Wall clock time and date at job start Mon Mar 30 2020 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.09003 * 110.53123 * 305.69987 * 4 3 2 6 6 N 1.47314 * 110.60288 * 68.52699 * 4 3 2 7 7 C 1.34526 * 106.61631 * 118.52375 * 6 4 3 8 8 O 1.21536 * 123.76685 * 180.02562 * 7 6 4 9 9 N 1.33793 * 112.46200 * 0.02562 * 7 6 4 10 10 C 1.46493 * 124.17752 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47131 * 89.97291 * 10 9 7 12 12 C 1.53001 * 109.47260 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47384 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99481 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99897 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00225 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99730 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46990 * 60.00358 * 17 15 13 19 19 H 1.48506 * 109.46955 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47274 * 300.00110 * 17 15 13 21 21 C 1.35117 * 111.68301 * 0.08515 * 9 7 6 22 22 O 1.21230 * 127.33496 * 179.97438 * 21 9 7 23 23 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 25 25 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 26 26 H 0.96999 * 126.69021 * 298.56739 * 6 4 3 27 27 H 1.08998 * 109.47133 * 209.96928 * 10 9 7 28 28 H 1.08998 * 109.47267 * 329.97191 * 10 9 7 29 29 H 1.08998 * 109.47725 * 299.99848 * 11 10 9 30 30 H 1.09008 * 109.47178 * 59.99826 * 11 10 9 31 31 H 1.09006 * 109.47121 * 300.00093 * 12 11 10 32 32 H 1.08998 * 109.46939 * 60.00022 * 12 11 10 33 33 H 0.96999 * 119.99885 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7228 -2.1164 0.4591 6 7 2.8537 -1.8365 -1.6367 7 6 4.0352 -2.0700 -2.2361 8 8 4.1469 -2.4337 -3.3904 9 7 5.0735 -1.8571 -1.4196 10 6 6.4751 -2.0330 -1.8077 11 6 7.0171 -0.7179 -2.3713 12 6 8.4812 -0.9014 -2.7760 13 6 9.0153 0.3942 -3.3305 14 1 8.3746 1.2617 -3.3881 15 6 10.3217 0.4718 -3.7643 16 7 11.1019 -0.5846 -3.6937 17 14 10.9835 2.0775 -4.4524 18 1 10.8857 3.1374 -3.4168 19 1 12.4045 1.8994 -4.8451 20 1 10.1865 2.4723 -5.6415 21 6 4.6705 -1.4611 -0.1923 22 8 5.3705 -1.1933 0.7606 23 1 -1.0498 -0.0004 0.0001 24 1 3.0090 0.6649 -0.7843 25 1 3.0092 0.3479 0.9672 26 1 1.9739 -1.9254 -2.0354 27 1 7.0602 -2.3227 -0.9348 28 1 6.5468 -2.8110 -2.5677 29 1 6.4322 -0.4281 -3.2441 30 1 6.9454 0.0601 -1.6112 31 1 9.0660 -1.1909 -1.9028 32 1 8.5533 -1.6794 -3.5359 33 1 12.0211 -0.5298 -3.9986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927472137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:57 Heat of formation + Delta-G solvation = -2.901675 kcal Electronic energy + Delta-G solvation = -17650.127821 eV Core-core repulsion = 14678.032980 eV Total energy + Delta-G solvation = -2972.094841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.38397 -38.55429 -36.70088 -35.73546 -34.21831 -33.19283 -31.32379 -30.16205 -27.33670 -25.32057 -23.70781 -22.44769 -20.82652 -20.04841 -18.64042 -18.02376 -16.94135 -16.53137 -16.25157 -15.62902 -15.26273 -14.77524 -14.43539 -14.20405 -13.99092 -13.90585 -13.75326 -13.01608 -12.45443 -12.13742 -11.50222 -11.09434 -10.93835 -10.88569 -10.81792 -10.58203 -10.52887 -10.17051 -9.83012 -9.76521 -9.61654 -9.30460 -9.01193 -8.33671 -5.98882 -4.01279 1.54366 2.21221 2.43495 2.48662 3.01632 3.07706 3.35524 3.39439 3.42275 3.73082 4.12109 4.40630 4.47641 4.57239 5.10487 5.21942 5.36405 5.37365 5.59040 5.62408 5.71714 5.74248 6.00760 6.51213 6.67344 6.73964 7.01048 7.12938 7.21052 7.37365 7.64802 7.78230 7.99336 8.14940 8.41799 9.04290 9.62545 11.12536 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.004454 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.620771 B = 6284.695849 C = 6470.873994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.189 4.189 3 C -0.011 4.011 4 C 0.098 3.902 5 H 0.129 0.871 6 N -0.728 5.728 7 C 0.701 3.299 8 O -0.535 6.535 9 N -0.571 5.571 10 C 0.115 3.885 11 C -0.123 4.123 12 C 0.025 3.975 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.525 3.475 22 O -0.460 6.460 23 H 0.219 0.781 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.438 0.562 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.176 -2.055 8.678 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C -0.049 4.049 4 C -0.011 4.011 5 H 0.146 0.854 6 N -0.393 5.393 7 C 0.401 3.599 8 O -0.408 6.408 9 N -0.316 5.316 10 C -0.005 4.005 11 C -0.162 4.162 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.311 3.689 22 O -0.328 6.328 23 H 0.236 0.764 24 H 0.120 0.880 25 H 0.133 0.867 26 H 0.282 0.718 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.387 -2.197 8.516 21.289 hybrid contribution -0.201 0.846 -0.558 1.033 sum -19.587 -1.352 7.958 21.185 Atomic orbital electron populations 1.24924 0.95883 0.99360 1.00860 1.22652 0.93917 1.01571 1.00762 1.18847 0.85836 0.94721 1.05499 1.22008 0.93864 0.98509 0.86727 0.85402 1.45577 1.08144 1.73075 1.12524 1.15929 0.81035 0.78273 0.84628 1.91032 1.84883 1.50444 1.14435 1.46706 1.09868 1.62126 1.12943 1.22124 0.74932 1.01642 1.01760 1.22012 1.00553 0.93871 0.99746 1.19029 0.87868 0.97569 0.96748 1.21148 0.96447 0.96886 1.41397 0.92749 1.25009 0.97031 0.96462 0.95887 1.69950 1.07087 1.28872 1.47526 0.86637 0.77847 0.83902 0.79493 1.20236 1.21253 1.20228 1.20696 0.89817 0.75800 0.82626 1.90828 1.62013 1.45056 1.34951 0.76404 0.88025 0.86701 0.71840 0.88965 0.88793 0.92565 0.92814 0.96207 0.96138 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 19.25 29.55 0.57 -0.73 16 2 C -0.19 -1.50 13.18 -37.12 -0.49 -1.99 16 3 C -0.01 -0.09 5.47 -29.52 -0.16 -0.25 16 4 C 0.10 0.88 3.62 -68.20 -0.25 0.63 16 5 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 6 N -0.73 -7.29 6.07 -59.19 -0.36 -7.65 16 7 C 0.70 10.29 8.62 -88.02 -0.76 9.53 16 8 O -0.54 -9.93 17.48 5.33 0.09 -9.84 16 9 N -0.57 -8.60 2.61 -120.64 -0.32 -8.91 16 10 C 0.11 2.01 5.71 -4.05 -0.02 1.98 16 11 C -0.12 -2.60 5.48 -26.73 -0.15 -2.75 16 12 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 13 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.52 6.91 7.67 -10.40 -0.08 6.83 16 22 O -0.46 -7.22 17.78 5.60 0.10 -7.12 16 23 H 0.22 0.76 7.80 -54.10 -0.42 0.34 16 24 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.44 3.44 8.96 -40.82 -0.37 3.07 16 27 H 0.09 1.55 8.01 -51.93 -0.42 1.13 16 28 H 0.09 1.65 7.86 -51.93 -0.41 1.24 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -34.16 302.30 -6.21 -40.37 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.11 Total: -2.04 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.89 Total: 0.08 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.06 Total: -42.93 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.19 Total: -16.96 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.16 -6.21 -40.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927472137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.463 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds