Wall clock time and date at job start Mon Mar 30 2020 18:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86795 * 120.00236 * 2 1 4 4 H 1.48500 * 109.47044 * 269.99197 * 3 2 1 5 5 H 1.48504 * 109.47237 * 29.99445 * 3 2 1 6 6 H 1.48502 * 109.47067 * 149.99349 * 3 2 1 7 7 C 1.38763 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99602 * 0.02562 * 7 2 1 9 9 O 1.34918 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.34307 * 116.99883 * 180.02562 * 9 7 2 11 11 O 1.21218 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00179 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47181 * 180.02562 * 13 12 10 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.97007 * 119.99894 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46805 * 59.99895 * 12 10 9 24 24 H 1.08993 * 109.46945 * 300.00059 * 12 10 9 25 25 H 1.08999 * 109.47370 * 60.00219 * 13 12 10 26 26 H 1.09006 * 109.47017 * 300.00060 * 13 12 10 27 27 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 28 28 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 29 29 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 30 30 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 32 32 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 33 33 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4961 2.0462 -1.4001 5 1 1.4459 2.6527 0.6999 6 1 3.5459 1.4401 0.7002 7 6 2.0082 -1.2018 0.0005 8 1 1.4681 -2.1370 0.0005 9 8 3.3574 -1.2018 0.0011 10 6 3.9670 -2.3985 0.0010 11 8 3.3068 -3.4151 0.0001 12 6 5.4720 -2.4775 0.0010 13 6 5.9057 -3.9447 0.0003 14 6 7.4336 -4.0249 0.0010 15 8 7.8387 -5.3953 -0.0003 16 6 9.1748 -5.6436 0.0006 17 6 9.6385 -6.9512 0.0000 18 6 10.9971 -7.2010 0.0004 19 6 11.8946 -6.1492 0.0019 20 6 11.4351 -4.8451 0.0021 21 6 10.0774 -4.5901 0.0017 22 1 -0.4850 0.8401 -0.0004 23 1 5.8617 -1.9834 0.8910 24 1 5.8617 -1.9834 -0.8889 25 1 5.5160 -4.4384 -0.8899 26 1 5.5159 -4.4392 0.8901 27 1 7.8229 -3.5313 0.8914 28 1 7.8238 -3.5303 -0.8885 29 1 8.9378 -7.7730 0.0037 30 1 11.3586 -8.2188 0.0004 31 1 12.9564 -6.3467 0.0026 32 1 12.1381 -4.0254 0.0029 33 1 9.7189 -3.5713 0.0022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057504229.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:32 Heat of formation + Delta-G solvation = -123.202682 kcal Electronic energy + Delta-G solvation = -16878.862696 eV Core-core repulsion = 13869.258461 eV Total energy + Delta-G solvation = -3009.604235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25623 -40.96057 -38.47320 -37.56700 -34.88425 -34.48756 -31.91471 -30.83842 -29.02788 -27.11144 -24.26407 -23.27429 -22.36748 -21.34343 -20.15571 -19.20330 -18.58539 -17.55232 -17.13511 -16.74123 -16.73700 -16.46303 -15.79604 -15.29229 -14.99930 -14.63730 -14.33776 -14.27521 -13.86773 -13.57660 -13.26298 -13.12233 -12.50284 -12.43149 -12.42175 -12.28829 -12.22912 -11.85869 -11.65986 -11.58617 -11.15287 -10.84003 -9.92199 -9.14523 -8.55174 -6.42977 0.42415 0.52149 1.30554 1.34995 1.54093 1.59358 2.00909 2.28538 2.64307 2.88052 2.90817 3.81038 3.88734 3.91767 3.99421 4.09931 4.28983 4.37919 4.41383 4.42687 4.54016 4.60971 4.66138 4.80731 4.99919 5.12140 5.18309 5.40647 5.48899 5.51433 5.63225 5.88608 5.91242 6.49125 6.54670 6.82058 7.57962 8.58096 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.055972 B = 0.003303 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.129042 B = 8475.300894 C = 8949.681746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.245 1.245 7 C -0.412 4.412 8 H 0.053 0.947 9 O -0.257 6.257 10 C 0.405 3.595 11 O -0.581 6.581 12 C -0.087 4.087 13 C -0.100 4.100 14 C 0.067 3.933 15 O -0.338 6.338 16 C 0.106 3.894 17 C -0.177 4.177 18 C -0.085 4.085 19 C -0.166 4.166 20 C -0.086 4.086 21 C -0.219 4.219 22 H 0.289 0.711 23 H 0.132 0.868 24 H 0.132 0.868 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.082 -5.612 0.020 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.168 1.168 7 C -0.488 4.488 8 H 0.071 0.929 9 O -0.167 6.167 10 C 0.253 3.747 11 O -0.477 6.477 12 C -0.124 4.124 13 C -0.138 4.138 14 C -0.007 4.007 15 O -0.253 6.253 16 C 0.062 3.938 17 C -0.195 4.195 18 C -0.103 4.103 19 C -0.184 4.184 20 C -0.104 4.104 21 C -0.238 4.238 22 H 0.099 0.901 23 H 0.149 0.851 24 H 0.150 0.850 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 26.535 -5.889 0.023 27.180 hybrid contribution -0.886 0.227 -0.016 0.914 sum 25.649 -5.662 0.008 26.266 Atomic orbital electron populations 1.69720 1.07796 1.30293 1.48228 1.25681 0.96034 1.03032 0.94034 0.84995 0.79080 0.75221 0.79872 1.18334 1.19240 1.16818 1.20313 0.78010 0.95664 1.54775 0.92905 1.83522 1.21767 1.32937 1.78439 1.24567 0.93475 0.81153 0.75481 1.90604 1.68956 1.37570 1.50601 1.21126 0.84565 0.98453 1.08245 1.21148 0.93935 0.95064 1.03663 1.22812 0.93936 0.80408 1.03589 1.86030 1.20981 1.29488 1.88773 1.19373 0.82383 0.95078 0.97015 1.20729 0.97064 0.94306 1.07431 1.21294 0.91377 1.00878 0.96711 1.21451 1.01020 0.92483 1.03398 1.21339 0.94656 0.98076 0.96298 1.21566 0.94521 0.98993 1.08698 0.90081 0.85050 0.84963 0.91886 0.91920 0.89610 0.89595 0.85474 0.83190 0.83479 0.83381 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.26 13.96 21.63 0.30 -55.96 16 2 C 0.01 0.68 5.49 84.88 0.47 1.15 16 3 Si 0.99 43.05 28.62 68.60 1.96 45.01 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.24 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.41 -25.59 10.10 67.95 0.69 -24.90 16 8 H 0.05 3.77 7.09 -2.91 -0.02 3.75 16 9 O -0.26 -13.53 8.58 14.92 0.13 -13.41 16 10 C 0.41 18.78 7.91 71.24 0.56 19.34 16 11 O -0.58 -32.11 15.22 20.75 0.32 -31.79 16 12 C -0.09 -2.46 5.81 29.85 0.17 -2.28 16 13 C -0.10 -2.79 4.87 30.59 0.15 -2.64 16 14 C 0.07 1.39 4.74 71.98 0.34 1.73 16 15 O -0.34 -8.78 10.14 -92.40 -0.94 -9.71 16 16 C 0.11 2.43 6.69 22.51 0.15 2.58 16 17 C -0.18 -3.66 9.99 22.37 0.22 -3.43 16 18 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 19 C -0.17 -2.28 10.04 22.28 0.22 -2.06 16 20 C -0.09 -1.26 10.04 22.25 0.22 -1.03 16 21 C -0.22 -3.97 9.04 22.36 0.20 -3.77 16 22 H 0.29 15.88 8.31 -92.70 -0.77 15.11 16 23 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 24 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 25 H 0.06 1.98 8.10 -2.39 -0.02 1.97 16 26 H 0.06 1.98 8.10 -2.38 -0.02 1.96 16 27 H 0.09 1.41 7.66 -2.39 -0.02 1.40 16 28 H 0.09 1.41 7.66 -2.39 -0.02 1.39 16 29 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.14 2.05 6.30 -2.91 -0.02 2.03 16 Total: -1.00 -78.30 294.33 6.50 -71.80 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.10 Total: 10.47 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 3.63 Total: -16.41 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.30 Total: -55.96 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -0.49 Total: -54.92 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.96 Total: 45.01 kcal Total: -78.30 6.50 -71.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057504229.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.400 kcal (2) G-P(sol) polarization free energy of solvation -78.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds