Wall clock time and date at job start Mon Mar 30 2020 18:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35317 * 126.66400 * 2 1 4 4 C 1.42270 * 103.92026 * 180.12843 * 3 2 1 5 5 C 1.48334 * 126.94007 * 179.91010 * 4 3 2 6 6 O 1.21499 * 119.99622 * 4.75388 * 5 4 3 7 7 N 1.34774 * 120.00168 * 184.75228 * 5 4 3 8 8 C 1.46499 * 119.99843 * 185.01899 * 7 5 4 9 9 C 1.52996 * 109.47203 * 175.18638 * 8 7 5 10 10 C 1.50697 * 115.55050 * 65.21103 * 9 8 7 11 11 H 1.08001 * 120.00587 * 264.81488 * 10 9 8 12 12 C 1.37877 * 119.99903 * 84.81809 * 10 9 8 13 13 N 1.31518 * 120.00250 * 184.67251 * 12 10 9 14 14 Si 1.86805 * 120.00173 * 4.67254 * 12 10 9 15 15 H 1.48497 * 109.46774 * 94.52899 * 14 12 10 16 16 H 1.48499 * 109.47178 * 214.53101 * 14 12 10 17 17 H 1.48501 * 109.46771 * 334.52972 * 14 12 10 18 18 C 1.52997 * 117.49786 * 279.54545 * 9 8 7 19 19 C 1.52998 * 117.50115 * 210.88469 * 9 8 7 20 20 N 1.30985 * 106.12636 * 359.64165 * 4 3 2 21 21 O 1.20907 * 111.43405 * 0.22917 * 20 4 3 22 22 H 1.09000 * 109.46868 * 180.29003 * 1 2 3 23 23 H 1.08989 * 109.47695 * 300.29105 * 1 2 3 24 24 H 1.09000 * 109.46992 * 60.29645 * 1 2 3 25 25 H 1.07997 * 128.03727 * 359.97438 * 3 2 1 26 26 H 0.96995 * 119.99724 * 5.29205 * 7 5 4 27 27 H 1.09002 * 109.47025 * 295.18334 * 8 7 5 28 28 H 1.09000 * 109.47359 * 55.18698 * 8 7 5 29 29 H 0.96994 * 120.00400 * 179.97438 * 13 12 10 30 30 H 1.08994 * 117.50136 * 359.97438 * 18 9 8 31 31 H 1.09004 * 117.50216 * 145.01578 * 18 9 8 32 32 H 1.09001 * 117.50161 * 214.98083 * 19 9 8 33 33 H 1.09002 * 117.49922 * 359.97426 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 -0.0031 5 6 4.9076 1.2842 -0.0063 6 8 4.9028 2.4960 0.0808 7 7 6.0762 0.6202 -0.1057 8 6 7.3433 1.3476 0.0016 9 6 8.5059 0.3535 -0.0245 10 6 8.6812 -0.4079 -1.3132 11 1 8.2458 -1.3900 -1.4238 12 6 9.3976 0.1493 -2.3511 13 7 9.4735 -0.4737 -3.5068 14 14 10.2605 1.7894 -2.1158 15 1 11.6731 1.5535 -1.7233 16 1 10.2213 2.5562 -3.3869 17 1 9.5730 2.5620 -1.0502 18 6 8.8412 -0.3758 1.2780 19 6 9.7694 0.7233 0.7550 20 7 3.4762 -0.7657 0.0033 21 8 2.3073 -1.0749 0.0051 22 1 -0.3633 -1.0277 0.0052 23 1 -0.3634 0.5183 0.8872 24 1 -0.3633 0.5092 -0.8926 25 1 2.0301 2.1271 -0.0004 26 1 6.0783 -0.3386 -0.2522 27 1 7.4375 2.0389 -0.8359 28 1 7.3637 1.9059 0.9376 29 1 9.9772 -0.0816 -4.2371 30 1 8.2339 -0.1470 2.1536 31 1 9.1890 -1.4061 1.2029 32 1 10.7275 0.4157 0.3359 33 1 9.7726 1.6751 1.2861 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404269641.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:26 Heat of formation + Delta-G solvation = 47.786212 kcal Electronic energy + Delta-G solvation = -17835.279988 eV Core-core repulsion = 14865.383139 eV Total energy + Delta-G solvation = -2969.896849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.04082 -39.21146 -37.09369 -34.11701 -33.80439 -33.05977 -32.15264 -27.97187 -27.21163 -25.53706 -23.76151 -22.52160 -21.74742 -19.74654 -19.14049 -17.80821 -17.55368 -16.70782 -16.28548 -15.24123 -15.09003 -14.53693 -14.25063 -13.85481 -13.73474 -13.51733 -13.11702 -12.82885 -12.58789 -12.48218 -12.14593 -11.43824 -11.16621 -10.89147 -10.55556 -10.37333 -10.25371 -9.98053 -9.56896 -9.46566 -9.23761 -8.75071 -8.54821 -8.42017 -6.17321 -4.22402 1.21913 1.70420 2.92616 3.26234 3.35279 3.37804 3.43950 3.46523 4.12410 4.38410 4.52951 4.86444 4.94355 5.07406 5.10993 5.13296 5.30999 5.46632 5.59602 5.65096 5.88994 5.97563 6.04268 6.17079 6.40372 6.43480 6.66948 6.89622 6.98581 7.05054 7.65064 7.88828 8.15133 8.39463 8.51650 8.83608 9.45376 10.93844 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.031409 B = 0.005392 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.251790 B = 5191.993124 C = 5290.325980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.043 4.043 3 C -0.186 4.186 4 C -0.018 4.018 5 C 0.587 3.413 6 O -0.540 6.540 7 N -0.682 5.682 8 C 0.156 3.844 9 C -0.017 4.017 10 C -0.494 4.494 11 H 0.079 0.921 12 C 0.081 3.919 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.278 1.278 16 H -0.293 1.293 17 H -0.255 1.255 18 C -0.178 4.178 19 C -0.189 4.189 20 N -0.327 5.327 21 O 0.120 5.880 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.179 0.821 26 H 0.412 0.588 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.266 0.734 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.093 1.465 7.797 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.177 4.177 5 C 0.370 3.630 6 O -0.417 6.417 7 N -0.332 5.332 8 C 0.033 3.967 9 C -0.019 4.019 10 C -0.531 4.531 11 H 0.097 0.903 12 C -0.123 4.123 13 N -0.529 5.529 14 Si 0.705 3.295 15 H -0.205 1.205 16 H -0.219 1.219 17 H -0.178 1.178 18 C -0.215 4.215 19 C -0.227 4.227 20 N -0.028 5.028 21 O 0.044 5.956 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.196 0.804 26 H 0.248 0.752 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.053 1.339 7.682 16.072 hybrid contribution 0.319 1.159 -0.163 1.213 sum -13.734 2.497 7.519 15.855 Atomic orbital electron populations 1.20331 0.83611 1.04736 1.04186 1.24469 0.96484 0.85694 1.03949 1.22409 0.89871 1.01435 1.07082 1.23671 0.97066 0.90018 1.06954 1.16919 0.81746 0.86310 0.78008 1.90752 1.86795 1.12671 1.51505 1.45796 1.04905 1.12969 1.69489 1.21250 0.81492 0.93972 1.00024 1.19605 0.91862 0.97279 0.93123 1.20198 1.34821 1.03596 0.94453 0.90337 1.24979 0.95536 0.97165 0.94587 1.69896 1.40959 1.39376 1.02677 0.86864 0.80388 0.84499 0.77775 1.20450 1.21950 1.17844 1.22857 1.03903 0.97171 0.97597 1.22960 0.96088 0.98339 1.05292 1.74233 0.96834 1.15744 1.16008 1.84794 1.11225 1.33433 1.66119 0.89753 0.89124 0.89073 0.80389 0.75172 0.91505 0.93132 0.92447 0.90887 0.89308 0.89159 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.45 36.01 0.38 -0.01 16 2 C -0.04 -0.46 7.47 -35.35 -0.26 -0.72 16 3 C -0.19 -2.42 10.93 -39.07 -0.43 -2.85 16 4 C -0.02 -0.30 7.18 -82.53 -0.59 -0.89 16 5 C 0.59 11.64 7.84 -12.11 -0.09 11.55 16 6 O -0.54 -11.81 16.96 5.37 0.09 -11.72 16 7 N -0.68 -13.97 5.48 -61.09 -0.33 -14.30 16 8 C 0.16 3.38 5.12 -4.04 -0.02 3.36 16 9 C -0.02 -0.39 0.82 -155.67 -0.13 -0.52 16 10 C -0.49 -13.25 9.18 -34.44 -0.32 -13.56 16 11 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 12 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 13 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 14 Si 0.88 21.41 24.95 -169.99 -4.24 17.17 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.25 -5.90 5.69 56.52 0.32 -5.57 16 18 C -0.18 -3.51 9.96 -26.70 -0.27 -3.77 16 19 C -0.19 -3.90 7.31 -26.69 -0.20 -4.10 16 20 N -0.33 -5.34 11.87 33.29 0.40 -4.95 16 21 O 0.12 1.60 11.18 17.26 0.19 1.79 16 22 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.09 0.36 8.14 -51.94 -0.42 -0.07 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16 26 H 0.41 8.36 8.11 -40.82 -0.33 8.03 16 27 H 0.07 1.57 7.06 -51.93 -0.37 1.20 16 28 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.09 1.93 7.13 -51.93 -0.37 1.56 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 289.69 15.07 4.37 4.37 Total: -1.00 -31.73 289.69 -4.87 -36.59 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.09 Total: 6.33 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -2.03 Total: -9.36 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.83 Total: -45.18 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.28 Total: -9.92 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.24 Total: 17.17 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.73 -4.87 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404269641.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.379 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds