Wall clock time and date at job start Mon Mar 30 2020 18:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35451 * 126.77327 * 2 1 4 4 C 1.41387 * 103.98131 * 179.90916 * 3 2 1 5 5 C 1.50708 * 126.79999 * 180.09565 * 4 3 2 6 6 H 1.09001 * 109.86629 * 245.73182 * 5 4 3 7 7 C 1.54318 * 109.87927 * 124.55597 * 5 4 3 8 8 C 1.55155 * 102.93849 * 218.38804 * 7 5 4 9 9 C 1.54906 * 101.58678 * 35.50410 * 8 7 5 10 10 N 1.47026 * 109.88022 * 6.74436 * 5 4 3 11 11 C 1.34773 * 125.64913 * 298.39608 * 10 5 4 12 12 O 1.21685 * 120.00350 * 359.97438 * 11 10 5 13 13 C 1.46374 * 119.99576 * 180.02562 * 11 10 5 14 14 H 1.07996 * 120.00094 * 0.02562 * 13 11 10 15 15 C 1.40048 * 119.99670 * 179.97438 * 13 11 10 16 16 N 1.30672 * 120.00191 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99803 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47050 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46969 * 120.00630 * 17 15 13 20 20 H 1.48500 * 109.47104 * 240.00549 * 17 15 13 21 21 N 1.30172 * 106.39748 * 0.36162 * 4 3 2 22 22 O 1.20927 * 111.60264 * 359.76701 * 21 4 3 23 23 H 1.09002 * 109.47152 * 179.70748 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.70848 * 1 2 3 25 25 H 1.09004 * 109.47113 * 299.70829 * 1 2 3 26 26 H 1.07997 * 128.00919 * 0.02562 * 3 2 1 27 27 H 1.09001 * 110.72325 * 336.74849 * 7 5 4 28 28 H 1.08995 * 110.72221 * 100.02882 * 7 5 4 29 29 H 1.08999 * 111.00475 * 277.42695 * 8 7 5 30 30 H 1.09004 * 111.04039 * 153.59266 * 8 7 5 31 31 H 1.08997 * 110.37169 * 204.15164 * 9 8 7 32 32 H 1.08996 * 110.45988 * 81.87112 * 9 8 7 33 33 H 0.97000 * 120.00127 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0022 5 6 4.9211 1.3001 0.0051 6 1 5.4557 1.1247 -0.9285 7 6 5.7881 0.8551 1.2017 8 6 6.4370 2.1831 1.6735 9 6 5.2943 3.1966 1.4154 10 7 4.6570 2.7372 0.1678 11 6 3.9490 3.5070 -0.6823 12 8 3.4657 3.0186 -1.6865 13 6 3.7625 4.9307 -0.3980 14 1 4.1925 5.3643 0.4927 15 6 3.0272 5.7306 -1.2816 16 7 2.5073 5.2060 -2.3595 17 14 2.7885 7.5474 -0.9184 18 1 3.4712 7.8916 0.3546 19 1 3.3670 8.3533 -2.0235 20 1 1.3380 7.8417 -0.7980 21 7 3.4764 -0.7563 -0.0047 22 8 2.3095 -1.0736 -0.0060 23 1 -0.3633 -1.0277 -0.0052 24 1 -0.3633 0.5184 -0.8874 25 1 -0.3633 0.5093 0.8926 26 1 2.0344 2.1271 0.0004 27 1 5.1678 0.4277 1.9896 28 1 6.5510 0.1452 0.8823 29 1 7.3151 2.4234 1.0742 30 1 6.6895 2.1405 2.7330 31 1 5.6993 4.2004 1.2872 32 1 4.5773 3.1796 2.2361 33 1 1.9978 5.7600 -2.9713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772062457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:24 Heat of formation + Delta-G solvation = 24.906354 kcal Electronic energy + Delta-G solvation = -18724.486276 eV Core-core repulsion = 15753.597282 eV Total energy + Delta-G solvation = -2970.888994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.25611 -38.71113 -35.75342 -33.48150 -32.73805 -32.54642 -30.45389 -28.43209 -27.28919 -26.17733 -23.30980 -22.13545 -21.08281 -20.07428 -18.57099 -17.03789 -16.84962 -16.25609 -15.74956 -15.36395 -14.35643 -13.91546 -13.44122 -13.34782 -13.03120 -12.87783 -12.77391 -12.54776 -12.03432 -11.83889 -11.41019 -11.27815 -11.19986 -10.96649 -10.81329 -10.58812 -10.41580 -10.31756 -10.17054 -9.27631 -8.92284 -8.67426 -7.68610 -7.37305 -6.27420 -4.72548 2.06657 2.97176 3.07527 3.16476 3.20407 3.69665 3.99216 4.32155 4.47031 4.81828 5.05632 5.09145 5.22641 5.36276 5.56120 5.67481 5.72369 5.75501 5.86063 5.95071 5.99676 6.09520 6.17035 6.28200 6.36578 6.42050 6.55821 6.61020 6.85625 7.28041 7.36827 8.02048 8.31767 8.88474 8.94524 9.39709 10.49107 10.67699 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.008514 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.479814 B = 3287.822027 C = 4274.813072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.067 4.067 3 C -0.175 4.175 4 C 0.031 3.969 5 C 0.220 3.780 6 H 0.077 0.923 7 C -0.117 4.117 8 C -0.135 4.135 9 C 0.118 3.882 10 N -0.636 5.636 11 C 0.569 3.431 12 O -0.565 6.565 13 C -0.538 4.538 14 H 0.071 0.929 15 C 0.087 3.913 16 N -0.765 5.765 17 Si 0.907 3.093 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 N -0.381 5.381 22 O 0.083 5.917 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.173 0.827 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -5.168 7.914 9.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.131 4.131 3 C -0.196 4.196 4 C -0.129 4.129 5 C 0.113 3.887 6 H 0.095 0.905 7 C -0.156 4.156 8 C -0.173 4.173 9 C -0.007 4.007 10 N -0.376 5.376 11 C 0.376 3.624 12 O -0.447 6.447 13 C -0.575 4.575 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.394 5.394 17 Si 0.731 3.269 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.201 1.201 21 N -0.089 5.089 22 O 0.019 5.981 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.190 0.810 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.781 -6.370 7.094 9.567 hybrid contribution -0.466 1.737 0.095 1.801 sum 0.315 -4.633 7.189 8.559 Atomic orbital electron populations 1.20188 0.84635 1.03494 1.03830 1.24336 0.96053 0.86386 1.06277 1.22561 0.90993 1.01249 1.04796 1.24050 0.98434 0.89519 1.00895 1.19374 0.87865 0.83023 0.98415 0.90536 1.22573 0.98413 0.97577 0.96988 1.22826 0.98445 0.95028 1.00987 1.21926 0.93099 0.97870 0.87784 1.48861 1.58446 1.05467 1.24825 1.18081 0.76875 0.86367 0.81119 1.90654 1.51867 1.74535 1.27645 1.20928 1.35497 0.91769 1.09265 0.91121 1.25717 0.93722 0.99855 0.93959 1.70025 1.24640 1.36119 1.08624 0.86325 0.78526 0.82789 0.79241 1.18712 1.20130 1.20126 1.73659 0.97027 1.16373 1.21805 1.84693 1.11373 1.33288 1.68794 0.90672 0.89535 0.89845 0.80991 0.91188 0.90604 0.90893 0.90759 0.90771 0.93395 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.45 36.01 0.38 -0.45 16 2 C -0.07 -1.23 7.49 -35.30 -0.26 -1.50 16 3 C -0.17 -3.81 9.11 -39.38 -0.36 -4.17 16 4 C 0.03 0.66 6.10 -82.09 -0.50 0.16 16 5 C 0.22 4.54 3.40 -68.10 -0.23 4.31 16 6 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 7 C -0.12 -1.85 6.47 -24.90 -0.16 -2.01 16 8 C -0.13 -1.92 7.08 -24.59 -0.17 -2.09 16 9 C 0.12 2.11 6.52 -2.53 -0.02 2.10 16 10 N -0.64 -14.37 2.87 -165.97 -0.48 -14.84 16 11 C 0.57 15.63 6.15 -12.99 -0.08 15.55 16 12 O -0.57 -17.59 13.53 5.20 0.07 -17.51 16 13 C -0.54 -14.60 8.98 -35.63 -0.32 -14.92 16 14 H 0.07 1.77 6.64 -52.49 -0.35 1.43 16 15 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 16 N -0.77 -22.12 11.83 55.55 0.66 -21.46 16 17 Si 0.91 19.52 29.56 -169.99 -5.02 14.49 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 21 N -0.38 -7.83 12.07 33.43 0.40 -7.42 16 22 O 0.08 1.58 11.20 17.18 0.19 1.77 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.17 4.22 6.39 -52.49 -0.34 3.88 16 27 H 0.07 1.10 7.84 -51.93 -0.41 0.69 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.34 7.14 -51.93 -0.37 0.96 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.27 7.05 8.29 -40.82 -0.34 6.72 16 LS Contribution 281.08 15.07 4.24 4.24 Total: -1.00 -33.15 281.08 -5.75 -38.89 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.98 Total: 2.63 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.83 Total: -0.78 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.58 Total: -43.73 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.26 Total: -15.74 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.15 -5.75 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772062457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.800 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds