Wall clock time and date at job start Mon Mar 30 2020 18:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86795 * 120.00236 * 2 1 4 4 H 1.48500 * 109.47044 * 269.99197 * 3 2 1 5 5 H 1.48504 * 109.47237 * 29.99445 * 3 2 1 6 6 H 1.48502 * 109.47067 * 149.99349 * 3 2 1 7 7 C 1.38763 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99602 * 0.02562 * 7 2 1 9 9 O 1.34918 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.34307 * 116.99883 * 180.02562 * 9 7 2 11 11 O 1.21218 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00179 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47181 * 180.02562 * 13 12 10 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.97007 * 119.99894 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46805 * 59.99895 * 12 10 9 24 24 H 1.08993 * 109.46945 * 300.00059 * 12 10 9 25 25 H 1.08999 * 109.47370 * 60.00219 * 13 12 10 26 26 H 1.09006 * 109.47017 * 300.00060 * 13 12 10 27 27 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 28 28 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 29 29 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 30 30 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 32 32 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 33 33 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4961 2.0462 -1.4001 5 1 1.4459 2.6527 0.6999 6 1 3.5459 1.4401 0.7002 7 6 2.0082 -1.2018 0.0005 8 1 1.4681 -2.1370 0.0005 9 8 3.3574 -1.2018 0.0011 10 6 3.9670 -2.3985 0.0010 11 8 3.3068 -3.4151 0.0001 12 6 5.4720 -2.4775 0.0010 13 6 5.9057 -3.9447 0.0003 14 6 7.4336 -4.0249 0.0010 15 8 7.8387 -5.3953 -0.0003 16 6 9.1748 -5.6436 0.0006 17 6 9.6385 -6.9512 0.0000 18 6 10.9971 -7.2010 0.0004 19 6 11.8946 -6.1492 0.0019 20 6 11.4351 -4.8451 0.0021 21 6 10.0774 -4.5901 0.0017 22 1 -0.4850 0.8401 -0.0004 23 1 5.8617 -1.9834 0.8910 24 1 5.8617 -1.9834 -0.8889 25 1 5.5160 -4.4384 -0.8899 26 1 5.5159 -4.4392 0.8901 27 1 7.8229 -3.5313 0.8914 28 1 7.8238 -3.5303 -0.8885 29 1 8.9378 -7.7730 0.0037 30 1 11.3586 -8.2188 0.0004 31 1 12.9564 -6.3467 0.0026 32 1 12.1381 -4.0254 0.0029 33 1 9.7189 -3.5713 0.0022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057504229.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:32 Heat of formation + Delta-G solvation = -102.122354 kcal Electronic energy + Delta-G solvation = -16877.948584 eV Core-core repulsion = 13869.258461 eV Total energy + Delta-G solvation = -3008.690123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25861 -39.22629 -37.65673 -35.64901 -33.56244 -32.29955 -31.22132 -30.04673 -27.66641 -25.25902 -23.25594 -22.45389 -21.38510 -19.69694 -18.36027 -17.95613 -16.85040 -16.45109 -16.18281 -15.79404 -15.18230 -14.84857 -14.64486 -13.89729 -13.71205 -13.66252 -13.31868 -12.60721 -12.56342 -12.09927 -12.06342 -11.73424 -11.50375 -11.44873 -11.12736 -10.88173 -10.59784 -10.48014 -10.37641 -9.70928 -9.23732 -9.19174 -8.68708 -8.39124 -6.37167 -4.13103 1.10774 1.23819 2.97300 3.13133 3.23791 3.34286 3.40195 3.57543 4.16261 4.24740 4.59005 4.67033 4.87109 4.89304 4.97842 5.09374 5.09917 5.15761 5.24501 5.34713 5.47742 5.48741 5.70570 5.77759 6.09315 6.16265 6.18258 6.29751 6.32395 6.43876 6.57912 7.28603 7.73973 8.03562 8.61876 9.01162 9.67835 10.71472 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.055972 B = 0.003303 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.129042 B = 8475.300894 C = 8949.681746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.382 4.382 8 H 0.109 0.891 9 O -0.253 6.253 10 C 0.409 3.591 11 O -0.539 6.539 12 C -0.101 4.101 13 C -0.105 4.105 14 C 0.061 3.939 15 O -0.312 6.312 16 C 0.135 3.865 17 C -0.156 4.156 18 C -0.082 4.082 19 C -0.165 4.165 20 C -0.081 4.081 21 C -0.211 4.211 22 H 0.279 0.721 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.273 -7.517 0.022 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.458 4.458 8 H 0.127 0.873 9 O -0.162 6.162 10 C 0.254 3.746 11 O -0.434 6.434 12 C -0.139 4.139 13 C -0.142 4.142 14 C -0.014 4.014 15 O -0.225 6.225 16 C 0.089 3.911 17 C -0.174 4.174 18 C -0.100 4.100 19 C -0.183 4.183 20 C -0.099 4.099 21 C -0.230 4.230 22 H 0.090 0.910 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.719 -7.762 0.026 24.009 hybrid contribution 0.263 1.024 -0.015 1.058 sum 22.982 -6.738 0.011 23.950 Atomic orbital electron populations 1.69612 1.05722 1.28381 1.47774 1.24561 0.95021 0.98690 0.95614 0.86203 0.80249 0.81495 0.78879 1.19886 1.20778 1.18444 1.20657 0.76210 0.96967 1.51980 0.87327 1.83510 1.23974 1.31437 1.77271 1.22831 0.90470 0.82642 0.78620 1.90616 1.67112 1.36270 1.49375 1.20950 0.91040 0.97133 1.04796 1.21255 0.91372 0.96038 1.05581 1.22885 0.96579 0.80455 1.01515 1.86093 1.19713 1.28652 1.88062 1.19098 0.82787 0.94053 0.95154 1.20501 0.95969 0.94444 1.06509 1.20968 0.92138 0.99311 0.97598 1.21050 0.99692 0.92732 1.04856 1.20960 0.94743 0.96966 0.97232 1.21335 0.94059 0.98780 1.08826 0.91045 0.88707 0.88709 0.89838 0.89850 0.91747 0.91754 0.85156 0.85482 0.86077 0.85881 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.09 13.96 55.48 0.77 -25.31 16 2 C 0.06 1.86 5.49 -17.52 -0.10 1.76 16 3 Si 0.91 21.33 28.62 -169.99 -4.86 16.46 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.38 -11.44 10.10 30.93 0.31 -11.12 16 8 H 0.11 3.59 7.09 -52.49 -0.37 3.22 16 9 O -0.25 -6.64 8.58 -20.69 -0.18 -6.82 16 10 C 0.41 9.41 7.91 36.01 0.28 9.69 16 11 O -0.54 -14.21 15.22 -19.06 -0.29 -14.50 16 12 C -0.10 -1.56 5.81 -27.88 -0.16 -1.72 16 13 C -0.10 -1.50 4.87 -26.73 -0.13 -1.63 16 14 C 0.06 0.69 4.74 37.16 0.18 0.87 16 15 O -0.31 -4.12 10.14 -19.42 -0.20 -4.31 16 16 C 0.13 1.60 6.69 -39.22 -0.26 1.34 16 17 C -0.16 -1.65 9.99 -39.43 -0.39 -2.04 16 18 C -0.08 -0.72 10.04 -39.61 -0.40 -1.11 16 19 C -0.17 -1.38 10.04 -39.56 -0.40 -1.78 16 20 C -0.08 -0.72 10.04 -39.61 -0.40 -1.11 16 21 C -0.21 -2.17 9.04 -39.44 -0.36 -2.52 16 22 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 26 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 28 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 31 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 1.14 6.30 -52.48 -0.33 0.80 16 LS Contribution 294.33 15.07 4.44 4.44 Total: -1.00 -33.68 294.33 -6.15 -39.83 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.01 Total: -0.40 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.82 Total: -9.38 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.77 Total: -25.31 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.66 Total: -25.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.68 -6.15 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057504229.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.288 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds