Wall clock time and date at job start Mon Mar 30 2020 18:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35916 * 116.99831 * 2 1 4 4 C 1.38794 * 120.43395 * 359.97438 * 3 2 1 5 5 N 1.31822 * 120.83166 * 179.97438 * 4 3 2 6 6 C 1.31800 * 121.85352 * 0.02562 * 5 4 3 7 7 C 1.38892 * 120.78270 * 0.25280 * 6 5 4 8 8 N 1.39952 * 120.45133 * 179.74165 * 7 6 5 9 9 C 1.34783 * 119.99162 * 212.67821 * 8 7 6 10 10 O 1.21282 * 120.00323 * 5.13625 * 9 8 7 11 11 C 1.50701 * 119.99477 * 185.12429 * 9 8 7 12 12 H 1.09002 * 109.46887 * 60.00887 * 11 9 8 13 13 C 1.52997 * 109.47509 * 300.00671 * 11 9 8 14 14 C 1.50703 * 109.47058 * 180.02562 * 11 9 8 15 15 H 1.07995 * 119.99533 * 5.45493 * 14 11 9 16 16 C 1.37878 * 120.00025 * 185.45167 * 14 11 9 17 17 N 1.31512 * 119.99925 * 6.86857 * 16 14 11 18 18 Si 1.86798 * 119.99953 * 186.87526 * 16 14 11 19 19 H 1.48493 * 109.47323 * 94.98391 * 18 16 14 20 20 H 1.48492 * 109.47018 * 214.98835 * 18 16 14 21 21 H 1.48500 * 109.47055 * 334.98448 * 18 16 14 22 22 C 1.38963 * 120.43603 * 179.97438 * 3 2 1 23 23 H 1.09005 * 109.46898 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47319 * 299.99471 * 1 2 3 25 25 H 1.09004 * 109.47354 * 60.00437 * 1 2 3 26 26 H 1.07998 * 119.58415 * 359.95859 * 4 3 2 27 27 H 1.08003 * 119.61304 * 179.97438 * 6 5 4 28 28 H 0.96991 * 120.00264 * 32.69179 * 8 7 6 29 29 H 1.09003 * 109.47253 * 294.88318 * 13 11 9 30 30 H 1.08998 * 109.47327 * 54.87691 * 13 11 9 31 31 H 1.09000 * 109.47391 * 174.88157 * 13 11 9 32 32 H 0.97005 * 119.99942 * 179.97438 * 17 16 14 33 33 H 1.08004 * 120.84427 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2989 2.3807 -0.0005 5 7 1.8891 3.5594 0.0000 6 6 3.2016 3.6801 0.0005 7 6 4.0187 2.5569 -0.0047 8 7 5.4115 2.6932 -0.0096 9 6 6.1754 1.7821 -0.6445 10 8 5.6539 0.8971 -1.2894 11 6 7.6774 1.8632 -0.5532 12 1 7.9829 1.7819 0.4900 13 6 8.1513 3.2028 -1.1204 14 6 8.2904 0.7375 -1.3457 15 1 7.6612 0.0869 -1.9349 16 6 9.6545 0.5383 -1.3187 17 7 10.4055 1.2412 -0.4993 18 14 10.4357 -0.7299 -2.4460 19 1 10.9142 -0.0639 -3.6839 20 1 11.5828 -1.3687 -1.7525 21 1 9.4310 -1.7653 -2.7977 22 6 3.4331 1.2944 0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2203 2.3245 -0.0016 27 1 3.6471 4.6640 0.0005 28 1 5.8271 3.4430 0.4440 29 1 7.9263 3.2461 -2.1861 30 1 7.6385 4.0164 -0.6075 31 1 9.2268 3.3002 -0.9719 32 1 11.3651 1.1008 -0.4800 33 1 4.0415 0.4020 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869760055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:12 Heat of formation + Delta-G solvation = -63.263295 kcal Electronic energy + Delta-G solvation = -17816.347901 eV Core-core repulsion = 14841.635584 eV Total energy + Delta-G solvation = -2974.712317 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.01339 -40.67608 -39.03017 -36.05135 -35.80406 -33.09994 -32.26980 -30.50901 -28.30687 -27.18940 -25.48589 -24.57422 -23.29137 -21.23993 -19.64115 -18.43662 -18.41130 -17.81655 -17.28296 -17.01498 -16.80874 -16.35363 -15.94320 -15.17274 -14.99004 -14.62426 -14.46121 -14.19161 -13.60118 -13.54606 -12.94349 -12.84785 -12.77852 -12.60226 -12.42894 -12.30496 -12.06835 -11.91985 -11.09842 -10.98905 -10.55724 -10.35257 -9.85332 -9.23216 -8.21009 -6.27245 -0.02366 0.19741 1.39596 1.41372 1.52567 1.73695 1.94343 2.32895 2.46688 2.75786 3.12480 3.56128 3.63711 3.87257 4.00450 4.10233 4.32608 4.40281 4.43071 4.72024 4.74394 4.84702 4.87455 4.92366 5.00276 5.14558 5.45239 5.62868 5.72219 5.82712 6.10334 6.22692 6.52617 6.80930 6.84374 7.25174 7.41542 8.88229 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.033616 B = 0.005145 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.748387 B = 5440.717686 C = 6114.529983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.097 3.903 4 C -0.004 4.004 5 N -0.438 5.438 6 C 0.039 3.961 7 C 0.140 3.860 8 N -0.662 5.662 9 C 0.523 3.477 10 O -0.558 6.558 11 C 0.027 3.973 12 H 0.054 0.946 13 C -0.117 4.117 14 C -0.532 4.532 15 H 0.048 0.952 16 C 0.025 3.975 17 N -0.910 5.910 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.281 1.281 22 C -0.151 4.151 23 H 0.120 0.880 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.192 0.808 27 H 0.191 0.809 28 H 0.429 0.571 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.266 0.734 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 4.885 3.585 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.246 6.246 3 C 0.049 3.951 4 C -0.162 4.162 5 N -0.147 5.147 6 C -0.122 4.122 7 C 0.042 3.958 8 N -0.310 5.310 9 C 0.314 3.686 10 O -0.434 6.434 11 C 0.006 3.994 12 H 0.071 0.929 13 C -0.175 4.175 14 C -0.570 4.570 15 H 0.067 0.933 16 C -0.175 4.175 17 N -0.549 5.549 18 Si 0.778 3.222 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.206 1.206 22 C -0.180 4.180 23 H 0.139 0.861 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.209 0.791 27 H 0.208 0.792 28 H 0.269 0.731 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.997 4.793 3.187 17.945 hybrid contribution 1.326 -1.337 -0.364 1.918 sum -15.671 3.456 2.823 16.294 Atomic orbital electron populations 1.23497 0.75398 1.06144 1.03038 1.86098 1.24379 1.25896 1.88218 1.19901 0.91787 0.86742 0.96716 1.23224 1.01722 0.86102 1.05199 1.67546 1.11113 1.26527 1.09494 1.22854 0.88411 0.98132 1.02784 1.18823 0.84956 0.93983 0.98023 1.43683 1.03214 1.29637 1.54422 1.21956 0.91376 0.79419 0.75844 1.90559 1.75571 1.36015 1.41281 1.18860 0.84607 0.96956 0.99013 0.92866 1.21560 1.02360 0.94637 0.98984 1.21229 0.92449 1.14309 1.29016 0.93326 1.25534 0.97435 0.98017 0.96536 1.69991 1.05839 1.42314 1.36727 0.85637 0.77867 0.79325 0.79414 1.19704 1.20157 1.20591 1.20896 0.93184 0.98349 1.05566 0.86141 0.90514 0.91055 0.79150 0.79234 0.73061 0.95096 0.91847 0.92322 0.92500 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.82 113.37 1.11 1.30 16 2 O -0.33 -9.07 10.51 -92.61 -0.97 -10.04 16 3 C 0.10 2.89 6.71 22.58 0.15 3.04 16 4 C 0.00 -0.09 10.22 84.83 0.87 0.77 16 5 N -0.44 -11.60 10.35 -194.91 -2.02 -13.62 16 6 C 0.04 1.02 11.11 84.85 0.94 1.97 16 7 C 0.14 4.54 6.30 38.23 0.24 4.79 16 8 N -0.66 -22.05 5.26 -303.23 -1.59 -23.65 16 9 C 0.52 23.26 6.91 87.66 0.61 23.86 16 10 O -0.56 -29.11 13.17 -3.04 -0.04 -29.15 16 11 C 0.03 1.30 2.52 -12.29 -0.03 1.26 16 12 H 0.05 2.67 8.11 -2.39 -0.02 2.65 16 13 C -0.12 -4.94 8.91 71.98 0.64 -4.29 16 14 C -0.53 -30.10 8.29 25.60 0.21 -29.89 16 15 H 0.05 2.96 6.78 -2.91 -0.02 2.94 16 16 C 0.02 1.36 5.27 84.66 0.45 1.80 16 17 N -0.91 -50.29 12.07 21.45 0.26 -50.03 16 18 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 C -0.15 -5.46 8.72 22.67 0.20 -5.26 16 23 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.08 0.82 7.68 -2.39 -0.02 0.80 16 25 H 0.07 0.84 7.68 -2.39 -0.02 0.82 16 26 H 0.19 3.13 6.31 -2.91 -0.02 3.11 16 27 H 0.19 3.65 8.06 -2.91 -0.02 3.62 16 28 H 0.43 10.94 8.03 -92.72 -0.74 10.19 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 2.02 7.32 -2.39 -0.02 2.01 16 31 H 0.06 2.72 6.92 -2.39 -0.02 2.70 16 32 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 33 H 0.12 5.17 6.49 -2.91 -0.02 5.15 16 Total: -1.00 -70.32 284.95 3.44 -66.88 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.40 Total: 13.80 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.39 Total: -0.64 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -3.35 Total: -87.30 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.01 Total: -39.19 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.32 3.44 -66.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869760055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.614 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds