Wall clock time and date at job start Mon Mar 30 2020 18:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35451 * 126.77327 * 2 1 4 4 C 1.41387 * 103.98131 * 179.90916 * 3 2 1 5 5 C 1.50708 * 126.79999 * 180.09565 * 4 3 2 6 6 H 1.09001 * 109.86629 * 245.73182 * 5 4 3 7 7 C 1.54318 * 109.87927 * 124.55597 * 5 4 3 8 8 C 1.55155 * 102.93849 * 218.38804 * 7 5 4 9 9 C 1.54906 * 101.58678 * 35.50410 * 8 7 5 10 10 N 1.47026 * 109.88022 * 6.74436 * 5 4 3 11 11 C 1.34773 * 125.64913 * 298.39608 * 10 5 4 12 12 O 1.21685 * 120.00350 * 359.97438 * 11 10 5 13 13 C 1.46374 * 119.99576 * 180.02562 * 11 10 5 14 14 H 1.07996 * 120.00094 * 0.02562 * 13 11 10 15 15 C 1.40048 * 119.99670 * 179.97438 * 13 11 10 16 16 N 1.30672 * 120.00191 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99803 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47050 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46969 * 120.00630 * 17 15 13 20 20 H 1.48500 * 109.47104 * 240.00549 * 17 15 13 21 21 N 1.30172 * 106.39748 * 0.36162 * 4 3 2 22 22 O 1.20927 * 111.60264 * 359.76701 * 21 4 3 23 23 H 1.09002 * 109.47152 * 179.70748 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.70848 * 1 2 3 25 25 H 1.09004 * 109.47113 * 299.70829 * 1 2 3 26 26 H 1.07997 * 128.00919 * 0.02562 * 3 2 1 27 27 H 1.09001 * 110.72325 * 336.74849 * 7 5 4 28 28 H 1.08995 * 110.72221 * 100.02882 * 7 5 4 29 29 H 1.08999 * 111.00475 * 277.42695 * 8 7 5 30 30 H 1.09004 * 111.04039 * 153.59266 * 8 7 5 31 31 H 1.08997 * 110.37169 * 204.15164 * 9 8 7 32 32 H 1.08996 * 110.45988 * 81.87112 * 9 8 7 33 33 H 0.97000 * 120.00127 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0022 5 6 4.9211 1.3001 0.0051 6 1 5.4557 1.1247 -0.9285 7 6 5.7881 0.8551 1.2017 8 6 6.4370 2.1831 1.6735 9 6 5.2943 3.1966 1.4154 10 7 4.6570 2.7372 0.1678 11 6 3.9490 3.5070 -0.6823 12 8 3.4657 3.0186 -1.6865 13 6 3.7625 4.9307 -0.3980 14 1 4.1925 5.3643 0.4927 15 6 3.0272 5.7306 -1.2816 16 7 2.5073 5.2060 -2.3595 17 14 2.7885 7.5474 -0.9184 18 1 3.4712 7.8916 0.3546 19 1 3.3670 8.3533 -2.0235 20 1 1.3380 7.8417 -0.7980 21 7 3.4764 -0.7563 -0.0047 22 8 2.3095 -1.0736 -0.0060 23 1 -0.3633 -1.0277 -0.0052 24 1 -0.3633 0.5184 -0.8874 25 1 -0.3633 0.5093 0.8926 26 1 2.0344 2.1271 0.0004 27 1 5.1678 0.4277 1.9896 28 1 6.5510 0.1452 0.8823 29 1 7.3151 2.4234 1.0742 30 1 6.6895 2.1405 2.7330 31 1 5.6993 4.2004 1.2872 32 1 4.5773 3.1796 2.2361 33 1 1.9978 5.7600 -2.9713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772062457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:23 Heat of formation + Delta-G solvation = 2.482640 kcal Electronic energy + Delta-G solvation = -18725.458642 eV Core-core repulsion = 15753.597282 eV Total energy + Delta-G solvation = -2971.861359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.85804 -40.40150 -37.68054 -35.05545 -34.60713 -34.19054 -32.11971 -29.97390 -28.62228 -28.15974 -24.92794 -23.83650 -22.46131 -21.75692 -20.25809 -18.68896 -18.54869 -17.96136 -17.63252 -16.96269 -16.13679 -15.58445 -15.21661 -14.74239 -14.48984 -14.30759 -14.04220 -14.00777 -13.68425 -13.26074 -13.17208 -13.03334 -12.72516 -12.67651 -12.51982 -12.09567 -11.94173 -11.91886 -11.68464 -10.97842 -10.85287 -10.20835 -9.81424 -9.21843 -8.30044 -6.85354 0.52287 1.30764 1.38495 1.39552 1.56514 2.20589 2.23528 2.43296 2.66068 3.22051 3.57150 3.66376 3.74522 3.90672 4.10324 4.23605 4.33145 4.49521 4.52130 4.65799 4.67755 4.85552 4.87307 4.96101 4.97856 5.04711 5.09515 5.22474 5.32205 5.34494 5.60653 6.02690 6.36393 6.86737 7.30165 7.46635 8.46160 8.66118 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.008514 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.479814 B = 3287.822027 C = 4274.813072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.039 4.039 3 C -0.219 4.219 4 C 0.016 3.984 5 C 0.210 3.790 6 H 0.052 0.948 7 C -0.104 4.104 8 C -0.116 4.116 9 C 0.107 3.893 10 N -0.641 5.641 11 C 0.558 3.442 12 O -0.616 6.616 13 C -0.562 4.562 14 H 0.086 0.914 15 C 0.032 3.968 16 N -0.818 5.818 17 Si 0.992 3.008 18 H -0.247 1.247 19 H -0.271 1.271 20 H -0.268 1.268 21 N -0.387 5.387 22 O 0.091 5.909 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.139 0.861 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 -5.029 9.994 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C -0.241 4.241 4 C -0.144 4.144 5 C 0.104 3.896 6 H 0.070 0.930 7 C -0.143 4.143 8 C -0.154 4.154 9 C -0.015 4.015 10 N -0.379 5.379 11 C 0.364 3.636 12 O -0.502 6.502 13 C -0.599 4.599 14 H 0.104 0.896 15 C -0.183 4.183 16 N -0.447 5.447 17 Si 0.812 3.188 18 H -0.170 1.170 19 H -0.196 1.196 20 H -0.193 1.193 21 N -0.095 5.095 22 O 0.027 5.973 23 H 0.128 0.872 24 H 0.106 0.894 25 H 0.123 0.877 26 H 0.156 0.844 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.024 -6.256 9.230 11.197 hybrid contribution -0.567 1.604 -0.558 1.791 sum 0.457 -4.652 8.671 9.851 Atomic orbital electron populations 1.20480 0.80636 1.06128 1.04845 1.25071 0.97918 0.84857 1.02419 1.22332 0.92362 1.00651 1.08725 1.24214 0.98798 0.90049 1.01293 1.19599 0.88323 0.82058 0.99651 0.93045 1.22559 0.98066 0.98837 0.94814 1.22806 0.96792 0.92166 1.03615 1.22213 0.94449 0.99036 0.85843 1.48655 1.57439 1.06352 1.25475 1.18334 0.76907 0.87181 0.81140 1.90595 1.53952 1.75605 1.30001 1.21391 1.36108 0.92223 1.10143 0.89574 1.26898 0.92646 1.05524 0.93228 1.70192 1.25765 1.38617 1.10140 0.85041 0.78815 0.75292 0.79641 1.16989 1.19556 1.19300 1.73624 0.97761 1.15625 1.22463 1.84669 1.11143 1.33275 1.68211 0.87208 0.89416 0.87690 0.84361 0.90752 0.88354 0.90035 0.86682 0.90972 0.92735 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.53 10.45 71.24 0.74 -0.79 16 2 C -0.04 -1.41 7.49 25.04 0.19 -1.23 16 3 C -0.22 -9.91 9.11 22.40 0.20 -9.71 16 4 C 0.02 0.69 6.10 43.58 0.27 0.95 16 5 C 0.21 8.87 3.40 44.59 0.15 9.02 16 6 H 0.05 2.38 8.14 -2.39 -0.02 2.37 16 7 C -0.10 -3.12 6.47 31.78 0.21 -2.91 16 8 C -0.12 -2.98 7.08 31.98 0.23 -2.75 16 9 C 0.11 3.78 6.52 86.85 0.57 4.34 16 10 N -0.64 -29.78 2.87 -797.22 -2.29 -32.07 16 11 C 0.56 32.06 6.15 86.36 0.53 32.59 16 12 O -0.62 -40.64 13.53 -4.30 -0.06 -40.70 16 13 C -0.56 -31.30 8.98 24.83 0.22 -31.08 16 14 H 0.09 4.35 6.64 -2.91 -0.02 4.33 16 15 C 0.03 1.77 5.50 85.30 0.47 2.24 16 16 N -0.82 -49.10 11.83 21.84 0.26 -48.85 16 17 Si 0.99 40.22 29.56 68.60 2.03 42.25 16 18 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 21 N -0.39 -15.89 12.07 -49.55 -0.60 -16.49 16 22 O 0.09 3.40 11.20 71.66 0.80 4.20 16 23 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.14 7.28 6.39 -2.91 -0.02 7.26 16 27 H 0.07 2.18 7.84 -2.39 -0.02 2.16 16 28 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.07 2.54 7.14 -2.39 -0.02 2.52 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.27 14.90 8.29 -92.71 -0.77 14.13 16 Total: -1.00 -76.94 281.08 5.04 -71.90 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.12 Total: 19.07 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 3.78 Total: 0.68 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -2.63 Total: -97.40 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: 0.74 Total: -36.49 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -76.94 5.04 -71.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772062457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.380 kcal (2) G-P(sol) polarization free energy of solvation -76.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds