Wall clock time and date at job start Mon Mar 30 2020 18:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35349 * 126.37642 * 2 1 4 4 C 1.41545 * 105.50267 * 180.09274 * 3 2 1 5 5 C 1.47587 * 126.52328 * 179.88419 * 4 3 2 6 6 O 1.21485 * 119.99872 * 4.55069 * 5 4 3 7 7 O 1.34730 * 119.99603 * 184.55387 * 5 4 3 8 8 C 1.45201 * 116.99775 * 185.18368 * 7 5 4 9 9 C 1.52993 * 109.47087 * 182.53549 * 8 7 5 10 10 C 1.50701 * 115.55288 * 65.10683 * 9 8 7 11 11 H 1.08002 * 119.99413 * 264.90328 * 10 9 8 12 12 C 1.37872 * 120.00448 * 84.89420 * 10 9 8 13 13 N 1.31521 * 119.99507 * 352.94681 * 12 10 9 14 14 Si 1.86797 * 120.00422 * 172.94508 * 12 10 9 15 15 H 1.48503 * 109.47050 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47226 * 120.00186 * 14 12 10 17 17 H 1.48500 * 109.47389 * 240.00195 * 14 12 10 18 18 C 1.52998 * 117.50126 * 279.43366 * 9 8 7 19 19 C 1.52999 * 117.50034 * 210.77516 * 9 8 7 20 20 N 1.31855 * 106.94848 * 359.61483 * 4 3 2 21 21 N 1.28470 * 110.06667 * 0.24314 * 20 4 3 22 22 H 0.96999 * 124.87713 * 179.97438 * 21 20 4 23 23 H 1.09003 * 109.47340 * 270.30886 * 1 2 3 24 24 H 1.08995 * 109.47480 * 30.31345 * 1 2 3 25 25 H 1.09006 * 109.46963 * 150.31494 * 1 2 3 26 26 H 1.07998 * 127.24903 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.46992 * 62.53410 * 8 7 5 28 28 H 1.09005 * 109.47082 * 302.53914 * 8 7 5 29 29 H 0.97006 * 119.99818 * 185.03079 * 13 12 10 30 30 H 1.09003 * 117.50132 * 359.97438 * 18 9 8 31 31 H 1.09000 * 117.50070 * 145.01814 * 18 9 8 32 32 H 1.09001 * 117.50185 * 214.98280 * 19 9 8 33 33 H 1.09005 * 117.49846 * 359.97137 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0898 0.0000 4 6 3.6323 0.5854 -0.0022 5 6 4.8756 1.3806 -0.0055 6 8 4.8224 2.5915 0.0770 7 8 6.0696 0.7636 -0.0999 8 6 7.2531 1.5963 0.0192 9 6 8.5034 0.7363 -0.1757 10 6 8.6699 0.1328 -1.5465 11 1 8.3252 -0.8724 -1.7393 12 6 9.2622 0.8637 -2.5544 13 7 9.5555 2.1313 -2.3621 14 14 9.6479 0.0539 -4.1929 15 1 9.2220 -1.3683 -4.1545 16 1 8.9190 0.7592 -5.2775 17 1 11.1087 0.1269 -4.4494 18 6 8.9910 -0.0830 1.0209 19 6 9.7718 1.1543 0.5709 20 7 3.5421 -0.7300 0.0051 21 7 2.3080 -1.0872 0.0065 22 1 1.9965 -2.0058 0.0111 23 1 -0.3634 0.0055 1.0277 24 1 -0.3634 0.8871 -0.5187 25 1 -0.3633 -0.8929 -0.5090 26 1 2.0053 2.1259 -0.0004 27 1 7.2774 2.0538 1.0082 28 1 7.2265 2.3766 -0.7415 29 1 9.9045 2.6647 -3.0934 30 1 8.4212 -0.0091 1.9472 31 1 9.4324 -1.0584 0.8166 32 1 10.7266 0.9924 0.0708 33 1 9.7156 2.0422 1.2006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:19 Heat of formation + Delta-G solvation = -11.483455 kcal Electronic energy + Delta-G solvation = -17747.160637 eV Core-core repulsion = 14774.693662 eV Total energy + Delta-G solvation = -2972.466975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.75824 -41.12873 -38.57632 -36.95868 -34.03876 -33.74714 -33.02961 -28.98118 -27.91152 -27.40148 -25.42906 -22.98853 -22.30293 -21.28275 -21.19165 -18.89881 -18.33893 -18.07568 -17.47714 -17.13240 -16.66216 -16.40547 -15.67959 -14.91280 -14.84558 -14.16235 -14.04810 -13.91734 -13.65833 -13.56706 -13.08757 -12.92145 -12.85615 -12.41466 -12.10398 -11.96383 -11.87354 -11.69575 -11.45319 -10.80851 -10.55766 -10.50816 -10.09701 -9.98558 -8.14009 -6.25593 0.23725 1.04268 1.38472 1.40448 1.52385 1.53839 2.05326 2.14824 2.41341 3.12536 3.29122 3.50119 3.77729 4.03131 4.12767 4.33324 4.38795 4.48549 4.50955 4.64262 4.83057 4.84657 4.95933 5.01931 5.11677 5.17167 5.30234 5.41329 5.55075 5.61184 5.74496 6.09488 6.34984 6.62676 6.78676 6.89613 7.42390 8.94447 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.005538 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.548159 B = 5055.188433 C = 5459.936502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.039 3.961 3 C -0.197 4.197 4 C -0.026 4.026 5 C 0.538 3.462 6 O -0.536 6.536 7 O -0.336 6.336 8 C 0.126 3.874 9 C 0.001 3.999 10 C -0.504 4.504 11 H 0.051 0.949 12 C 0.024 3.976 13 N -0.909 5.909 14 Si 0.953 3.047 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.274 1.274 18 C -0.178 4.178 19 C -0.142 4.142 20 N -0.256 5.256 21 N -0.358 5.358 22 H 0.464 0.536 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.173 0.827 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.345 -5.966 5.328 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.224 4.224 4 C -0.182 4.182 5 C 0.382 3.618 6 O -0.426 6.426 7 O -0.251 6.251 8 C 0.052 3.948 9 C 0.000 4.000 10 C -0.542 4.542 11 H 0.069 0.931 12 C -0.177 4.177 13 N -0.547 5.547 14 Si 0.778 3.222 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.215 4.215 19 C -0.179 4.179 20 N -0.095 5.095 21 N -0.077 5.077 22 H 0.314 0.686 23 H 0.117 0.883 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.190 0.810 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.465 -6.379 5.274 19.327 hybrid contribution 0.182 0.465 -0.991 1.110 sum -17.283 -5.914 4.283 18.762 Atomic orbital electron populations 1.20588 0.82220 1.05890 1.05179 1.22096 0.97360 0.85364 1.03879 1.21770 0.88710 1.01595 1.10340 1.20791 0.92530 0.90487 1.14435 1.20272 0.83846 0.85525 0.72139 1.90764 1.88265 1.15377 1.48163 1.86658 1.14521 1.42556 1.81322 1.22637 0.81363 0.92223 0.98577 1.18884 0.89838 0.98803 0.92433 1.20631 1.38679 1.00148 0.94752 0.93113 1.25723 0.94662 0.95389 1.01883 1.70083 1.44582 1.07184 1.32853 0.85585 0.78059 0.78941 0.79594 1.19246 1.20830 1.19987 1.23004 1.04620 0.95555 0.98353 1.22493 0.95925 0.97144 1.02372 1.73739 1.03189 1.14525 1.18051 1.43562 1.01858 1.11092 1.51219 0.68647 0.88261 0.88349 0.88426 0.80970 0.92833 0.93737 0.92877 0.89168 0.89633 0.90981 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.44 71.24 0.74 0.21 16 2 C 0.04 0.71 7.23 41.40 0.30 1.01 16 3 C -0.20 -5.30 10.73 22.42 0.24 -5.06 16 4 C -0.03 -0.94 7.16 42.42 0.30 -0.64 16 5 C 0.54 24.36 7.96 70.29 0.56 24.91 16 6 O -0.54 -25.81 16.67 19.88 0.33 -25.48 16 7 O -0.34 -16.80 10.17 -56.40 -0.57 -17.38 16 8 C 0.13 6.48 5.35 71.98 0.39 6.87 16 9 C 0.00 0.04 1.60 -52.93 -0.08 -0.04 16 10 C -0.50 -29.12 8.77 25.60 0.22 -28.90 16 11 H 0.05 2.98 7.82 -2.91 -0.02 2.95 16 12 C 0.02 1.35 5.39 84.65 0.46 1.80 16 13 N -0.91 -53.61 12.96 21.45 0.28 -53.33 16 14 Si 0.95 44.99 29.55 68.60 2.03 47.02 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 C -0.18 -7.94 9.96 30.62 0.30 -7.64 16 19 C -0.14 -6.77 9.46 30.62 0.29 -6.48 16 20 N -0.26 -8.36 12.24 -48.22 -0.59 -8.95 16 21 N -0.36 -7.22 6.83 -47.93 -0.33 -7.55 16 22 H 0.46 4.98 8.96 -219.99 -1.97 3.01 16 23 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.10 0.21 8.14 -2.38 -0.02 0.20 16 26 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 27 H 0.05 2.54 8.09 -2.39 -0.02 2.52 16 28 H 0.04 2.56 8.04 -2.38 -0.02 2.54 16 29 H 0.26 14.68 8.32 -92.70 -0.77 13.90 16 30 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.07 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.08 3.56 8.14 -2.38 -0.02 3.54 16 Total: -1.00 -75.01 300.06 4.02 -70.98 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -0.84 Total: 8.62 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 3.72 Total: -13.94 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -0.64 Total: -69.82 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.24 Total: -42.85 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.01 4.02 -70.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.498 kcal (2) G-P(sol) polarization free energy of solvation -75.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds