Wall clock time and date at job start Mon Mar 30 2020 18:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35339 * 127.25255 * 2 1 4 4 N 1.35043 * 107.24453 * 180.26061 * 3 2 1 5 5 C 1.46505 * 124.88115 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47184 * 121.42247 * 5 4 3 7 7 C 1.50696 * 115.54896 * 276.94003 * 6 5 4 8 8 H 1.07998 * 120.00082 * 143.91923 * 7 6 5 9 9 C 1.37882 * 119.99877 * 323.91608 * 7 6 5 10 10 N 1.31512 * 120.00089 * 332.99253 * 9 7 6 11 11 Si 1.86802 * 119.99751 * 152.99325 * 9 7 6 12 12 H 1.48498 * 109.47043 * 5.00066 * 11 9 7 13 13 H 1.48496 * 109.47194 * 125.00414 * 11 9 7 14 14 H 1.48502 * 109.46748 * 245.00305 * 11 9 7 15 15 C 1.53001 * 117.49657 * 131.23228 * 6 5 4 16 16 C 1.53002 * 117.49812 * 62.60909 * 6 5 4 17 17 N 1.28469 * 110.23764 * 359.97438 * 4 3 2 18 18 C 1.31847 * 110.06836 * 0.02562 * 17 4 3 19 19 C 1.47582 * 126.52861 * 180.02562 * 18 17 4 20 20 O 1.21488 * 120.00255 * 174.61213 * 19 18 17 21 21 O 1.34732 * 119.99611 * 354.61063 * 19 18 17 22 22 H 1.08999 * 109.47155 * 269.71399 * 1 2 3 23 23 H 1.09006 * 109.46582 * 29.70978 * 1 2 3 24 24 H 1.09000 * 109.47164 * 149.71263 * 1 2 3 25 25 H 1.08005 * 126.37856 * 0.23268 * 3 2 1 26 26 H 1.09005 * 109.46654 * 241.42020 * 5 4 3 27 27 H 1.09000 * 109.47066 * 1.41706 * 5 4 3 28 28 H 0.96998 * 119.99733 * 185.03444 * 10 9 7 29 29 H 1.09004 * 117.49927 * 0.02562 * 15 6 5 30 30 H 1.08995 * 117.49607 * 145.01525 * 15 6 5 31 31 H 1.08991 * 117.49630 * 214.97326 * 16 6 5 32 32 H 1.09003 * 117.49829 * 0.02562 * 16 6 5 33 33 H 0.96706 * 116.99345 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0773 0.0000 4 7 3.5952 0.6152 -0.0059 5 6 4.7937 1.4579 -0.0073 6 6 5.6477 1.1321 1.2197 7 6 5.2404 1.8210 2.4965 8 1 5.3258 1.3033 3.4404 9 6 4.7587 3.1125 2.4597 10 7 5.1223 3.9225 1.4895 11 14 3.5898 3.7115 3.7879 12 1 3.4338 2.6574 4.8222 13 1 4.1394 4.9412 4.4132 14 1 2.2668 4.0122 3.1840 15 6 7.1407 0.8840 0.9954 16 6 6.2127 -0.2854 1.3309 17 7 3.6003 -0.6695 -0.0089 18 6 2.3637 -1.1268 -0.0058 19 6 1.9512 -2.5438 -0.0072 20 8 0.7761 -2.8345 0.0947 21 8 2.8780 -3.5151 -0.1216 22 1 -0.3633 -0.0051 1.0276 23 1 -0.3633 0.8926 -0.5094 24 1 -0.3633 -0.8874 -0.5183 25 1 2.0219 2.1135 0.0035 26 1 5.3705 1.2675 -0.9125 27 1 4.5001 2.5072 0.0224 28 1 4.8427 4.8512 1.5027 29 1 7.5146 0.9532 -0.0261 30 1 7.8287 1.2192 1.7715 31 1 6.2903 -0.7194 2.3277 32 1 5.9764 -0.9858 0.5298 33 1 2.5597 -4.4282 -0.1172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380843950.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:15 Heat of formation + Delta-G solvation = 10.072717 kcal Electronic energy + Delta-G solvation = -18466.941475 eV Core-core repulsion = 15495.409246 eV Total energy + Delta-G solvation = -2971.532229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.13699 -39.53566 -36.84710 -35.81563 -32.86250 -32.44083 -31.27146 -27.56120 -26.52900 -25.68623 -23.18007 -21.21688 -20.59552 -19.90694 -19.23534 -17.61423 -16.86966 -16.50571 -15.79680 -15.15916 -14.87278 -14.64664 -13.85555 -13.30629 -13.16851 -13.03667 -12.74197 -12.49073 -11.92252 -11.85723 -11.54613 -11.31447 -11.07448 -10.95610 -10.60330 -10.47450 -10.37423 -10.10173 -9.77238 -9.36133 -8.87153 -8.62527 -8.29045 -8.19903 -6.39033 -4.25618 1.79039 2.63226 3.00031 3.12084 3.24210 3.31558 3.54249 3.59775 4.20951 4.72332 4.94605 5.27131 5.44205 5.65363 5.78187 5.84415 5.86955 6.03304 6.06177 6.23505 6.28430 6.40058 6.48656 6.63941 6.66419 6.73154 6.85696 6.97796 7.10053 7.29895 7.47709 7.67982 8.12794 8.19331 8.60393 8.65267 9.27285 10.66315 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.021631 B = 0.008250 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.117551 B = 3393.005400 C = 4106.216965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.159 4.159 3 C -0.010 4.010 4 N -0.233 5.233 5 C 0.141 3.859 6 C 0.029 3.971 7 C -0.494 4.494 8 H 0.066 0.934 9 C 0.075 3.925 10 N -0.870 5.870 11 Si 0.880 3.120 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.277 1.277 15 C -0.191 4.191 16 C -0.189 4.189 17 N -0.218 5.218 18 C -0.041 4.041 19 C 0.581 3.419 20 O -0.520 6.520 21 O -0.503 6.503 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.176 0.824 26 H 0.068 0.932 27 H 0.139 0.861 28 H 0.267 0.733 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 -5.498 -4.648 8.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.169 4.169 3 C -0.153 4.153 4 N -0.021 5.021 5 C 0.023 3.977 6 C 0.028 3.972 7 C -0.531 4.531 8 H 0.084 0.916 9 C -0.129 4.129 10 N -0.506 5.506 11 Si 0.706 3.294 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.202 1.202 15 C -0.229 4.229 16 C -0.226 4.226 17 N -0.058 5.058 18 C -0.195 4.195 19 C 0.424 3.576 20 O -0.408 6.408 21 O -0.313 6.313 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.193 0.807 26 H 0.087 0.913 27 H 0.156 0.844 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.854 -5.259 -4.739 8.060 hybrid contribution -1.375 0.192 0.839 1.623 sum -5.230 -5.067 -3.900 8.261 Atomic orbital electron populations 1.20085 0.88699 1.02184 1.02010 1.20129 0.96809 0.90242 1.09713 1.22608 0.84064 1.00284 1.08325 1.45982 1.07780 1.03079 1.45296 1.22171 0.82257 0.94929 0.98343 1.19044 0.90266 0.94139 0.93779 1.20485 1.42584 0.98395 0.91602 0.91626 1.24941 0.95675 0.96201 0.96055 1.69977 1.41935 1.04761 1.33961 0.86720 0.81707 0.78615 0.82336 1.19434 1.20939 1.20232 1.23041 0.96058 1.04162 0.99685 1.22904 1.06566 0.92013 1.01128 1.73618 1.21800 0.94832 1.15554 1.20370 0.90821 0.90836 1.17498 1.19380 0.82536 0.84413 0.71275 1.90837 1.18849 1.83450 1.47628 1.84710 1.41999 1.19410 1.85158 0.91777 0.92167 0.90916 0.80663 0.91349 0.84384 0.92311 0.91527 0.89988 0.90746 0.89659 0.73588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 9.88 36.01 0.36 -0.72 16 2 C -0.16 -2.89 6.25 -104.39 -0.65 -3.54 16 3 C -0.01 -0.18 11.34 -17.17 -0.19 -0.38 16 4 N -0.23 -4.81 3.38 -61.33 -0.21 -5.01 16 5 C 0.14 3.01 6.14 -4.04 -0.02 2.99 16 6 C 0.03 0.68 1.92 -155.66 -0.30 0.38 16 7 C -0.49 -12.80 8.93 -34.44 -0.31 -13.11 16 8 H 0.07 1.77 7.95 -52.49 -0.42 1.35 16 9 C 0.08 1.89 4.88 -17.82 -0.09 1.80 16 10 N -0.87 -21.87 11.52 55.43 0.64 -21.23 16 11 Si 0.88 19.77 29.62 -169.99 -5.04 14.74 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 C -0.19 -4.12 9.88 -26.73 -0.26 -4.39 16 16 C -0.19 -4.10 9.16 -26.73 -0.24 -4.34 16 17 N -0.22 -4.55 10.17 33.41 0.34 -4.21 16 18 C -0.04 -0.80 7.16 -82.79 -0.59 -1.39 16 19 C 0.58 10.14 8.34 34.54 0.29 10.43 16 20 O -0.52 -9.41 15.98 -19.26 -0.31 -9.72 16 21 O -0.50 -7.28 13.44 -40.58 -0.55 -7.83 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.09 6.85 -51.93 -0.36 0.74 16 25 H 0.18 2.88 8.06 -52.48 -0.42 2.46 16 26 H 0.07 1.34 7.92 -51.93 -0.41 0.93 16 27 H 0.14 3.08 5.54 -51.93 -0.29 2.80 16 28 H 0.27 6.35 8.32 -40.82 -0.34 6.02 16 29 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 30 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 31 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.09 1.80 7.24 -51.93 -0.38 1.43 16 33 H 0.41 3.47 9.11 45.56 0.42 3.88 16 LS Contribution 290.93 15.07 4.38 4.38 Total: -1.00 -28.83 290.93 -5.86 -34.68 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.10 Total: 6.48 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.02 Total: -12.27 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.77 Total: -30.46 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.85 Total: -17.55 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.04 Total: 14.74 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.83 -5.86 -34.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380843950.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.755 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds