Wall clock time and date at job start Mon Mar 30 2020 18:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00209 * 2 1 4 4 N 1.46497 * 109.46657 * 124.99912 * 3 2 1 5 5 C 1.46502 * 120.00336 * 263.58034 * 4 3 2 6 6 C 1.50706 * 109.46922 * 270.00424 * 5 4 3 7 7 H 1.07996 * 120.00270 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99644 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00422 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99798 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47279 * 60.00005 * 10 8 6 12 12 H 1.48508 * 109.46802 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46970 * 299.99768 * 10 8 6 14 14 C 1.34781 * 119.99953 * 83.58559 * 4 3 2 15 15 O 1.21608 * 119.99998 * 183.74352 * 14 4 3 16 16 C 1.47415 * 119.99854 * 3.74386 * 14 4 3 17 17 C 1.36090 * 126.45089 * 173.71971 * 16 14 4 18 18 O 1.34256 * 106.95516 * 180.26353 * 17 16 14 19 19 C 1.34055 * 108.22504 * 0.02562 * 18 17 16 20 20 C 1.50699 * 125.38021 * 180.02562 * 19 18 17 21 21 N 1.29934 * 109.24156 * 359.97438 * 19 18 17 22 22 H 1.07991 * 119.99981 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99778 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.00117 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47047 * 5.00454 * 3 2 1 26 26 H 1.08994 * 109.47123 * 245.00521 * 3 2 1 27 27 H 1.09000 * 109.46779 * 30.00129 * 5 4 3 28 28 H 1.08995 * 109.47354 * 150.00566 * 5 4 3 29 29 H 0.96997 * 119.99959 * 179.97438 * 9 8 6 30 30 H 1.07999 * 126.52250 * 0.23082 * 17 16 14 31 31 H 1.08997 * 109.46706 * 269.99500 * 20 19 18 32 32 H 1.09001 * 109.46887 * 29.99245 * 20 19 18 33 33 H 1.08993 * 109.47254 * 149.99682 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6079 1.9909 2.3816 6 6 3.0202 3.4397 2.3337 7 1 3.5200 3.8302 1.4596 8 6 2.7593 4.2664 3.4057 9 7 2.1502 3.7909 4.4700 10 14 3.2697 6.0624 3.3460 11 1 2.5948 6.7311 2.2046 12 1 2.8775 6.7308 4.6129 13 1 4.7417 6.1531 3.1729 14 6 4.2046 0.7500 1.0222 15 8 4.9499 0.7123 1.9824 16 6 4.6254 0.1593 -0.2612 17 6 5.8532 -0.3504 -0.5528 18 8 5.8082 -0.7761 -1.8253 19 6 4.5804 -0.5332 -2.3055 20 6 4.1083 -0.8591 -3.6990 21 7 3.8614 0.0268 -1.3793 22 1 -0.5400 -0.9352 -0.0004 23 1 -0.5400 0.9354 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3587 2.1316 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 1.5274 1.9246 2.5088 28 1 3.1032 1.4998 3.2192 29 1 1.9670 4.3726 5.2243 30 1 6.7022 -0.4020 0.1126 31 1 4.3033 -0.0116 -4.3561 32 1 4.6419 -1.7351 -4.0678 33 1 3.0384 -1.0662 -3.6810 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590408757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:05 Heat of formation + Delta-G solvation = 18.772053 kcal Electronic energy + Delta-G solvation = -18206.478502 eV Core-core repulsion = 15235.323505 eV Total energy + Delta-G solvation = -2971.154997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.28972 -38.85604 -35.64689 -34.67424 -33.12424 -32.17600 -31.90883 -28.01969 -27.47221 -25.41652 -24.13102 -22.16871 -21.25924 -19.80525 -18.93003 -17.14706 -16.80409 -16.43571 -16.08597 -15.43200 -14.57467 -14.40924 -14.21946 -13.86765 -13.63761 -13.29438 -12.79279 -12.67017 -12.58369 -12.19943 -11.71121 -11.26467 -11.13722 -10.92552 -10.76916 -10.55228 -10.29776 -10.17028 -9.60188 -9.22768 -8.89908 -8.83047 -8.40669 -7.63560 -6.01934 -4.07074 1.32971 2.24782 2.66568 2.69508 3.33972 3.37785 3.40905 3.76930 3.92284 4.16306 4.46709 4.90185 5.05586 5.18038 5.27144 5.32091 5.41096 5.47685 5.64954 5.70416 5.82225 5.98353 6.11730 6.32253 6.61363 7.01748 7.05887 7.19059 7.46162 7.55695 7.66103 7.94549 8.24680 8.40809 8.87511 9.04544 9.57646 11.06074 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.006458 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.681756 B = 4334.906495 C = 4839.490985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C 0.129 3.871 4 N -0.573 5.573 5 C 0.245 3.755 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.585 3.415 15 O -0.540 6.540 16 C -0.053 4.053 17 C -0.005 4.005 18 O -0.203 6.203 19 C 0.179 3.821 20 C -0.055 4.055 21 N -0.450 5.450 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.228 0.772 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -9.481 -15.697 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.153 4.153 3 C 0.006 3.994 4 N -0.302 5.302 5 C 0.127 3.873 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.370 3.630 15 O -0.418 6.418 16 C -0.173 4.173 17 C -0.078 4.078 18 O -0.089 6.089 19 C -0.029 4.029 20 C -0.112 4.112 21 N -0.182 5.182 22 H 0.108 0.892 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.124 0.876 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.517 -9.239 -15.062 17.735 hybrid contribution 0.907 0.800 0.215 1.228 sum 2.423 -8.440 -14.848 17.250 Atomic orbital electron populations 1.23712 0.95836 1.01301 1.03291 1.23254 0.95692 0.99041 0.97362 1.20947 0.92863 0.94608 0.91019 1.48068 1.13268 1.52505 1.16310 1.19375 0.96099 0.91899 0.79970 1.21396 1.38792 0.94261 1.02240 0.92462 1.24925 0.95051 0.98915 0.95098 1.69930 1.41479 1.36131 1.05735 0.86550 0.79127 0.84458 0.77235 1.20232 1.21133 1.20190 1.16796 0.82697 0.78913 0.84615 1.90785 1.53187 1.60004 1.37810 1.22264 0.92313 1.06964 0.95752 1.25213 1.00834 0.98935 0.82803 1.84332 1.35108 1.63851 1.25633 1.26472 0.79184 0.98520 0.98743 1.20244 1.02845 1.03296 0.84861 1.71081 1.31563 1.16201 0.99352 0.89199 0.88589 0.88362 0.90289 0.87596 0.94621 0.93640 0.92641 0.75557 0.88998 0.89540 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.02 14.32 29.01 0.42 -2.60 16 2 C -0.13 -2.24 8.94 -36.02 -0.32 -2.57 16 3 C 0.13 2.45 5.45 -5.19 -0.03 2.42 16 4 N -0.57 -13.20 2.46 -177.71 -0.44 -13.64 16 5 C 0.25 6.68 5.16 -5.19 -0.03 6.65 16 6 C -0.53 -15.34 9.39 -34.44 -0.32 -15.66 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 10 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.58 13.23 7.61 -12.52 -0.10 13.14 16 15 O -0.54 -13.93 16.45 5.27 0.09 -13.84 16 16 C -0.05 -0.95 6.64 -83.02 -0.55 -1.50 16 17 C 0.00 -0.07 11.95 29.96 0.36 0.29 16 18 O -0.20 -2.62 10.73 6.50 0.07 -2.55 16 19 C 0.18 2.20 8.30 -13.08 -0.11 2.09 16 20 C -0.06 -0.38 10.51 36.01 0.38 0.00 16 21 N -0.45 -7.01 6.98 -7.65 -0.05 -7.06 16 22 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 23 H 0.10 1.39 7.84 -52.48 -0.41 0.98 16 24 H 0.10 1.66 7.83 -52.49 -0.41 1.25 16 25 H 0.08 1.52 7.67 -51.93 -0.40 1.13 16 26 H 0.11 1.91 5.31 -51.93 -0.28 1.64 16 27 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 28 H 0.05 1.37 7.37 -51.93 -0.38 0.99 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.23 2.73 8.06 -52.49 -0.42 2.31 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -34.04 295.24 -4.53 -38.56 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.96 Total: -0.83 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.40 Total: 3.97 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.25 Total: -46.87 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.16 Total: -16.39 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.04 -4.53 -38.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590408757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.335 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds