Wall clock time and date at job start Mon Mar 30 2020 18:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47363 * 303.99809 * 3 2 1 5 5 C 1.37101 * 119.99609 * 83.20383 * 4 3 2 6 6 H 1.07995 * 119.99882 * 166.61976 * 5 4 3 7 7 C 1.38949 * 119.99910 * 346.61852 * 5 4 3 8 8 N 1.31411 * 120.00246 * 359.83636 * 7 5 4 9 9 Si 1.86809 * 119.99936 * 179.83048 * 7 5 4 10 10 H 1.48502 * 109.46594 * 90.00080 * 9 7 5 11 11 H 1.48492 * 109.47066 * 210.00112 * 9 7 5 12 12 H 1.48500 * 109.46804 * 330.00426 * 9 7 5 13 13 C 1.34764 * 120.00250 * 263.20764 * 4 3 2 14 14 O 1.21297 * 120.00230 * 185.13846 * 13 4 3 15 15 C 1.50701 * 120.00577 * 5.13818 * 13 4 3 16 16 H 1.09005 * 109.39505 * 25.41119 * 15 13 4 17 17 C 1.53069 * 109.40050 * 265.59324 * 15 13 4 18 18 C 1.53325 * 108.43554 * 190.87777 * 17 15 13 19 19 C 1.52915 * 108.58895 * 67.66435 * 18 17 15 20 20 N 1.45754 * 110.49234 * 309.21689 * 19 18 17 21 21 C 1.33356 * 124.10226 * 19.04786 * 20 19 18 22 22 O 1.21283 * 118.23975 * 177.80169 * 21 20 19 23 23 H 4.40645 * 5.51369 * 179.97438 * 4 1 2 24 24 H 1.08994 * 109.47244 * 64.00343 * 3 2 1 25 25 H 1.09000 * 109.47249 * 184.00321 * 3 2 1 26 26 H 0.96998 * 120.00058 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.67277 * 310.69605 * 17 15 13 28 28 H 1.09001 * 109.67929 * 71.23053 * 17 15 13 29 29 H 1.09002 * 109.67200 * 307.92382 * 18 17 15 30 30 H 1.08998 * 109.75377 * 187.46275 * 18 17 15 31 31 H 1.09007 * 109.30234 * 188.89919 * 19 18 17 32 32 H 1.09008 * 109.13276 * 69.42207 * 19 18 17 33 33 H 0.97001 * 117.94849 * 199.07752 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7715 1.1451 5 6 3.2313 -2.1364 1.0604 6 1 3.7855 -2.6859 1.8070 7 6 2.6163 -2.8129 0.0141 8 7 1.9393 -2.1446 -0.8926 9 14 2.7519 -4.6723 -0.1040 10 1 1.6258 -5.2985 0.6342 11 1 2.6984 -5.0829 -1.5300 12 1 4.0394 -5.1133 0.4902 13 6 3.4892 -0.1400 2.2817 14 8 3.9809 -0.7674 3.1960 15 6 3.2747 1.3455 2.4169 16 1 2.4627 1.6553 1.7591 17 6 4.5573 2.0823 2.0229 18 6 4.4130 3.5552 2.4238 19 6 4.3905 3.6450 3.9501 20 7 3.4116 2.7166 4.5016 21 6 2.9169 1.6706 3.8386 22 8 2.1365 0.9427 4.4149 23 1 -1.0499 0.0000 0.0003 24 1 3.0095 -0.4496 -0.9236 25 1 3.0089 1.0260 0.0717 26 1 1.5096 -2.6169 -1.6228 27 1 5.4082 1.6411 2.5421 28 1 4.7062 2.0096 0.9456 29 1 3.4830 3.9558 2.0202 30 1 5.2562 4.1268 2.0361 31 1 4.1309 4.6611 4.2475 32 1 5.3792 3.3980 4.3371 33 1 3.1001 2.8693 5.4074 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868040361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:03 Heat of formation + Delta-G solvation = 2.784722 kcal Electronic energy + Delta-G solvation = -18805.325496 eV Core-core repulsion = 15833.477236 eV Total energy + Delta-G solvation = -2971.848260 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30636 -38.13619 -36.15742 -35.17810 -32.88255 -31.71542 -31.20113 -29.56715 -26.45908 -25.25168 -23.96904 -22.50235 -20.05776 -18.37275 -17.86737 -17.14185 -16.56711 -16.43198 -15.68933 -14.95369 -14.48063 -14.10303 -13.92007 -13.71016 -13.53319 -13.18653 -12.83511 -12.39981 -12.29734 -11.51465 -11.27106 -11.25306 -11.13540 -11.04303 -10.75331 -10.46131 -10.29890 -9.48503 -9.31765 -9.16797 -8.83788 -8.68120 -8.40782 -7.88909 -6.21898 -3.84695 3.05749 3.17495 3.27378 3.32343 3.43418 3.79580 3.93826 4.17115 4.28291 4.69599 4.75827 4.86809 4.99913 5.09978 5.16333 5.43770 5.53386 5.57152 5.61441 5.78309 5.88657 5.92820 6.03847 6.29717 6.36120 6.99726 7.05681 7.18837 7.56848 7.57813 8.02460 8.44906 8.63071 8.97500 9.15036 9.36557 9.88660 10.71060 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.007278 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.868129 B = 3846.172125 C = 4097.321474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.094 4.094 3 C 0.231 3.769 4 N -0.442 5.442 5 C -0.300 4.300 6 H 0.105 0.895 7 C 0.026 3.974 8 N -0.879 5.879 9 Si 0.933 3.067 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.472 3.528 14 O -0.571 6.571 15 C -0.120 4.120 16 H 0.113 0.887 17 C -0.113 4.113 18 C -0.136 4.136 19 C 0.112 3.888 20 N -0.727 5.727 21 C 0.541 3.459 22 O -0.532 6.532 23 H 0.196 0.804 24 H 0.127 0.873 25 H 0.053 0.947 26 H 0.268 0.732 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 13.060 0.701 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.096 4.096 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.427 4.427 6 H 0.123 0.877 7 C -0.175 4.175 8 N -0.520 5.520 9 Si 0.760 3.240 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.259 3.741 14 O -0.454 6.454 15 C -0.144 4.144 16 H 0.131 0.869 17 C -0.151 4.151 18 C -0.173 4.173 19 C -0.012 4.012 20 N -0.381 5.381 21 C 0.327 3.673 22 O -0.407 6.407 23 H 0.213 0.787 24 H 0.144 0.856 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.848 12.198 1.023 12.832 hybrid contribution -0.552 -0.762 0.050 0.942 sum 3.296 11.436 1.073 11.950 Atomic orbital electron populations 1.24190 0.95355 1.06994 1.03444 1.23046 0.94240 0.94884 0.97468 1.18634 0.84506 0.92893 0.93123 1.43655 1.55591 1.06843 1.09954 1.19774 1.31318 0.80722 1.10913 0.87685 1.25304 0.95550 1.00626 0.96010 1.69892 1.33341 1.34924 1.13822 0.85812 0.78903 0.82106 0.77202 1.20432 1.20893 1.19469 1.19169 0.84908 0.86909 0.83129 1.90550 1.48147 1.67283 1.39391 1.21332 1.00618 0.97656 0.94829 0.86897 1.21639 0.96855 0.93983 1.02665 1.21893 1.03428 0.97305 0.94715 1.21333 0.92456 0.92752 0.94680 1.45383 1.45468 1.28998 1.18277 1.19528 0.80082 0.79456 0.88250 1.90758 1.35175 1.46977 1.67776 0.78710 0.85606 0.92867 0.92067 0.90380 0.90054 0.90831 0.89619 0.90900 0.91901 0.76895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.23 19.25 29.55 0.57 -5.66 16 2 C -0.09 -2.21 10.73 -37.13 -0.40 -2.61 16 3 C 0.23 5.19 4.85 -6.83 -0.03 5.15 16 4 N -0.44 -11.44 2.60 -117.94 -0.31 -11.74 16 5 C -0.30 -8.45 9.47 -14.93 -0.14 -8.60 16 6 H 0.11 3.12 7.22 -52.49 -0.38 2.74 16 7 C 0.03 0.70 5.36 -17.47 -0.09 0.61 16 8 N -0.88 -22.97 8.00 55.50 0.44 -22.53 16 9 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.47 11.92 6.23 -10.99 -0.07 11.85 16 14 O -0.57 -16.65 15.78 -6.41 -0.10 -16.75 16 15 C -0.12 -2.31 1.92 -93.15 -0.18 -2.49 16 16 H 0.11 2.10 6.24 -51.93 -0.32 1.77 16 17 C -0.11 -1.61 5.21 -26.53 -0.14 -1.75 16 18 C -0.14 -1.34 6.02 -26.61 -0.16 -1.50 16 19 C 0.11 1.11 7.16 -4.49 -0.03 1.08 16 20 N -0.73 -10.38 5.45 -61.39 -0.33 -10.71 16 21 C 0.54 10.77 6.90 -11.88 -0.08 10.69 16 22 O -0.53 -13.29 16.92 -6.40 -0.11 -13.40 16 23 H 0.20 3.61 7.80 -54.10 -0.42 3.19 16 24 H 0.13 2.96 6.32 -51.93 -0.33 2.63 16 25 H 0.05 0.97 5.48 -51.93 -0.28 0.69 16 26 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 28 H 0.08 1.05 7.38 -51.93 -0.38 0.66 16 29 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.40 5.03 8.80 -40.82 -0.36 4.67 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -35.60 280.92 -5.68 -41.28 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.73 Total: 6.62 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -0.76 Total: 6.76 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.20 Total: -44.98 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.21 Total: -30.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.60 -5.68 -41.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.064 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds