Wall clock time and date at job start Mon Mar 30 2020 18:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30436 * 125.99510 * 2 1 4 4 N 1.39921 * 108.91805 * 180.26735 * 3 2 1 5 5 H 0.96998 * 125.74461 * 179.68104 * 4 3 2 6 6 C 1.34225 * 108.51797 * 359.70979 * 4 3 2 7 7 C 1.38129 * 107.40462 * 0.02562 * 6 4 3 8 8 C 1.47284 * 126.42777 * 180.02562 * 7 6 4 9 9 O 1.21521 * 120.00040 * 180.02562 * 8 7 6 10 10 O 1.34755 * 119.99814 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99992 * 182.99158 * 10 8 7 12 12 C 1.50695 * 112.84856 * 294.89038 * 11 10 8 13 13 H 1.08003 * 120.00593 * 118.52340 * 12 11 10 14 14 C 1.37880 * 120.00045 * 298.51945 * 12 11 10 15 15 N 1.31518 * 119.99916 * 1.78609 * 14 12 11 16 16 Si 1.86800 * 120.00359 * 181.78500 * 14 12 11 17 17 H 1.48496 * 109.47325 * 270.00193 * 16 14 12 18 18 H 1.48504 * 109.46959 * 30.00190 * 16 14 12 19 19 H 1.48501 * 109.47498 * 149.99785 * 16 14 12 20 20 C 1.53780 * 113.61041 * 66.08286 * 11 10 8 21 21 C 1.53955 * 87.02008 * 89.23020 * 20 11 10 22 22 C 1.53777 * 113.61465 * 163.69306 * 11 10 8 23 23 H 1.09008 * 109.46748 * 270.21752 * 1 2 3 24 24 H 1.08997 * 109.47303 * 30.20736 * 1 2 3 25 25 H 1.08993 * 109.47182 * 150.21560 * 1 2 3 26 26 H 1.07999 * 126.30118 * 179.97438 * 6 4 3 27 27 H 0.97000 * 119.99606 * 355.06278 * 15 14 12 28 28 H 1.08997 * 113.61116 * 203.74755 * 20 11 10 29 29 H 1.08998 * 113.61943 * 334.65195 * 20 11 10 30 30 H 1.08998 * 113.53694 * 270.81336 * 21 20 11 31 31 H 1.08999 * 113.74561 * 139.93717 * 21 20 11 32 32 H 1.09005 * 113.61669 * 25.34353 * 22 11 10 33 33 H 1.08996 * 113.61358 * 156.17048 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6111 0.6444 -0.0062 5 1 4.3839 1.2306 -0.0119 6 6 3.6449 -0.6974 -0.0035 7 6 2.3377 -1.1436 0.0037 8 6 1.8928 -2.5476 0.0093 9 8 0.7060 -2.8089 0.0150 10 8 2.8018 -3.5424 0.0081 11 6 2.2924 -4.9008 -0.0537 12 6 1.4970 -5.2835 1.1676 13 1 0.4555 -5.5527 1.0714 14 6 2.0988 -5.2902 2.4081 15 7 3.3574 -4.9286 2.5304 16 14 1.1266 -5.8126 3.9152 17 1 0.4684 -4.6247 4.5160 18 1 0.0938 -6.8033 3.5191 19 1 2.0447 -6.4252 4.9088 20 6 1.5859 -5.2340 -1.3783 21 6 2.9629 -5.6717 -1.9097 22 6 3.3554 -5.9400 -0.4472 23 1 -0.3633 0.0039 1.0278 24 1 -0.3634 0.8881 -0.5170 25 1 -0.3633 -0.8919 -0.5104 26 1 4.5311 -1.3147 -0.0073 27 1 3.8827 -4.7263 1.7404 28 1 0.8693 -6.0513 -1.2973 29 1 1.1779 -4.3608 -1.8874 30 1 3.5283 -4.8626 -2.3721 31 1 2.9304 -6.5709 -2.5250 32 1 4.3739 -5.6358 -0.2056 33 1 3.1241 -6.9503 -0.1099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856020.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:35 Heat of formation + Delta-G solvation = 2.516555 kcal Electronic energy + Delta-G solvation = -18795.831188 eV Core-core repulsion = 15823.971299 eV Total energy + Delta-G solvation = -2971.859889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09708 -39.23757 -36.89525 -34.16004 -32.70960 -32.35429 -30.13964 -27.76955 -25.98709 -24.72827 -23.45983 -22.26773 -20.65808 -19.40212 -18.38336 -17.78811 -17.21998 -15.61240 -15.11239 -15.06207 -14.46132 -14.08099 -13.72290 -13.61816 -13.26422 -12.69150 -12.56263 -12.29483 -12.12499 -11.71456 -11.39063 -10.81542 -10.73578 -10.50400 -10.36361 -10.16143 -10.07894 -9.99176 -9.36958 -9.29829 -8.95460 -8.53817 -8.42253 -8.09943 -6.35130 -4.12382 1.79049 2.42612 2.84740 3.45968 3.47349 3.63988 3.93431 4.11648 4.53269 4.78409 4.97017 5.33738 5.39805 5.57198 5.62579 5.73689 5.79409 5.94118 5.98727 6.12589 6.25184 6.32292 6.39491 6.69243 6.71576 6.72748 6.88229 7.10558 7.24721 7.39854 7.70449 7.79336 8.20601 8.47025 8.86076 9.16317 9.63585 11.03060 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.008684 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.967093 B = 3223.508662 C = 3747.711733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.133 3.867 3 N -0.310 5.310 4 N -0.469 5.469 5 H 0.441 0.559 6 C 0.123 3.877 7 C -0.263 4.263 8 C 0.541 3.459 9 O -0.503 6.503 10 O -0.354 6.354 11 C 0.216 3.784 12 C -0.591 4.591 13 H 0.059 0.941 14 C 0.032 3.968 15 N -0.895 5.895 16 Si 1.066 2.934 17 H -0.287 1.287 18 H -0.287 1.287 19 H -0.285 1.285 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.110 4.110 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.192 0.808 27 H 0.278 0.722 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.804 6.664 -6.131 9.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.134 5.134 4 N -0.174 5.174 5 H 0.285 0.715 6 C -0.029 4.029 7 C -0.276 4.276 8 C 0.384 3.616 9 O -0.392 6.392 10 O -0.271 6.271 11 C 0.182 3.818 12 C -0.628 4.628 13 H 0.077 0.923 14 C -0.176 4.176 15 N -0.531 5.531 16 Si 0.895 3.105 17 H -0.214 1.214 18 H -0.213 1.213 19 H -0.210 1.210 20 C -0.182 4.182 21 C -0.187 4.187 22 C -0.148 4.148 23 H 0.099 0.901 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.208 0.792 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.568 7.627 -4.493 8.990 hybrid contribution 0.435 -0.402 -1.553 1.662 sum 2.003 7.225 -6.045 9.631 Atomic orbital electron populations 1.20352 0.85721 1.03832 1.03710 1.22475 0.97347 0.88638 0.94935 1.77057 0.86377 1.22391 1.27556 1.46015 1.07607 1.05583 1.58183 0.71497 1.23325 0.99737 0.84845 0.94948 1.19893 0.92269 0.93007 1.22459 1.19499 0.84591 0.84200 0.73350 1.90706 1.17809 1.84679 1.45996 1.86408 1.40511 1.17535 1.82695 1.20805 0.91610 0.75702 0.93729 1.22054 0.98391 1.49699 0.92664 0.92288 1.25810 0.97164 0.93574 1.01050 1.70668 1.08038 1.40171 1.34194 0.83592 0.75019 0.76644 0.75279 1.21413 1.21266 1.21034 1.23353 0.95829 1.00673 0.98370 1.22989 0.98476 1.00033 0.97153 1.22969 0.98829 0.99397 0.93629 0.90105 0.91300 0.88480 0.79157 0.90977 0.90058 0.92773 0.91326 0.92689 0.92435 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.92 36.01 0.36 -0.86 16 2 C 0.13 2.39 7.27 -82.00 -0.60 1.79 16 3 N -0.31 -5.06 12.63 33.90 0.43 -4.63 16 4 N -0.47 -6.22 7.28 30.86 0.22 -6.00 16 5 H 0.44 3.87 8.96 -182.73 -1.64 2.23 16 6 C 0.12 1.89 11.86 -16.55 -0.20 1.70 16 7 C -0.26 -5.14 6.13 -105.08 -0.64 -5.78 16 8 C 0.54 12.74 7.33 34.41 0.25 13.00 16 9 O -0.50 -12.84 13.08 -19.28 -0.25 -13.09 16 10 O -0.35 -8.66 8.92 -40.64 -0.36 -9.02 16 11 C 0.22 5.36 0.11 -90.96 -0.01 5.35 16 12 C -0.59 -16.58 7.35 -34.44 -0.25 -16.84 16 13 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 14 C 0.03 0.89 5.40 -17.82 -0.10 0.79 16 15 N -0.90 -26.15 13.51 55.43 0.75 -25.40 16 16 Si 1.07 25.52 29.90 -169.99 -5.08 20.44 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.14 -3.18 6.90 -25.83 -0.18 -3.36 16 21 C -0.15 -2.84 8.03 -25.82 -0.21 -3.04 16 22 C -0.11 -2.43 6.67 -25.91 -0.17 -2.61 16 23 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.10 1.66 6.56 -51.93 -0.34 1.32 16 26 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 27 H 0.28 8.02 5.76 -40.82 -0.24 7.79 16 28 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 29 H 0.05 1.20 7.32 -51.93 -0.38 0.82 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.25 7.77 -51.93 -0.40 0.85 16 33 H 0.09 1.95 8.09 -51.93 -0.42 1.53 16 LS Contribution 284.62 15.07 4.29 4.29 Total: -1.00 -33.47 284.62 -6.91 -40.38 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.16 Total: 2.91 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.74 Total: -9.87 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 1.40 Total: -36.03 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.61 Total: -22.11 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.47 -6.91 -40.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856020.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.892 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds