Wall clock time and date at job start Mon Mar 30 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00147 * 2 1 4 4 N 1.46497 * 109.47275 * 124.37012 * 3 2 1 5 5 C 1.46494 * 120.00343 * 274.84573 * 4 3 2 6 6 C 1.50706 * 109.46871 * 269.99940 * 5 4 3 7 7 H 1.07999 * 120.00350 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99654 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99590 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00092 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47017 * 90.00278 * 10 8 6 12 12 H 1.48499 * 109.47112 * 209.99599 * 10 8 6 13 13 H 1.48493 * 109.47496 * 330.00082 * 10 8 6 14 14 C 1.34777 * 119.99855 * 94.83948 * 4 3 2 15 15 O 1.21602 * 120.00084 * 184.95766 * 14 4 3 16 16 C 1.47402 * 119.99833 * 4.96566 * 14 4 3 17 17 C 1.37359 * 128.56364 * 320.42596 * 16 14 4 18 18 O 1.33495 * 106.33816 * 180.23263 * 17 16 14 19 19 N 1.20653 * 113.15925 * 359.51088 * 18 17 16 20 20 C 1.30021 * 112.30175 * 0.51226 * 19 18 17 21 21 C 1.50698 * 127.33551 * 179.67717 * 20 19 18 22 22 H 1.07992 * 119.99869 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.99599 * 180.02562 * 1 2 3 24 24 H 1.07998 * 120.00271 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46767 * 4.37018 * 3 2 1 26 26 H 1.09000 * 109.47639 * 244.37526 * 3 2 1 27 27 H 1.09008 * 109.47484 * 29.99345 * 5 4 3 28 28 H 1.08998 * 109.47891 * 149.99625 * 5 4 3 29 29 H 0.97000 * 120.00112 * 180.02562 * 9 8 6 30 30 H 1.08001 * 126.82701 * 359.96512 * 17 16 14 31 31 H 1.09004 * 109.47129 * 270.02167 * 21 20 19 32 32 H 1.08996 * 109.46876 * 30.02353 * 21 20 19 33 33 H 1.09002 * 109.46567 * 150.02436 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9830 1.3381 1.1400 5 6 2.5061 1.7788 2.4532 6 6 2.6935 3.2686 2.5817 7 1 3.1251 3.8309 1.7668 8 6 2.3139 3.9139 3.7396 9 7 2.4779 5.2139 3.8519 10 14 1.5668 2.9415 5.1487 11 1 2.6463 2.4766 6.0564 12 1 0.6248 3.8071 5.9027 13 1 0.8356 1.7679 4.6074 14 6 4.2677 0.9630 0.9807 15 8 5.0077 0.9039 1.9438 16 6 4.7756 0.6245 -0.3609 17 6 4.1455 -0.0692 -1.3652 18 8 5.0082 -0.1238 -2.3825 19 7 6.0518 0.4353 -2.1501 20 6 6.0822 0.9468 -0.9551 21 6 7.2147 1.7074 -0.3149 22 1 -0.5399 0.9352 0.0004 23 1 -0.5399 -0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3577 2.1321 0.0783 26 1 2.6301 1.3976 -0.9266 27 1 1.4485 1.5355 2.5562 28 1 3.0731 1.2726 3.2345 29 1 2.2113 5.6678 4.6666 30 1 3.1515 -0.4907 -1.3359 31 1 7.8716 1.0107 0.2060 32 1 7.7798 2.2333 -1.0844 33 1 6.8118 2.4281 0.3967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601592438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:14 Heat of formation + Delta-G solvation = 55.752785 kcal Electronic energy + Delta-G solvation = -18343.639478 eV Core-core repulsion = 15374.088085 eV Total energy + Delta-G solvation = -2969.551392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.78673 -39.22431 -35.98462 -34.36125 -33.32489 -32.36227 -31.83299 -28.81789 -28.16449 -25.95562 -24.36029 -22.04837 -21.25243 -20.24546 -18.99418 -17.66292 -17.45344 -16.97319 -16.33832 -15.67752 -15.13008 -14.51270 -14.18639 -13.88324 -13.28691 -13.18910 -12.94940 -12.74508 -12.40952 -12.37747 -11.83828 -11.72751 -11.37898 -11.14843 -11.00024 -10.58819 -10.25879 -9.80883 -9.76076 -9.54510 -9.42248 -9.25489 -8.64662 -7.90750 -6.14569 -4.14410 1.31217 1.95662 2.19868 3.04841 3.25401 3.31345 3.33483 3.36688 3.78764 4.22686 4.34454 4.45392 4.88321 5.06129 5.10641 5.16788 5.22844 5.37661 5.47619 5.67596 5.72411 5.81729 5.83114 6.01899 6.26700 6.56429 6.60169 6.70215 6.86006 7.19208 7.52812 8.03796 8.29350 8.38587 8.74153 8.88665 9.44854 10.98522 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022294 B = 0.007491 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.636698 B = 3736.797731 C = 4572.335975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.185 4.185 3 C 0.125 3.875 4 N -0.578 5.578 5 C 0.218 3.782 6 C -0.533 4.533 7 H 0.075 0.925 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.585 3.415 15 O -0.525 6.525 16 C -0.232 4.232 17 C -0.031 4.031 18 O 0.091 5.909 19 N -0.365 5.365 20 C 0.064 3.936 21 C -0.075 4.075 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.226 0.774 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -10.698 -10.474 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.001 3.999 4 N -0.308 5.308 5 C 0.098 3.902 6 C -0.572 4.572 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.371 3.629 15 O -0.402 6.402 16 C -0.239 4.239 17 C -0.112 4.112 18 O 0.031 5.969 19 N -0.073 5.073 20 C -0.098 4.098 21 C -0.133 4.133 22 H 0.121 0.879 23 H 0.116 0.884 24 H 0.125 0.875 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.242 0.758 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.206 -10.592 -10.816 15.140 hybrid contribution -1.008 -0.265 1.526 1.848 sum -0.803 -10.858 -9.290 14.313 Atomic orbital electron populations 1.23911 0.95736 1.02173 0.98717 1.23429 0.96638 0.98738 1.01592 1.20832 0.93491 0.95714 0.89867 1.47768 1.07947 1.63274 1.11806 1.19720 0.94745 0.96278 0.79431 1.21307 1.42423 0.90455 1.02994 0.90649 1.24836 0.95167 0.94787 0.98027 1.69890 1.47502 1.08173 1.27732 0.86870 0.79697 0.80281 0.83009 1.19819 1.20982 1.18983 1.16857 0.82348 0.77995 0.85693 1.90778 1.56252 1.52946 1.40198 1.22636 0.95599 1.07575 0.98091 1.26690 0.97507 1.00411 0.86616 1.84517 1.18294 1.56465 1.37624 1.73604 1.02983 1.12699 1.17980 1.24849 0.95824 0.99300 0.89814 1.20216 0.93439 0.99326 1.00281 0.87925 0.88405 0.87498 0.88852 0.90028 0.94826 0.94204 0.92460 0.75821 0.89644 0.90493 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 14.32 29.01 0.42 -1.39 16 2 C -0.18 -2.21 8.51 -36.03 -0.31 -2.52 16 3 C 0.12 1.87 5.39 -5.19 -0.03 1.84 16 4 N -0.58 -11.54 2.44 -177.71 -0.43 -11.97 16 5 C 0.22 5.17 4.29 -5.19 -0.02 5.15 16 6 C -0.53 -14.91 9.94 -34.43 -0.34 -15.25 16 7 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 10 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 14 C 0.59 11.98 7.64 -12.53 -0.10 11.89 16 15 O -0.52 -12.72 16.66 5.28 0.09 -12.63 16 16 C -0.23 -3.85 5.65 -102.89 -0.58 -4.43 16 17 C -0.03 -0.39 9.98 30.41 0.30 -0.09 16 18 O 0.09 1.23 11.06 18.65 0.21 1.43 16 19 N -0.36 -5.60 12.01 34.78 0.42 -5.18 16 20 C 0.06 1.04 7.59 -79.76 -0.61 0.43 16 21 C -0.08 -1.08 10.49 36.00 0.38 -0.70 16 22 H 0.10 1.10 7.84 -52.49 -0.41 0.69 16 23 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 24 H 0.11 1.13 7.11 -52.49 -0.37 0.75 16 25 H 0.09 1.47 7.76 -51.93 -0.40 1.07 16 26 H 0.08 1.08 5.16 -51.93 -0.27 0.81 16 27 H 0.03 0.76 7.13 -51.92 -0.37 0.39 16 28 H 0.04 1.01 6.79 -51.93 -0.35 0.66 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.23 2.04 4.95 -52.49 -0.26 1.78 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 289.19 15.07 4.36 4.36 Total: -1.00 -33.21 289.19 -3.96 -37.17 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -3.72 Total: -0.28 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.98 Total: -3.03 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.76 Total: -43.43 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.29 Total: -11.20 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.21 -3.96 -37.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.922 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds