31 31 H 1.09004 * 109.47187 * 300.00046 * 9 8 7 32 32 H 1.09000 * 109.46754 * 59.99734 * 9 8 7 33 33 H 1.09004 * 109.47086 * 300.00155 * 10 9 8 34 34 H 1.09000 * 109.46886 * 60.00100 * 10 9 8 35 35 H 1.08998 * 109.47439 * 300.00514 * 11 10 9 36 36 H 1.09000 * 109.47043 * 60.00252 * 11 10 9 37 37 H 0.97004 * 119.99881 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.62221 * 180.31024 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1652 -1.2128 -0.0005 5 6 1.4767 -2.4251 -0.0005 6 6 2.2088 -3.5983 -0.0016 7 6 3.5980 -3.5305 -0.0021 8 7 4.3449 -4.7066 -0.0027 9 6 3.6665 -6.0051 -0.0022 10 6 4.7088 -7.1251 -0.0036 11 6 4.0004 -8.4811 -0.0024 12 6 5.0272 -9.5843 -0.0045 13 1 6.0796 -9.3423 -0.0060 14 6 4.6228 -10.9024 -0.0033 15 7 3.3410 -11.1970 -0.0009 16 14 5.8954 -12.2698 -0.0051 17 1 7.2575 -11.6783 -0.0083 18 1 5.7223 -13.1087 1.2079 19 1 5.7181 -13.1095 -1.2171 20 7 4.2184 -2.3618 -0.0011 21 6 3.5515 -1.2227 -0.0056 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8900 0.5139 25 1 2.3792 1.5834 1.0276 26 1 3.1499 1.1384 -0.5139 27 1 1.6084 2.0284 -0.5139 28 1 0.3970 -2.4475 0.0004 29 1 1.7081 -4.5552 -0.0013 30 1 5.3140 -4.6657 -0.0034 31 1 3.0435 -6.0892 0.8883 32 1 3.0421 -6.0892 -0.8917 33 1 5.3315 -7.0408 -0.8943 34 1 5.3335 -7.0411 0.8857 35 1 3.3780 -8.5652 0.8884 36 1 3.3755 -8.5653 -0.8915 37 1 3.0565 -12.1244 -0.0005 38 1 4.0920 -0.2877 -0.0097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:02 Heat of formation + Delta-G solvation = 39.177858 kcal Electronic energy + Delta-G solvation = -17095.173337 eV Core-core repulsion = 14358.454958 eV Total energy + Delta-G solvation = -2736.718379 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18537 -37.28731 -35.58725 -33.39636 -32.09948 -31.37495 -29.08691 -28.36402 -26.48402 -24.45260 -23.42167 -22.57958 -20.83998 -20.28300 -17.64176 -16.93030 -16.42884 -16.07588 -15.29538 -14.80989 -14.72208 -14.57283 -14.35495 -13.68426 -13.57809 -13.24888 -12.87979 -12.63254 -12.33847 -12.14635 -11.96877 -11.77847 -11.73177 -10.96022 -10.67693 -10.55677 -10.54087 -9.85098 -9.50056 -9.47899 -9.29053 -9.10783 -8.58286 -8.37379 -6.70406 -6.02362 -4.04681 1.42210 1.76772 3.02440 3.30513 3.38048 3.42194 3.61577 4.13692 4.45149 4.71760 4.80546 4.90599 4.97845 5.11413 5.26723 5.33927 5.34065 5.39637 5.45831 5.47719 5.70026 5.76601 5.85494 6.03156 6.13064 6.14716 6.44514 6.62208 6.72019 7.00045 7.10962 7.33586 7.39888 7.63397 7.76025 7.96916 8.00094 8.38772 8.48219 9.02185 9.59666 11.09084 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.065125 B = 0.003065 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.840364 B = 9133.877724 C = 9527.364438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.642 5.642 3 C 0.099 3.901 4 C 0.093 3.907 5 C -0.105 4.105 6 C -0.192 4.192 7 C 0.363 3.637 8 N -0.728 5.728 9 C 0.128 3.872 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.515 5.515 21 C 0.077 3.923 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.401 0.599 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 22.921 -0.006 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.359 5.359 3 C -0.044 4.044 4 C -0.009 4.009 5 C -0.135 4.135 6 C -0.218 4.218 7 C 0.126 3.874 8 N -0.361 5.361 9 C 0.004 3.996 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.232 5.232 21 C -0.085 4.085 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.235 0.765 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.882 22.745 -0.002 23.263 hybrid contribution -0.026 -0.807 -0.001 0.808 sum -4.908 21.938 -0.002 22.480 Atomic orbital electron populations 1.21524 0.79981 1.02237 1.00704 1.45998 1.04364 1.02514 1.83061 1.21531 0.97065 0.85076 1.00765 1.18542 0.92486 0.86288 1.03597 1.20875 0.99733 0.90441 1.02463 1.21309 0.92935 0.99185 1.08339 1.18315 0.88350 0.86362 0.94403 1.44715 1.08415 1.02021 1.80987 1.21602 0.96459 0.80980 1.00576 1.21849 0.97419 0.95432 1.01097 1.19034 0.95799 0.89002 0.97504 1.21259 0.93097 0.90948 1.50563 0.92571 1.25024 0.95248 0.98934 0.95290 1.69971 1.14105 1.18506 1.50873 0.86527 0.81777 0.82065 0.77583 1.19729 1.20999 1.21002 1.67039 1.40189 0.97111 1.18833 1.21891 0.89170 0.95450 1.01978 0.93879 0.91954 0.91655 0.93802 0.91581 0.91914 0.85275 0.84843 0.76458 0.92554 0.92554 0.92659 0.92668 0.96325 0.96328 0.93016 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 10.22 59.85 0.61 1.33 16 2 N -0.64 -6.17 3.42 -187.35 -0.64 -6.81 16 3 C 0.10 0.69 10.21 59.85 0.61 1.30 16 4 C 0.09 1.14 6.57 -83.52 -0.55 0.60 16 5 C -0.11 -1.32 9.30 -39.13 -0.36 -1.68 16 6 C -0.19 -2.77 9.32 -39.25 -0.37 -3.14 16 7 C 0.36 5.81 7.65 -154.80 -1.18 4.63 16 8 N -0.73 -11.74 5.74 -60.36 -0.35 -12.09 16 9 C 0.13 2.18 4.89 -4.04 -0.02 2.16 16 10 C -0.12 -2.40 5.27 -26.74 -0.14 -2.54 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 N -0.52 -8.12 10.39 -12.23 -0.13 -8.25 16 21 C 0.08 1.01 10.38 -17.33 -0.18 0.83 16 22 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 24 H 0.06 0.47 6.25 -51.93 -0.32 0.14 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.44 6.21 -51.93 -0.32 0.12 16 27 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 28 H 0.13 1.31 6.27 -52.49 -0.33 0.98 16 29 H 0.13 1.83 6.70 -52.49 -0.35 1.48 16 30 H 0.40 6.25 8.60 -40.82 -0.35 5.90 16 31 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 32 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.15 1.57 6.14 -52.49 -0.32 1.25 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -31.50 314.11 -8.54 -40.03 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.74 Total: 1.25 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -2.13 Total: -9.46 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.38 Total: -53.15 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.50 -8.54 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.209 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds