Wall clock time and date at job start Mon Mar 30 2020 18:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47418 * 2 1 4 4 C 1.38015 * 119.51842 * 124.99319 * 3 2 1 5 5 C 1.39926 * 119.13775 * 179.97438 * 4 3 2 6 6 C 1.48160 * 120.89238 * 180.02562 * 5 4 3 7 7 O 1.21506 * 120.00328 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99737 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99913 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46804 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00528 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99597 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00137 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99726 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46706 * 60.00423 * 14 12 10 16 16 H 1.48500 * 109.46819 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47368 * 300.00227 * 14 12 10 18 18 C 1.39616 * 118.21170 * 0.02562 * 5 4 3 19 19 C 1.38849 * 118.95108 * 0.27314 * 18 5 4 20 20 O 1.35682 * 119.62260 * 179.70057 * 19 18 5 21 21 N 1.31883 * 119.50794 * 305.02143 * 3 2 1 22 22 H 1.09000 * 109.47394 * 300.00855 * 1 2 3 23 23 H 1.08999 * 109.46966 * 60.00275 * 1 2 3 24 24 H 1.09001 * 109.47259 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47394 * 239.99145 * 2 1 3 26 26 H 1.09000 * 109.46523 * 119.99429 * 2 1 3 27 27 H 1.08008 * 120.43051 * 359.97438 * 4 3 2 28 28 H 0.97004 * 119.99562 * 359.97438 * 8 6 5 29 29 H 1.08995 * 109.47332 * 299.99415 * 9 8 6 30 30 H 1.09001 * 109.46802 * 60.00099 * 9 8 6 31 31 H 0.96997 * 119.99835 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.52082 * 179.97438 * 18 5 4 33 33 H 0.96698 * 114.00037 * 90.00240 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9084 1.8323 0.9839 5 6 3.3703 3.1531 0.9760 6 6 4.3118 3.6359 2.0130 7 8 4.6929 2.8818 2.8862 8 7 4.7457 4.9118 1.9878 9 6 5.6771 5.3891 3.0129 10 6 6.0034 6.8384 2.7594 11 1 5.5616 7.3523 1.9186 12 6 6.8661 7.5081 3.6010 13 7 7.4045 6.8821 4.6246 14 14 7.2712 9.3044 3.2863 15 1 6.0241 10.1091 3.3364 16 1 8.2153 9.7882 4.3254 17 1 7.8967 9.4435 1.9466 18 6 2.9200 4.0037 -0.0355 19 6 2.0335 3.5104 -0.9834 20 8 1.5825 4.3268 -1.9688 21 7 1.6279 2.2528 -0.9399 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5140 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.2333 1.1437 1.7500 28 1 4.4417 5.5137 1.2905 29 1 5.2188 5.2863 3.9965 30 1 6.5927 4.7988 2.9751 31 1 8.0117 7.3532 5.2164 32 1 3.2523 5.0305 -0.0770 33 1 2.1314 4.3229 -2.7649 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427632622.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:32 Heat of formation + Delta-G solvation = -55.652187 kcal Electronic energy + Delta-G solvation = -17360.925014 eV Core-core repulsion = 14386.542740 eV Total energy + Delta-G solvation = -2974.382275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76967 -38.75913 -37.33408 -34.43299 -34.01634 -32.54731 -32.03002 -29.51276 -27.50456 -25.07895 -23.91190 -22.63937 -21.88418 -19.89371 -18.82833 -17.29811 -16.86373 -16.19900 -15.63464 -15.33300 -15.04501 -14.73424 -14.42225 -14.27635 -14.14483 -13.34282 -12.95089 -12.39369 -12.17403 -11.98335 -11.96295 -11.87676 -11.56531 -11.20335 -11.06370 -10.92999 -10.40310 -9.85326 -9.83180 -9.50772 -9.25047 -8.90463 -8.82196 -8.05022 -6.23112 -4.30999 0.74550 0.88811 3.06752 3.21937 3.26859 3.28140 3.44710 3.74924 3.87886 4.28940 4.33779 4.80315 4.87801 4.97983 5.10233 5.13245 5.16884 5.22477 5.41075 5.59912 5.70708 5.75846 5.92099 6.08436 6.12833 6.36078 7.17009 7.22098 7.33802 7.40046 7.55470 7.78192 7.87451 8.42588 8.63927 8.87447 9.35504 10.86972 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.004463 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.514656 B = 6272.677418 C = 6985.089289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C 0.146 3.854 4 C -0.128 4.128 5 C -0.056 4.056 6 C 0.538 3.462 7 O -0.541 6.541 8 N -0.698 5.698 9 C 0.248 3.752 10 C -0.548 4.548 11 H 0.063 0.937 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.905 3.095 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.162 4.162 19 C 0.309 3.691 20 O -0.480 6.480 21 N -0.492 5.492 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.151 0.849 28 H 0.392 0.608 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.268 0.732 32 H 0.147 0.853 33 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 -9.108 -11.773 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.009 3.991 4 C -0.148 4.148 5 C -0.067 4.067 6 C 0.322 3.678 7 O -0.420 6.420 8 N -0.346 5.346 9 C 0.128 3.872 10 C -0.586 4.586 11 H 0.082 0.918 12 C -0.139 4.139 13 N -0.521 5.521 14 Si 0.732 3.268 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.184 4.184 19 C 0.130 3.870 20 O -0.287 6.287 21 N -0.212 5.212 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.169 0.831 28 H 0.226 0.774 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -10.845 -9.673 -11.208 18.352 hybrid contribution 1.058 1.685 -0.214 2.001 sum -9.787 -7.989 -11.422 17.031 Atomic orbital electron populations 1.21682 0.94033 1.01711 1.02780 1.20515 0.97083 0.89862 1.03513 1.20951 0.92950 0.95674 0.89546 1.22152 0.97305 0.95836 0.99551 1.20649 0.96716 0.94280 0.95068 1.18111 0.81564 0.83387 0.84769 1.90745 1.58391 1.55591 1.37279 1.46469 1.46488 1.09990 1.31652 1.19223 0.87560 0.94324 0.86087 1.21156 1.28964 0.95188 1.13283 0.91848 1.24945 0.95333 0.98939 0.94657 1.69958 1.30027 1.37083 1.15076 0.86447 0.78386 0.83862 0.78079 1.19980 1.20998 1.20006 1.22364 0.97932 1.01844 0.96264 1.18920 0.91172 0.86498 0.90418 1.84805 1.55022 1.61393 1.27448 1.66727 1.24724 1.03648 1.26087 0.92778 0.91609 0.92259 0.89795 0.89786 0.83142 0.77433 0.95063 0.95066 0.92265 0.83547 0.74293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.77 37.16 0.36 -0.93 16 2 C -0.07 -0.67 6.33 -27.88 -0.18 -0.85 16 3 C 0.15 1.86 6.18 -82.65 -0.51 1.35 16 4 C -0.13 -1.82 9.27 -39.03 -0.36 -2.18 16 5 C -0.06 -0.90 5.91 -104.68 -0.62 -1.51 16 6 C 0.54 10.84 7.80 -12.18 -0.10 10.74 16 7 O -0.54 -12.78 16.44 5.36 0.09 -12.69 16 8 N -0.70 -14.54 5.51 -62.33 -0.34 -14.88 16 9 C 0.25 6.44 5.43 -5.19 -0.03 6.42 16 10 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.88 -25.60 13.29 55.43 0.74 -24.87 16 14 Si 0.91 20.50 29.54 -169.99 -5.02 15.47 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 18 C -0.16 -2.24 9.55 -38.84 -0.37 -2.61 16 19 C 0.31 4.10 7.74 -17.16 -0.13 3.96 16 20 O -0.48 -5.36 13.56 -18.75 -0.25 -5.62 16 21 N -0.49 -6.69 9.87 -9.60 -0.09 -6.79 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.66 7.86 -51.93 -0.41 0.26 16 27 H 0.15 2.05 7.62 -52.48 -0.40 1.65 16 28 H 0.39 6.97 6.46 -40.82 -0.26 6.71 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.15 1.79 6.53 -52.49 -0.34 1.44 16 33 H 0.40 2.40 9.06 45.56 0.41 2.81 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -32.75 294.31 -5.86 -38.61 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.06 Total: 5.13 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.35 Total: 1.19 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.30 Total: -46.53 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.17 Total: -18.31 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.75 -5.86 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632622.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.039 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds