Wall clock time and date at job start Mon Mar 30 2020 18:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 N 1.46502 * 109.47558 * 119.99938 * 2 1 3 5 5 C 1.38230 * 120.00204 * 154.99898 * 4 2 1 6 6 N 1.32424 * 119.83293 * 354.53440 * 5 4 2 7 7 C 1.31852 * 121.78088 * 179.97438 * 6 5 4 8 8 C 1.38402 * 121.24052 * 359.97438 * 7 6 5 9 9 C 1.38294 * 119.51864 * 0.29717 * 8 7 6 10 10 C 1.40077 * 118.36016 * 359.46387 * 9 8 7 11 11 C 1.47231 * 120.61694 * 180.26341 * 10 9 8 12 12 O 1.21564 * 119.99841 * 185.61750 * 11 10 9 13 13 O 1.34791 * 120.00266 * 5.61624 * 11 10 9 14 14 C 1.34863 * 117.00056 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99945 * 359.97438 * 14 13 11 16 16 C 1.38790 * 119.99982 * 180.02562 * 14 13 11 17 17 N 1.31436 * 120.00168 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00036 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.47330 * 90.00121 * 18 16 14 20 20 H 1.48499 * 109.47047 * 210.00170 * 18 16 14 21 21 H 1.48506 * 109.47089 * 329.99604 * 18 16 14 22 22 H 1.09007 * 109.46813 * 299.99937 * 1 2 3 23 23 H 1.08993 * 109.47324 * 60.00106 * 1 2 3 24 24 H 1.08998 * 109.46480 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47122 * 240.00421 * 2 1 3 26 26 H 1.09002 * 109.46928 * 299.99919 * 3 2 1 27 27 H 1.09000 * 109.47509 * 59.99996 * 3 2 1 28 28 H 1.09000 * 109.47313 * 180.02562 * 3 2 1 29 29 H 0.97006 * 119.99540 * 335.00309 * 4 2 1 30 30 H 1.08007 * 119.37588 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.23487 * 180.02562 * 8 7 6 32 32 H 1.07996 * 120.82039 * 179.69807 * 9 8 7 33 33 H 0.96999 * 119.99895 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1962 5 6 3.2718 -1.2737 1.1943 6 7 3.9838 -1.3013 0.0781 7 6 5.1833 -1.8469 0.0330 8 6 5.7549 -2.4180 1.1567 9 6 5.0548 -2.4233 2.3493 10 6 3.7844 -1.8339 2.3777 11 6 2.9981 -1.8066 3.6222 12 8 1.8580 -1.3851 3.6117 13 8 3.5425 -2.2490 4.7732 14 6 2.7684 -2.1970 5.8764 15 1 1.7610 -1.8129 5.8115 16 6 3.2666 -2.6361 7.0951 17 7 2.5123 -2.5849 8.1703 18 14 5.0091 -3.2997 7.2073 19 1 5.9445 -2.1863 7.5080 20 1 5.0836 -4.3145 8.2889 21 1 5.3845 -3.9262 5.9142 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.4623 -0.7387 1.9895 30 1 5.7300 -1.8483 -0.8985 31 1 6.7387 -2.8601 1.1014 32 1 5.4787 -2.8674 3.2378 33 1 2.8604 -2.8921 9.0219 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381305311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:17 Heat of formation + Delta-G solvation = -60.212942 kcal Electronic energy + Delta-G solvation = -18145.989796 eV Core-core repulsion = 15171.409752 eV Total energy + Delta-G solvation = -2974.580044 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.80131 -40.48135 -38.05558 -37.29557 -34.57634 -33.51785 -33.36360 -30.01808 -28.12677 -27.79469 -25.44436 -23.99959 -22.39625 -21.51505 -20.21495 -18.96713 -18.69049 -17.47255 -17.30055 -16.84707 -16.16634 -15.84527 -15.64728 -15.30507 -14.94911 -14.60875 -14.46409 -13.91051 -13.84899 -13.47331 -13.36003 -13.12161 -12.90740 -12.47887 -12.42530 -12.32132 -11.94886 -11.89036 -11.25799 -11.23022 -10.89263 -10.81180 -10.44081 -8.73455 -8.58848 -6.43630 -0.22656 0.51531 1.31346 1.34272 1.51725 1.72512 2.20601 2.26526 2.40889 2.82934 3.02175 3.59203 3.87613 3.97808 4.09648 4.14147 4.18902 4.36618 4.46333 4.70356 4.72379 4.80791 4.88462 4.98201 5.07165 5.21051 5.28808 5.31924 5.41670 5.65725 5.83160 6.24754 6.31326 6.56557 6.77302 7.20571 7.50984 8.53685 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.006862 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.681552 B = 4079.441257 C = 5031.123249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 C -0.154 4.154 4 N -0.710 5.710 5 C 0.441 3.559 6 N -0.555 5.555 7 C 0.184 3.816 8 C -0.238 4.238 9 C 0.008 3.992 10 C -0.270 4.270 11 C 0.466 3.534 12 O -0.574 6.574 13 O -0.246 6.246 14 C -0.407 4.407 15 H 0.060 0.940 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.980 3.020 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.246 1.246 22 H 0.050 0.950 23 H 0.100 0.900 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.414 0.586 30 H 0.207 0.793 31 H 0.177 0.823 32 H 0.141 0.859 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.342 1.892 -18.301 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 C -0.212 4.212 4 N -0.351 5.351 5 C 0.203 3.797 6 N -0.274 5.274 7 C 0.023 3.977 8 C -0.260 4.260 9 C -0.018 4.018 10 C -0.279 4.279 11 C 0.317 3.683 12 O -0.473 6.473 13 O -0.154 6.154 14 C -0.483 4.483 15 H 0.078 0.922 16 C -0.184 4.184 17 N -0.553 5.553 18 Si 0.799 3.201 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.169 1.169 22 H 0.069 0.931 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.262 0.738 30 H 0.223 0.777 31 H 0.194 0.806 32 H 0.159 0.841 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.494 2.441 -18.894 20.128 hybrid contribution -0.087 -0.457 1.970 2.024 sum 6.408 1.984 -16.925 18.205 Atomic orbital electron populations 1.22055 0.93320 1.02468 1.03538 1.21156 0.94749 0.93043 0.87965 1.22135 1.00909 0.95703 1.02464 1.46011 1.14379 1.56018 1.18709 1.18412 0.86903 0.86812 0.87619 1.67501 1.10203 1.25160 1.24497 1.23510 0.88266 0.86170 0.99735 1.22132 1.03961 1.07710 0.92243 1.21883 0.90099 0.89841 1.00000 1.19439 0.99873 1.17801 0.90769 1.21223 0.85406 0.77118 0.84510 1.90274 1.21406 1.49805 1.85767 1.83545 1.44204 1.71472 1.16209 1.20369 0.97588 1.45572 0.84788 0.92204 1.25583 1.04837 0.95551 0.92393 1.69692 1.39529 1.45529 1.00501 0.85124 0.76218 0.79085 0.79636 1.18354 1.18797 1.16928 0.93052 0.88143 0.92794 0.88958 0.89074 0.93886 0.93614 0.73791 0.77652 0.80585 0.84124 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.38 71.98 0.68 -2.86 16 2 C 0.13 3.60 3.24 44.99 0.15 3.74 16 3 C -0.15 -3.68 9.50 71.98 0.68 -3.00 16 4 N -0.71 -25.41 5.09 -323.88 -1.65 -27.05 16 5 C 0.44 15.96 7.46 133.68 1.00 16.96 16 6 N -0.55 -16.11 9.14 -192.44 -1.76 -17.87 16 7 C 0.18 3.91 11.16 84.73 0.95 4.85 16 8 C -0.24 -5.27 10.08 22.32 0.23 -5.04 16 9 C 0.01 0.24 9.73 22.73 0.22 0.46 16 10 C -0.27 -10.86 5.91 -19.89 -0.12 -10.98 16 11 C 0.47 23.87 7.82 70.19 0.55 24.41 16 12 O -0.57 -31.80 12.92 19.63 0.25 -31.54 16 13 O -0.25 -13.57 7.91 10.65 0.08 -13.48 16 14 C -0.41 -25.45 10.11 67.95 0.69 -24.76 16 15 H 0.06 4.22 7.09 -2.91 -0.02 4.20 16 16 C 0.02 0.98 5.50 84.88 0.47 1.44 16 17 N -0.91 -55.39 13.96 21.63 0.30 -55.09 16 18 Si 0.98 43.39 28.62 68.60 1.96 45.35 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 22 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.09 2.36 7.45 -2.39 -0.02 2.35 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.41 17.17 5.11 -94.27 -0.48 16.69 16 30 H 0.21 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.14 4.47 7.71 -2.91 -0.02 4.44 16 33 H 0.29 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -74.31 289.47 5.32 -68.99 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.64 Total: 25.46 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.48 Total: 5.23 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -3.10 Total: -100.01 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: 0.34 Total: -45.03 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.96 Total: 45.35 kcal Total: -74.31 5.32 -68.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381305311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.780 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds