Wall clock time and date at job start Mon Mar 30 2020 18:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34257 * 126.52430 * 2 1 4 4 C 1.34049 * 108.22362 * 180.23135 * 3 2 1 5 5 N 1.29935 * 109.24600 * 359.76981 * 4 3 2 6 6 C 1.36063 * 108.47439 * 0.02562 * 5 4 3 7 7 C 1.47424 * 126.44841 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00038 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99874 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 187.13201 * 14 12 11 17 17 H 1.48503 * 109.46796 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47212 * 300.00012 * 16 14 12 19 19 H 1.48498 * 109.47212 * 60.00416 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 H 1.09001 * 109.47270 * 270.15858 * 1 2 3 23 23 H 1.09002 * 109.47217 * 30.15598 * 1 2 3 24 24 H 1.08992 * 109.47310 * 150.15838 * 1 2 3 25 25 H 1.08001 * 125.38002 * 179.73891 * 4 3 2 26 26 H 0.97003 * 119.99966 * 359.97438 * 9 7 6 27 27 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 28 28 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 29 29 H 0.97004 * 120.00131 * 355.39941 * 15 14 12 30 30 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 31 31 H 1.08997 * 117.50012 * 0.02562 * 20 11 10 32 32 H 1.09003 * 117.50343 * 359.97438 * 21 11 10 33 33 H 1.08997 * 117.49643 * 144.97660 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6580 -0.0051 5 7 3.6002 -0.6412 -0.0034 6 6 2.3170 -1.0936 0.0024 7 6 1.8853 -2.5032 0.0056 8 8 0.7002 -2.7762 0.0104 9 7 2.8040 -3.4893 0.0033 10 6 2.3750 -4.8901 0.0059 11 6 3.6007 -5.7987 0.1198 12 6 4.5891 -5.7019 -1.0137 13 1 5.4483 -5.0533 -0.9271 14 6 4.3965 -6.4416 -2.1612 15 7 3.2831 -7.1218 -2.3260 16 14 5.7172 -6.4774 -3.4819 17 1 5.2696 -7.3382 -4.6062 18 1 5.9571 -5.0990 -3.9795 19 1 6.9743 -7.0232 -2.9101 20 6 4.1561 -6.0634 1.5207 21 6 3.4064 -7.1686 0.7727 22 1 -0.3634 0.0028 1.0277 23 1 -0.3634 0.8886 -0.5163 24 1 -0.3633 -0.8913 -0.5113 25 1 4.4489 1.2977 -0.0104 26 1 3.7492 -3.2715 -0.0009 27 1 1.8449 -5.1095 -0.9209 28 1 1.7126 -5.0656 0.8535 29 1 2.6264 -7.1575 -1.6129 30 1 5.2363 -6.1676 1.6224 31 1 3.6480 -5.5907 2.3612 32 1 2.4054 -7.4225 1.1215 33 1 3.9931 -8.0000 0.3821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431129324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:36 Heat of formation + Delta-G solvation = -25.076282 kcal Electronic energy + Delta-G solvation = -18032.577964 eV Core-core repulsion = 15059.521560 eV Total energy + Delta-G solvation = -2973.056404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.44095 -40.63801 -38.78503 -35.93063 -35.05400 -33.96051 -33.37958 -29.21254 -27.63037 -26.87474 -24.65951 -23.17525 -22.78477 -21.63431 -21.32949 -19.36743 -18.46066 -17.92351 -17.22444 -16.92174 -16.28875 -15.78446 -15.63535 -15.53532 -15.05649 -14.61308 -14.48054 -14.20862 -13.96695 -13.65982 -13.36563 -12.85861 -12.64729 -12.43151 -12.25480 -11.96570 -11.83216 -11.57389 -11.22226 -10.59853 -10.47448 -10.34894 -10.15916 -9.82969 -8.55156 -6.30296 0.03689 1.06822 1.54212 1.57121 1.60701 1.79570 2.15697 2.23957 2.57690 3.10141 3.21552 3.29022 3.62629 3.82409 4.01684 4.22747 4.31977 4.39262 4.42288 4.50203 4.57068 4.76033 4.81036 4.85933 5.02918 5.09749 5.18758 5.29453 5.40629 5.47315 6.11872 6.23400 6.36236 6.65300 6.69221 7.10814 7.52174 8.84887 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.006128 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.384197 B = 4567.914905 C = 5007.490216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.048 3.952 3 O -0.195 6.195 4 C 0.197 3.803 5 N -0.501 5.501 6 C -0.109 4.109 7 C 0.585 3.415 8 O -0.575 6.575 9 N -0.684 5.684 10 C 0.173 3.827 11 C -0.023 4.023 12 C -0.579 4.579 13 H 0.049 0.951 14 C -0.018 4.018 15 N -0.929 5.929 16 Si 1.108 2.892 17 H -0.288 1.288 18 H -0.277 1.277 19 H -0.270 1.270 20 C -0.166 4.166 21 C -0.171 4.171 22 H 0.105 0.895 23 H 0.110 0.890 24 H 0.090 0.910 25 H 0.308 0.692 26 H 0.411 0.589 27 H 0.029 0.971 28 H 0.050 0.950 29 H 0.265 0.735 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 16.218 5.655 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.009 4.009 3 O -0.082 6.082 4 C -0.031 4.031 5 N -0.229 5.229 6 C -0.227 4.227 7 C 0.372 3.628 8 O -0.457 6.457 9 N -0.332 5.332 10 C 0.049 3.951 11 C -0.024 4.024 12 C -0.616 4.616 13 H 0.067 0.933 14 C -0.219 4.219 15 N -0.565 5.565 16 Si 0.931 3.069 17 H -0.214 1.214 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.203 4.203 21 C -0.209 4.209 22 H 0.124 0.876 23 H 0.129 0.871 24 H 0.109 0.891 25 H 0.323 0.677 26 H 0.247 0.753 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.513 15.027 4.153 15.599 hybrid contribution -0.403 0.587 1.418 1.587 sum -0.916 15.614 5.571 16.604 Atomic orbital electron populations 1.20655 0.80980 1.05731 1.05606 1.24068 0.96153 0.82938 0.97749 1.84402 1.18917 1.35306 1.69566 1.29208 0.85930 0.90594 0.97409 1.70730 1.21552 1.12278 1.18355 1.21340 0.90240 0.94871 1.16238 1.17198 0.85276 0.83822 0.76457 1.90698 1.17143 1.84120 1.53738 1.45680 1.10425 1.05630 1.71459 1.20740 0.95914 0.79967 0.98441 1.19333 0.95265 0.94695 0.93109 1.21455 1.09331 1.28895 1.01951 0.93322 1.27016 1.00441 0.92884 1.01525 1.70842 1.08171 1.42445 1.35037 0.83033 0.73289 0.76889 0.73654 1.21376 1.20243 1.19482 1.22903 0.99378 1.03102 0.94945 1.22700 1.00210 0.92853 1.05186 0.87630 0.87147 0.89126 0.67697 0.75288 0.95250 0.93180 0.92429 0.89610 0.89115 0.89746 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.54 9.88 71.24 0.70 -0.83 16 2 C 0.05 1.29 7.44 25.19 0.19 1.48 16 3 O -0.20 -4.15 10.73 0.39 0.00 -4.14 16 4 C 0.20 3.80 13.19 130.52 1.72 5.53 16 5 N -0.50 -15.14 11.06 -305.15 -3.37 -18.51 16 6 C -0.11 -3.71 6.99 40.41 0.28 -3.42 16 7 C 0.59 24.25 7.81 86.66 0.68 24.92 16 8 O -0.58 -25.54 14.80 -4.06 -0.06 -25.60 16 9 N -0.68 -29.89 5.45 -466.36 -2.54 -32.44 16 10 C 0.17 8.23 5.43 86.38 0.47 8.70 16 11 C -0.02 -1.12 0.99 -52.93 -0.05 -1.18 16 12 C -0.58 -31.24 8.44 25.60 0.22 -31.02 16 13 H 0.05 2.62 7.82 -2.91 -0.02 2.59 16 14 C -0.02 -1.01 5.39 84.66 0.46 -0.55 16 15 N -0.93 -55.49 13.57 21.45 0.29 -55.20 16 16 Si 1.11 49.87 29.91 68.60 2.05 51.92 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 C -0.17 -6.88 9.96 30.62 0.30 -6.58 16 21 C -0.17 -7.74 8.74 30.62 0.27 -7.48 16 22 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.09 2.38 6.48 -2.39 -0.02 2.36 16 25 H 0.31 1.81 8.06 -2.91 -0.02 1.79 16 26 H 0.41 17.83 7.95 -92.71 -0.74 17.09 16 27 H 0.03 1.58 7.82 -2.39 -0.02 1.57 16 28 H 0.05 2.26 8.11 -2.39 -0.02 2.24 16 29 H 0.27 15.89 6.19 -92.71 -0.57 15.32 16 30 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -70.73 292.37 2.20 -68.54 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.59 Total: 25.89 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.23 Total: -10.45 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -5.63 Total: -106.15 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.06 Total: -29.74 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Total: -70.73 2.20 -68.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431129324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.460 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds