Wall clock time and date at job start Mon Mar 30 2020 18:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47363 * 303.99809 * 3 2 1 5 5 C 1.37101 * 119.99609 * 83.20383 * 4 3 2 6 6 H 1.07995 * 119.99882 * 166.61976 * 5 4 3 7 7 C 1.38949 * 119.99910 * 346.61852 * 5 4 3 8 8 N 1.31411 * 120.00246 * 359.83636 * 7 5 4 9 9 Si 1.86809 * 119.99936 * 179.83048 * 7 5 4 10 10 H 1.48502 * 109.46594 * 90.00080 * 9 7 5 11 11 H 1.48492 * 109.47066 * 210.00112 * 9 7 5 12 12 H 1.48500 * 109.46804 * 330.00426 * 9 7 5 13 13 C 1.34764 * 120.00250 * 263.20764 * 4 3 2 14 14 O 1.21297 * 120.00230 * 185.13846 * 13 4 3 15 15 C 1.50701 * 120.00577 * 5.13818 * 13 4 3 16 16 H 1.09005 * 109.39505 * 25.41119 * 15 13 4 17 17 C 1.53069 * 109.40050 * 265.59324 * 15 13 4 18 18 C 1.53325 * 108.43554 * 190.87777 * 17 15 13 19 19 C 1.52915 * 108.58895 * 67.66435 * 18 17 15 20 20 N 1.45754 * 110.49234 * 309.21689 * 19 18 17 21 21 C 1.33356 * 124.10226 * 19.04786 * 20 19 18 22 22 O 1.21283 * 118.23975 * 177.80169 * 21 20 19 23 23 H 4.40645 * 5.51369 * 179.97438 * 4 1 2 24 24 H 1.08994 * 109.47244 * 64.00343 * 3 2 1 25 25 H 1.09000 * 109.47249 * 184.00321 * 3 2 1 26 26 H 0.96998 * 120.00058 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.67277 * 310.69605 * 17 15 13 28 28 H 1.09001 * 109.67929 * 71.23053 * 17 15 13 29 29 H 1.09002 * 109.67200 * 307.92382 * 18 17 15 30 30 H 1.08998 * 109.75377 * 187.46275 * 18 17 15 31 31 H 1.09007 * 109.30234 * 188.89919 * 19 18 17 32 32 H 1.09008 * 109.13276 * 69.42207 * 19 18 17 33 33 H 0.97001 * 117.94849 * 199.07752 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7715 1.1451 5 6 3.2313 -2.1364 1.0604 6 1 3.7855 -2.6859 1.8070 7 6 2.6163 -2.8129 0.0141 8 7 1.9393 -2.1446 -0.8926 9 14 2.7519 -4.6723 -0.1040 10 1 1.6258 -5.2985 0.6342 11 1 2.6984 -5.0829 -1.5300 12 1 4.0394 -5.1133 0.4902 13 6 3.4892 -0.1400 2.2817 14 8 3.9809 -0.7674 3.1960 15 6 3.2747 1.3455 2.4169 16 1 2.4627 1.6553 1.7591 17 6 4.5573 2.0823 2.0229 18 6 4.4130 3.5552 2.4238 19 6 4.3905 3.6450 3.9501 20 7 3.4116 2.7166 4.5016 21 6 2.9169 1.6706 3.8386 22 8 2.1365 0.9427 4.4149 23 1 -1.0499 0.0000 0.0003 24 1 3.0095 -0.4496 -0.9236 25 1 3.0089 1.0260 0.0717 26 1 1.5096 -2.6169 -1.6228 27 1 5.4082 1.6411 2.5421 28 1 4.7062 2.0096 0.9456 29 1 3.4830 3.9558 2.0202 30 1 5.2562 4.1268 2.0361 31 1 4.1309 4.6611 4.2475 32 1 5.3792 3.3980 4.3371 33 1 3.1001 2.8693 5.4074 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868040361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:03 Heat of formation + Delta-G solvation = -23.332060 kcal Electronic energy + Delta-G solvation = -18806.458005 eV Core-core repulsion = 15833.477236 eV Total energy + Delta-G solvation = -2972.980769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82856 -39.92383 -37.46934 -37.15991 -34.38630 -33.48038 -33.08148 -30.84017 -28.31519 -26.87727 -25.47275 -23.75519 -21.60907 -19.85286 -19.68307 -18.68582 -18.30021 -18.05973 -17.15696 -16.64495 -16.04397 -15.72815 -15.62867 -15.13981 -14.86757 -14.59952 -14.39002 -14.14351 -13.97112 -13.19268 -12.95992 -12.85435 -12.50252 -12.40421 -12.21942 -12.13676 -11.89300 -11.43613 -11.00973 -10.81213 -10.56314 -10.34469 -10.02632 -9.89501 -8.23958 -5.95852 1.33003 1.37977 1.48366 1.55398 1.79369 2.11689 2.30377 2.38678 2.47080 3.06789 3.14712 3.54375 3.81359 3.85873 3.88798 3.98243 4.24851 4.26662 4.60498 4.64443 4.76920 4.84945 5.04258 5.10377 5.17298 5.34258 5.42430 5.46738 5.90823 5.99315 6.28950 6.43103 7.10282 7.19238 7.23107 7.38193 7.91491 8.64938 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.007278 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.868129 B = 3846.172125 C = 4097.321474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.132 4.132 3 C 0.233 3.767 4 N -0.452 5.452 5 C -0.344 4.344 6 H 0.073 0.927 7 C 0.000 4.000 8 N -0.878 5.878 9 Si 0.990 3.010 10 H -0.283 1.283 11 H -0.263 1.263 12 H -0.273 1.273 13 C 0.458 3.542 14 O -0.626 6.626 15 C -0.112 4.112 16 H 0.120 0.880 17 C -0.111 4.111 18 C -0.127 4.127 19 C 0.100 3.900 20 N -0.709 5.709 21 C 0.532 3.468 22 O -0.600 6.600 23 H 0.227 0.773 24 H 0.113 0.887 25 H 0.096 0.904 26 H 0.272 0.728 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 15.437 -0.375 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.134 4.134 3 C 0.111 3.889 4 N -0.170 5.170 5 C -0.471 4.471 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.517 5.517 9 Si 0.814 3.186 10 H -0.210 1.210 11 H -0.187 1.187 12 H -0.198 1.198 13 C 0.247 3.753 14 O -0.512 6.512 15 C -0.136 4.136 16 H 0.138 0.862 17 C -0.149 4.149 18 C -0.164 4.164 19 C -0.022 4.022 20 N -0.360 5.360 21 C 0.318 3.682 22 O -0.481 6.481 23 H 0.244 0.756 24 H 0.131 0.869 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.100 14.668 -0.093 15.230 hybrid contribution -0.626 -1.451 0.384 1.626 sum 3.474 13.217 0.292 13.669 Atomic orbital electron populations 1.25050 0.96414 1.05679 1.02075 1.23479 0.95099 0.96083 0.98713 1.18708 0.84396 0.94500 0.91276 1.43858 1.55428 1.06476 1.11236 1.19657 1.33437 0.82425 1.11594 0.90883 1.25958 0.94688 1.04304 0.95161 1.70030 1.32272 1.36007 1.13396 0.84988 0.78308 0.77337 0.77990 1.20974 1.18678 1.19752 1.20191 0.83478 0.89467 0.82136 1.90493 1.50382 1.69260 1.41092 1.21268 1.03568 0.93652 0.95150 0.86186 1.21724 0.93239 0.96416 1.03509 1.21956 1.05829 0.94033 0.94613 1.21823 0.91845 0.93671 0.94882 1.45362 1.44703 1.27650 1.18284 1.19733 0.79711 0.80159 0.88574 1.90720 1.38437 1.49744 1.69189 0.75648 0.86949 0.88637 0.91691 0.91851 0.88528 0.89744 0.85505 0.86461 0.90600 0.75948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.77 19.25 74.32 1.43 -10.34 16 2 C -0.13 -6.12 10.73 31.12 0.33 -5.78 16 3 C 0.23 10.44 4.85 84.57 0.41 10.85 16 4 N -0.45 -24.15 2.60 -645.44 -1.68 -25.83 16 5 C -0.34 -20.21 9.47 84.04 0.80 -19.42 16 6 H 0.07 4.65 7.22 -2.91 -0.02 4.63 16 7 C 0.00 0.01 5.36 84.93 0.46 0.47 16 8 N -0.88 -45.72 8.00 21.66 0.17 -45.54 16 9 Si 0.99 44.00 29.55 68.60 2.03 46.03 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 C 0.46 24.02 6.23 87.66 0.55 24.56 16 14 O -0.63 -38.65 15.78 8.35 0.13 -38.52 16 15 C -0.11 -4.30 1.92 -12.43 -0.02 -4.33 16 16 H 0.12 4.36 6.24 -2.38 -0.01 4.34 16 17 C -0.11 -2.91 5.21 30.73 0.16 -2.75 16 18 C -0.13 -1.92 6.02 30.67 0.18 -1.74 16 19 C 0.10 1.54 7.16 86.49 0.62 2.16 16 20 N -0.71 -18.90 5.45 -467.31 -2.55 -21.45 16 21 C 0.53 21.26 6.90 87.71 0.61 21.86 16 22 O -0.60 -31.21 16.92 8.39 0.14 -31.07 16 23 H 0.23 7.83 7.80 -4.42 -0.03 7.79 16 24 H 0.11 5.30 6.32 -2.39 -0.02 5.29 16 25 H 0.10 3.35 5.48 -2.39 -0.01 3.34 16 26 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 27 H 0.06 1.86 8.09 -2.38 -0.02 1.84 16 28 H 0.10 2.22 7.38 -2.39 -0.02 2.20 16 29 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 30 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.40 9.65 8.80 -92.71 -0.82 8.83 16 Total: -1.00 -83.47 280.92 4.09 -79.38 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.32 Total: 21.45 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.52 Total: 15.55 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -4.05 Total: -92.82 kcal Atomic # 8 Polarization: -69.86 SS G_CDS: 0.27 Total: -69.59 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -83.47 4.09 -79.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.048 kcal (2) G-P(sol) polarization free energy of solvation -83.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds