Wall clock time and date at job start Mon Mar 30 2020 18:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34257 * 126.52430 * 2 1 4 4 C 1.34049 * 108.22362 * 180.23135 * 3 2 1 5 5 N 1.29935 * 109.24600 * 359.76981 * 4 3 2 6 6 C 1.36063 * 108.47439 * 0.02562 * 5 4 3 7 7 C 1.47424 * 126.44841 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00038 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99874 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 187.13201 * 14 12 11 17 17 H 1.48503 * 109.46796 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47212 * 300.00012 * 16 14 12 19 19 H 1.48498 * 109.47212 * 60.00416 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 H 1.09001 * 109.47270 * 270.15858 * 1 2 3 23 23 H 1.09002 * 109.47217 * 30.15598 * 1 2 3 24 24 H 1.08992 * 109.47310 * 150.15838 * 1 2 3 25 25 H 1.08001 * 125.38002 * 179.73891 * 4 3 2 26 26 H 0.97003 * 119.99966 * 359.97438 * 9 7 6 27 27 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 28 28 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 29 29 H 0.97004 * 120.00131 * 355.39941 * 15 14 12 30 30 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 31 31 H 1.08997 * 117.50012 * 0.02562 * 20 11 10 32 32 H 1.09003 * 117.50343 * 359.97438 * 21 11 10 33 33 H 1.08997 * 117.49643 * 144.97660 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6580 -0.0051 5 7 3.6002 -0.6412 -0.0034 6 6 2.3170 -1.0936 0.0024 7 6 1.8853 -2.5032 0.0056 8 8 0.7002 -2.7762 0.0104 9 7 2.8040 -3.4893 0.0033 10 6 2.3750 -4.8901 0.0059 11 6 3.6007 -5.7987 0.1198 12 6 4.5891 -5.7019 -1.0137 13 1 5.4483 -5.0533 -0.9271 14 6 4.3965 -6.4416 -2.1612 15 7 3.2831 -7.1218 -2.3260 16 14 5.7172 -6.4774 -3.4819 17 1 5.2696 -7.3382 -4.6062 18 1 5.9571 -5.0990 -3.9795 19 1 6.9743 -7.0232 -2.9101 20 6 4.1561 -6.0634 1.5207 21 6 3.4064 -7.1686 0.7727 22 1 -0.3634 0.0028 1.0277 23 1 -0.3634 0.8886 -0.5163 24 1 -0.3633 -0.8913 -0.5113 25 1 4.4489 1.2977 -0.0104 26 1 3.7492 -3.2715 -0.0009 27 1 1.8449 -5.1095 -0.9209 28 1 1.7126 -5.0656 0.8535 29 1 2.6264 -7.1575 -1.6129 30 1 5.2363 -6.1676 1.6224 31 1 3.6480 -5.5907 2.3612 32 1 2.4054 -7.4225 1.1215 33 1 3.9931 -8.0000 0.3821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431129324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:36 Heat of formation + Delta-G solvation = -1.095976 kcal Electronic energy + Delta-G solvation = -18031.538100 eV Core-core repulsion = 15059.521560 eV Total energy + Delta-G solvation = -2972.016540 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.38671 -39.01495 -36.96738 -34.78497 -33.40497 -32.31948 -31.90404 -27.86653 -26.15690 -24.85976 -23.40282 -21.76373 -21.31460 -20.03450 -19.61039 -17.92922 -16.86896 -16.63509 -15.90494 -15.39272 -14.63332 -14.55312 -14.04102 -13.75006 -13.63889 -13.15571 -12.93284 -12.73273 -12.43634 -12.35882 -11.80419 -11.24782 -10.94539 -10.80162 -10.71215 -10.48627 -10.12876 -9.84027 -9.55186 -8.92236 -8.68537 -8.48085 -8.39725 -8.18936 -6.38623 -4.14065 1.18121 2.17707 2.57622 3.42579 3.43174 3.61915 3.62657 3.69507 4.15537 4.48883 4.67712 4.97806 5.14280 5.23214 5.30751 5.42478 5.46107 5.82577 5.83722 6.01511 6.13269 6.16987 6.23965 6.36907 6.54578 6.64545 6.85263 7.09836 7.18263 7.24126 7.50091 8.18235 8.22402 8.36473 8.72172 8.83023 9.61759 11.00791 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.006128 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.384197 B = 4567.914905 C = 5007.490216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.032 3.968 3 O -0.205 6.205 4 C 0.166 3.834 5 N -0.457 5.457 6 C -0.066 4.066 7 C 0.589 3.411 8 O -0.553 6.553 9 N -0.679 5.679 10 C 0.157 3.843 11 C 0.004 3.996 12 C -0.576 4.576 13 H 0.054 0.946 14 C 0.030 3.970 15 N -0.900 5.900 16 Si 1.066 2.934 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.193 4.193 21 C -0.171 4.171 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.254 0.746 26 H 0.412 0.588 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.275 0.725 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 13.890 5.013 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.025 4.025 3 O -0.091 6.091 4 C -0.062 4.062 5 N -0.186 5.186 6 C -0.186 4.186 7 C 0.373 3.627 8 O -0.434 6.434 9 N -0.326 5.326 10 C 0.034 3.966 11 C 0.003 3.997 12 C -0.614 4.614 13 H 0.072 0.928 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.894 3.106 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.230 4.230 21 C -0.209 4.209 22 H 0.107 0.893 23 H 0.096 0.904 24 H 0.131 0.869 25 H 0.269 0.731 26 H 0.248 0.752 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.414 12.692 3.487 13.239 hybrid contribution -0.130 1.179 1.573 1.970 sum -1.545 13.872 5.060 14.846 Atomic orbital electron populations 1.20560 0.82691 1.05290 1.04451 1.23716 0.95150 0.83355 1.00237 1.84340 1.18620 1.36366 1.69807 1.27989 0.85208 0.91352 1.01657 1.70793 1.22001 1.09975 1.15801 1.21705 0.88586 0.96045 1.12291 1.16754 0.85749 0.82555 0.77625 1.90727 1.16398 1.83309 1.52930 1.45732 1.10271 1.06103 1.70509 1.21108 0.96505 0.78821 1.00150 1.19318 0.94879 0.93416 0.92079 1.21199 1.09269 1.29760 1.01129 0.92769 1.25774 0.99504 0.93251 0.99167 1.70741 1.07232 1.40486 1.34978 0.83581 0.74757 0.76411 0.75807 1.20794 1.21454 1.21396 1.22900 0.99098 1.05051 0.95986 1.22752 0.99369 0.93739 1.05050 0.89265 0.90421 0.86856 0.73077 0.75215 0.91568 0.93813 0.91335 0.89976 0.91397 0.91251 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 9.88 36.01 0.36 -0.48 16 2 C 0.03 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.20 -2.52 10.73 6.51 0.07 -2.45 16 4 C 0.17 1.90 13.19 51.96 0.69 2.58 16 5 N -0.46 -7.26 11.06 -11.48 -0.13 -7.39 16 6 C -0.07 -1.15 6.99 -83.02 -0.58 -1.73 16 7 C 0.59 11.97 7.81 -12.52 -0.10 11.87 16 8 O -0.55 -11.98 14.80 5.27 0.08 -11.90 16 9 N -0.68 -14.52 5.45 -61.38 -0.33 -14.86 16 10 C 0.16 3.64 5.43 -4.04 -0.02 3.62 16 11 C 0.00 0.09 0.99 -155.66 -0.15 -0.06 16 12 C -0.58 -15.39 8.44 -34.44 -0.29 -15.69 16 13 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 14 C 0.03 0.81 5.39 -17.82 -0.10 0.72 16 15 N -0.90 -26.22 13.57 55.43 0.75 -25.47 16 16 Si 1.07 24.69 29.91 -169.99 -5.08 19.60 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.19 -4.11 9.96 -26.69 -0.27 -4.38 16 21 C -0.17 -3.86 8.74 -26.69 -0.23 -4.09 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.11 1.51 6.48 -51.93 -0.34 1.17 16 25 H 0.25 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.41 8.78 7.95 -40.82 -0.32 8.45 16 27 H 0.07 1.70 7.82 -51.93 -0.41 1.30 16 28 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 29 H 0.28 7.95 6.19 -40.82 -0.25 7.70 16 30 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 292.37 15.07 4.41 4.41 Total: -1.00 -31.82 292.37 -5.11 -36.93 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -3.91 Total: 8.59 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.96 Total: -7.44 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.29 Total: -47.72 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.15 Total: -14.35 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.60 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.82 -5.11 -36.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431129324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.830 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds