Wall clock time and date at job start Mon Mar 30 2020 18:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35349 * 126.37642 * 2 1 4 4 C 1.41545 * 105.50267 * 180.09274 * 3 2 1 5 5 C 1.47587 * 126.52328 * 179.88419 * 4 3 2 6 6 O 1.21485 * 119.99872 * 4.55069 * 5 4 3 7 7 O 1.34730 * 119.99603 * 184.55387 * 5 4 3 8 8 C 1.45201 * 116.99775 * 185.18368 * 7 5 4 9 9 C 1.52993 * 109.47087 * 182.53549 * 8 7 5 10 10 C 1.50701 * 115.55288 * 65.10683 * 9 8 7 11 11 H 1.08002 * 119.99413 * 264.90328 * 10 9 8 12 12 C 1.37872 * 120.00448 * 84.89420 * 10 9 8 13 13 N 1.31521 * 119.99507 * 352.94681 * 12 10 9 14 14 Si 1.86797 * 120.00422 * 172.94508 * 12 10 9 15 15 H 1.48503 * 109.47050 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47226 * 120.00186 * 14 12 10 17 17 H 1.48500 * 109.47389 * 240.00195 * 14 12 10 18 18 C 1.52998 * 117.50126 * 279.43366 * 9 8 7 19 19 C 1.52999 * 117.50034 * 210.77516 * 9 8 7 20 20 N 1.31855 * 106.94848 * 359.61483 * 4 3 2 21 21 N 1.28470 * 110.06667 * 0.24314 * 20 4 3 22 22 H 0.96999 * 124.87713 * 179.97438 * 21 20 4 23 23 H 1.09003 * 109.47340 * 270.30886 * 1 2 3 24 24 H 1.08995 * 109.47480 * 30.31345 * 1 2 3 25 25 H 1.09006 * 109.46963 * 150.31494 * 1 2 3 26 26 H 1.07998 * 127.24903 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.46992 * 62.53410 * 8 7 5 28 28 H 1.09005 * 109.47082 * 302.53914 * 8 7 5 29 29 H 0.97006 * 119.99818 * 185.03079 * 13 12 10 30 30 H 1.09003 * 117.50132 * 359.97438 * 18 9 8 31 31 H 1.09000 * 117.50070 * 145.01814 * 18 9 8 32 32 H 1.09001 * 117.50185 * 214.98280 * 19 9 8 33 33 H 1.09005 * 117.49846 * 359.97137 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0898 0.0000 4 6 3.6323 0.5854 -0.0022 5 6 4.8756 1.3806 -0.0055 6 8 4.8224 2.5915 0.0770 7 8 6.0696 0.7636 -0.0999 8 6 7.2531 1.5963 0.0192 9 6 8.5034 0.7363 -0.1757 10 6 8.6699 0.1328 -1.5465 11 1 8.3252 -0.8724 -1.7393 12 6 9.2622 0.8637 -2.5544 13 7 9.5555 2.1313 -2.3621 14 14 9.6479 0.0539 -4.1929 15 1 9.2220 -1.3683 -4.1545 16 1 8.9190 0.7592 -5.2775 17 1 11.1087 0.1269 -4.4494 18 6 8.9910 -0.0830 1.0209 19 6 9.7718 1.1543 0.5709 20 7 3.5421 -0.7300 0.0051 21 7 2.3080 -1.0872 0.0065 22 1 1.9965 -2.0058 0.0111 23 1 -0.3634 0.0055 1.0277 24 1 -0.3634 0.8871 -0.5187 25 1 -0.3633 -0.8929 -0.5090 26 1 2.0053 2.1259 -0.0004 27 1 7.2774 2.0538 1.0082 28 1 7.2265 2.3766 -0.7415 29 1 9.9045 2.6647 -3.0934 30 1 8.4212 -0.0091 1.9472 31 1 9.4324 -1.0584 0.8166 32 1 10.7266 0.9924 0.0708 33 1 9.7156 2.0422 1.2006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:20 Heat of formation + Delta-G solvation = 10.258227 kcal Electronic energy + Delta-G solvation = -17746.217847 eV Core-core repulsion = 14774.693662 eV Total energy + Delta-G solvation = -2971.524185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.66785 -39.36530 -36.67940 -35.11578 -32.87804 -31.91901 -31.87772 -27.41733 -26.83578 -25.32727 -23.89062 -21.29260 -21.11579 -19.73601 -19.18693 -17.74380 -16.63492 -16.42151 -16.00303 -15.30923 -15.12407 -14.52103 -13.94297 -13.82304 -13.37608 -13.25217 -12.96419 -12.53550 -12.09176 -12.02762 -11.57173 -10.94257 -10.80424 -10.77765 -10.48867 -10.24790 -10.14773 -9.76346 -9.51703 -9.40309 -9.00827 -8.75949 -8.42176 -8.14374 -6.00155 -4.05181 1.63178 2.02828 2.74711 3.31772 3.39884 3.41791 3.45202 3.57174 4.44497 4.53673 4.57736 4.87730 5.19364 5.27651 5.33291 5.49357 5.55283 5.67867 5.82156 6.04673 6.27692 6.34237 6.40261 6.58933 6.70960 6.79260 6.93626 7.07964 7.27808 7.42496 7.51222 7.84517 7.93920 8.42928 8.52856 8.96586 9.59905 11.08684 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.005538 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.548159 B = 5055.188433 C = 5459.936502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.005 3.995 3 C -0.177 4.177 4 C 0.012 3.988 5 C 0.543 3.457 6 O -0.512 6.512 7 O -0.321 6.321 8 C 0.114 3.886 9 C 0.038 3.962 10 C -0.487 4.487 11 H 0.064 0.936 12 C 0.069 3.931 13 N -0.883 5.883 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.204 4.204 19 C -0.146 4.146 20 N -0.225 5.225 21 N -0.382 5.382 22 H 0.445 0.555 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.164 0.836 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.167 -4.555 5.112 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.204 4.204 4 C -0.147 4.147 5 C 0.385 3.615 6 O -0.400 6.400 7 O -0.235 6.235 8 C 0.041 3.959 9 C 0.037 3.963 10 C -0.524 4.524 11 H 0.082 0.918 12 C -0.134 4.134 13 N -0.520 5.520 14 Si 0.719 3.281 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.241 4.241 19 C -0.183 4.183 20 N -0.062 5.062 21 N -0.098 5.098 22 H 0.289 0.711 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.182 0.818 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.280 -4.941 5.049 16.834 hybrid contribution -0.340 0.087 -0.955 1.017 sum -15.621 -4.854 4.094 16.862 Atomic orbital electron populations 1.20331 0.86495 1.03952 1.03290 1.21438 0.95397 0.87165 1.08011 1.21508 0.90009 0.99904 1.08996 1.21027 0.93045 0.89634 1.10984 1.19615 0.83517 0.85201 0.73180 1.90805 1.87993 1.14327 1.46896 1.86662 1.13833 1.42288 1.80677 1.22966 0.80721 0.93045 0.99159 1.18769 0.88734 0.96704 0.92077 1.20439 1.38429 1.00542 0.93029 0.91782 1.25014 0.94864 0.94927 0.98619 1.69986 1.44007 1.06149 1.31852 0.86535 0.77988 0.79851 0.83691 1.19619 1.21054 1.20929 1.22996 1.06126 0.95999 0.99010 1.22551 0.97384 0.95765 1.02628 1.73861 1.00482 1.15078 1.16762 1.43460 1.03131 1.09588 1.53576 0.71090 0.90338 0.89510 0.91109 0.81820 0.94217 0.90257 0.92960 0.91494 0.90085 0.89462 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.44 36.01 0.38 -0.09 16 2 C 0.00 0.05 7.23 -82.21 -0.59 -0.54 16 3 C -0.18 -2.48 10.73 -39.35 -0.42 -2.90 16 4 C 0.01 0.22 7.16 -82.78 -0.59 -0.37 16 5 C 0.54 11.84 7.96 34.54 0.27 12.12 16 6 O -0.51 -11.83 16.67 -19.25 -0.32 -12.15 16 7 O -0.32 -7.74 10.17 -40.57 -0.41 -8.15 16 8 C 0.11 2.85 5.35 37.15 0.20 3.05 16 9 C 0.04 0.97 1.60 -155.67 -0.25 0.72 16 10 C -0.49 -13.76 8.77 -34.44 -0.30 -14.06 16 11 H 0.06 1.84 7.82 -52.49 -0.41 1.43 16 12 C 0.07 1.93 5.39 -17.82 -0.10 1.83 16 13 N -0.88 -25.50 12.96 55.43 0.72 -24.78 16 14 Si 0.89 21.67 29.55 -169.99 -5.02 16.65 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C -0.20 -4.62 9.96 -26.70 -0.27 -4.89 16 19 C -0.15 -3.47 9.46 -26.70 -0.25 -3.72 16 20 N -0.23 -3.74 12.24 33.41 0.41 -3.33 16 21 N -0.38 -4.32 6.83 33.50 0.23 -4.09 16 22 H 0.44 3.10 8.96 -190.44 -1.71 1.40 16 23 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 28 H 0.08 2.16 8.04 -51.93 -0.42 1.75 16 29 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 33 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -33.49 300.06 -7.28 -40.76 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.47 Total: -0.58 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.92 Total: -8.85 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 1.36 Total: -32.20 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.73 Total: -20.30 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.49 -7.28 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.020 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds