Wall clock time and date at job start Mon Mar 30 2020 18:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33694 * 126.27687 * 2 1 4 4 C 1.30616 * 108.99443 * 180.02562 * 3 2 1 5 5 O 1.33668 * 109.15663 * 359.97438 * 4 3 2 6 6 C 1.35339 * 107.68211 * 0.02562 * 5 4 3 7 7 C 1.46725 * 126.64019 * 180.02562 * 6 5 4 8 8 O 1.21680 * 119.99917 * 175.15130 * 7 6 5 9 9 N 1.34776 * 120.00077 * 355.14229 * 7 6 5 10 10 C 1.46502 * 119.99952 * 185.57057 * 9 7 6 11 11 C 1.53001 * 109.46821 * 185.19762 * 10 9 7 12 12 C 1.50691 * 115.55033 * 57.84436 * 11 10 9 13 13 H 1.07998 * 120.00327 * 264.63079 * 12 11 10 14 14 C 1.37882 * 119.99936 * 84.63524 * 12 11 10 15 15 N 1.31511 * 120.00173 * 1.96825 * 14 12 11 16 16 Si 1.86801 * 119.99907 * 181.96676 * 14 12 11 17 17 H 1.48500 * 109.47090 * 60.00042 * 16 14 12 18 18 H 1.48501 * 109.47320 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47400 * 300.00278 * 16 14 12 20 20 C 1.53005 * 117.49770 * 272.17046 * 11 10 9 21 21 C 1.53002 * 117.49398 * 203.51321 * 11 10 9 22 22 H 1.08999 * 109.47221 * 89.97258 * 1 2 3 23 23 H 1.08995 * 109.47496 * 209.97360 * 1 2 3 24 24 H 1.08998 * 109.46949 * 329.97723 * 1 2 3 25 25 H 1.08002 * 125.42054 * 179.97438 * 4 3 2 26 26 H 0.97002 * 120.00161 * 5.56976 * 9 7 6 27 27 H 1.08996 * 109.47261 * 305.19967 * 10 9 7 28 28 H 1.08999 * 109.46895 * 65.19807 * 10 9 7 29 29 H 0.96996 * 120.00094 * 185.01075 * 15 14 12 30 30 H 1.08999 * 117.50080 * 0.02562 * 20 11 10 31 31 H 1.09000 * 117.49530 * 145.02256 * 20 11 10 32 32 H 1.09005 * 117.49510 * 214.97834 * 21 11 10 33 33 H 1.09004 * 117.50338 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0006 5 8 3.5890 -0.6462 -0.0004 6 6 2.3136 -1.0992 -0.0002 7 6 1.8826 -2.5017 0.0005 8 8 0.7002 -2.7748 0.0896 9 7 2.7963 -3.4876 -0.0977 10 6 2.3603 -4.8809 -0.2199 11 6 3.5813 -5.8023 -0.1839 12 6 4.4438 -5.6906 1.0467 13 1 5.3157 -5.0534 1.0390 14 6 4.1199 -6.4020 2.1825 15 7 3.0805 -7.2077 2.1797 16 14 5.1574 -6.2213 3.7253 17 1 5.1386 -4.8051 4.1715 18 1 4.6033 -7.0853 4.7985 19 1 6.5549 -6.6295 3.4327 20 6 4.2801 -6.1011 -1.5118 21 6 3.4427 -7.1839 -0.8266 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3633 0.8898 0.5142 25 1 4.4044 1.3442 -0.0011 26 1 3.7426 -3.2747 -0.0874 27 1 1.6947 -5.1272 0.6073 28 1 1.8318 -5.0147 -1.1637 29 1 2.8092 -7.6522 2.9980 30 1 3.8704 -5.6410 -2.4110 31 1 5.3638 -6.2172 -1.4952 32 1 3.9759 -8.0120 -0.3594 33 1 2.4817 -7.4366 -1.2746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404249592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:23 Heat of formation + Delta-G solvation = 4.793793 kcal Electronic energy + Delta-G solvation = -18055.353679 eV Core-core repulsion = 15083.592539 eV Total energy + Delta-G solvation = -2971.761140 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.35297 -39.04038 -36.77809 -35.30981 -33.40387 -32.02072 -31.51505 -28.17935 -26.25545 -25.28477 -23.39793 -21.56862 -21.19304 -20.15734 -19.47410 -17.86863 -16.79733 -16.47732 -16.11055 -15.20272 -14.75405 -14.50306 -14.37267 -13.99073 -13.27605 -13.15626 -12.88344 -12.76891 -12.12486 -11.97785 -11.64451 -11.07750 -11.01090 -10.98003 -10.83368 -10.59264 -10.30545 -9.87340 -9.52681 -9.13396 -8.91360 -8.53889 -8.41154 -8.13489 -6.12912 -4.22516 0.97213 2.47833 2.60265 3.24410 3.30471 3.31794 3.43488 3.69264 4.07897 4.32163 4.80363 5.00759 5.16258 5.27711 5.54714 5.58731 5.72157 5.90011 5.95543 6.00205 6.24746 6.36218 6.39185 6.43168 6.64179 6.74487 7.05145 7.07921 7.31350 7.44814 7.55683 7.76020 8.07864 8.26816 8.56462 8.78829 9.45384 10.95196 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022827 B = 0.006359 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.316612 B = 4402.385245 C = 4803.581989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.063 3.937 3 N -0.496 5.496 4 C 0.189 3.811 5 O -0.187 6.187 6 C -0.097 4.097 7 C 0.594 3.406 8 O -0.528 6.528 9 N -0.683 5.683 10 C 0.161 3.839 11 C 0.022 3.978 12 C -0.502 4.502 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.874 5.874 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.212 4.212 21 C -0.142 4.142 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.253 0.747 26 H 0.406 0.594 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.263 0.737 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 11.244 -4.681 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 N -0.225 5.225 4 C -0.036 4.036 5 O -0.073 6.073 6 C -0.152 4.152 7 C 0.378 3.622 8 O -0.408 6.408 9 N -0.331 5.331 10 C 0.038 3.962 11 C 0.022 3.978 12 C -0.539 4.539 13 H 0.078 0.922 14 C -0.129 4.129 15 N -0.510 5.510 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.249 4.249 21 C -0.180 4.180 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.092 0.908 25 H 0.269 0.731 26 H 0.241 0.759 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.683 11.382 -4.531 12.270 hybrid contribution 1.449 -0.369 0.947 1.770 sum 0.766 11.013 -3.584 11.607 Atomic orbital electron populations 1.20368 0.85478 1.04359 1.03447 1.22004 0.98331 0.86384 0.99330 1.70295 1.01378 1.31626 1.19239 1.28229 0.97516 0.79704 0.98164 1.84532 1.29867 1.24182 1.68675 1.23308 0.81103 0.96859 1.13950 1.16388 0.86121 0.81257 0.78427 1.90812 1.16230 1.81701 1.52068 1.45900 1.09714 1.07299 1.70151 1.21106 0.97496 0.77868 0.99698 1.19028 0.93906 0.93845 0.91057 1.20297 1.10570 1.27407 0.95630 0.92242 1.24974 0.95309 0.93951 0.98711 1.69967 1.25599 1.27854 1.27560 0.86704 0.80629 0.78161 0.82803 1.20226 1.21181 1.20141 1.23063 0.98323 1.06862 0.96647 1.22476 0.98794 0.93896 1.02805 0.90358 0.88379 0.90813 0.73084 0.75877 0.90457 0.94049 0.92725 0.91618 0.90294 0.89505 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.93 36.01 0.36 -0.71 16 2 C 0.06 0.98 7.16 -82.46 -0.59 0.39 16 3 N -0.50 -7.01 11.26 -10.88 -0.12 -7.14 16 4 C 0.19 2.16 13.21 52.25 0.69 2.85 16 5 O -0.19 -2.71 10.58 4.43 0.05 -2.66 16 6 C -0.10 -1.62 7.18 -36.84 -0.26 -1.88 16 7 C 0.59 11.47 7.78 -12.83 -0.10 11.37 16 8 O -0.53 -11.22 14.75 5.21 0.08 -11.14 16 9 N -0.68 -13.49 5.37 -61.61 -0.33 -13.82 16 10 C 0.16 3.53 5.57 -4.04 -0.02 3.51 16 11 C 0.02 0.52 1.51 -155.66 -0.23 0.28 16 12 C -0.50 -12.75 8.38 -34.44 -0.29 -13.04 16 13 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 15 N -0.87 -23.96 12.73 55.43 0.71 -23.26 16 16 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C -0.21 -4.31 9.94 -26.69 -0.27 -4.57 16 21 C -0.14 -3.16 9.26 -26.69 -0.25 -3.41 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.10 1.46 6.38 -51.93 -0.33 1.13 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.25 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.41 7.61 8.05 -40.82 -0.33 7.28 16 27 H 0.08 1.93 8.09 -51.93 -0.42 1.51 16 28 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 29 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 32 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 294.54 15.07 4.44 4.44 Total: -1.00 -29.69 294.54 -5.27 -34.97 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.01 Total: 6.48 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.06 Total: -3.34 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.25 Total: -44.22 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.12 Total: -13.81 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.69 -5.27 -34.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404249592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.762 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds