Wall clock time and date at job start Mon Mar 30 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.09000 * 110.53653 * 52.16915 * 4 3 2 6 6 N 1.47319 * 110.59761 * 289.17163 * 4 3 2 7 7 C 1.34527 * 106.61838 * 241.47361 * 6 4 3 8 8 O 1.21532 * 123.77057 * 179.97438 * 7 6 4 9 9 N 1.33797 * 112.45935 * 0.02562 * 7 6 4 10 10 C 1.46498 * 124.18038 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47399 * 270.04448 * 10 9 7 12 12 C 1.52991 * 109.47336 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47077 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00333 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99865 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00048 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99945 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47459 * 89.99645 * 17 15 13 19 19 H 1.48508 * 109.46815 * 209.99637 * 17 15 13 20 20 H 1.48500 * 109.46982 * 329.99415 * 17 15 13 21 21 C 1.34771 * 111.64036 * 359.97438 * 9 7 6 22 22 O 1.21239 * 127.15584 * 180.02562 * 21 9 7 23 23 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 25 25 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 26 26 H 0.96995 * 126.69041 * 61.45298 * 6 4 3 27 27 H 1.09007 * 109.46736 * 30.04194 * 10 9 7 28 28 H 1.08992 * 109.47095 * 150.03851 * 10 9 7 29 29 H 1.09007 * 109.46746 * 300.00106 * 11 10 9 30 30 H 1.08997 * 109.47179 * 59.99289 * 11 10 9 31 31 H 1.08998 * 109.47520 * 300.00149 * 12 11 10 32 32 H 1.09004 * 109.47077 * 59.99948 * 12 11 10 33 33 H 0.97001 * 120.00178 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.6940 -1.8352 -1.1517 6 7 2.9028 -2.2800 0.9108 7 6 4.1043 -2.6947 1.3514 8 8 4.2568 -3.4261 2.3099 9 7 5.1128 -2.2109 0.6172 10 6 6.5269 -2.4982 0.8703 11 6 7.0976 -1.4483 1.8256 12 6 8.5742 -1.7487 2.0905 13 6 9.1365 -0.7141 3.0309 14 1 8.5038 0.0782 3.4029 15 6 10.4587 -0.7791 3.4165 16 7 11.2290 -1.7442 2.9640 17 14 11.1555 0.5029 4.5828 18 1 10.9823 0.0435 5.9843 19 1 12.6006 0.6958 4.3002 20 1 10.4377 1.7887 4.3911 21 6 4.6670 -1.4266 -0.3841 22 8 5.3352 -0.8480 -1.2140 23 1 -1.0498 -0.0004 0.0001 24 1 3.0090 0.6649 -0.7843 25 1 3.0092 0.3479 0.9672 26 1 2.0380 -2.5043 1.2885 27 1 6.6220 -3.4873 1.3187 28 1 7.0771 -2.4712 -0.0701 29 1 7.0024 -0.4592 1.3773 30 1 6.5473 -1.4753 2.7661 31 1 8.6691 -2.7377 2.5389 32 1 9.1248 -1.7219 1.1501 33 1 12.1593 -1.7898 3.2350 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927472138.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:58 Heat of formation + Delta-G solvation = -26.212428 kcal Electronic energy + Delta-G solvation = -17649.328078 eV Core-core repulsion = 14676.222407 eV Total energy + Delta-G solvation = -2973.105671 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.51760 -39.73796 -37.74234 -37.13970 -35.63201 -34.52234 -33.08511 -30.88791 -29.10436 -26.43618 -25.39985 -23.56012 -22.53461 -21.38506 -19.31510 -19.06034 -18.48025 -17.89536 -17.59986 -16.66860 -16.60249 -16.34530 -15.76924 -15.68962 -15.30348 -14.84732 -14.47394 -14.43016 -14.02035 -13.65431 -13.32459 -12.90567 -12.70924 -12.56935 -12.15056 -11.73905 -11.60310 -11.58531 -11.38138 -11.20019 -11.08582 -10.76505 -10.56849 -10.46924 -8.21446 -6.32531 0.48683 1.11862 1.39697 1.41284 1.52319 1.82815 1.89931 1.94251 2.14820 2.40644 2.82500 3.11900 3.52354 3.63505 3.86499 3.98294 4.13096 4.28237 4.39325 4.44140 4.59867 4.73907 4.84708 5.00990 5.08332 5.15786 5.46087 5.65136 5.76109 5.80407 6.02245 6.20559 6.30619 6.70611 6.82275 7.04827 7.36297 8.90459 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030888 B = 0.004447 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.295689 B = 6295.049149 C = 6486.074003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.223 4.223 3 C -0.006 4.006 4 C 0.115 3.885 5 H 0.166 0.834 6 N -0.702 5.702 7 C 0.699 3.301 8 O -0.579 6.579 9 N -0.577 5.577 10 C 0.125 3.875 11 C -0.105 4.105 12 C 0.029 3.971 13 C -0.546 4.546 14 H 0.057 0.943 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.523 3.477 22 O -0.488 6.488 23 H 0.247 0.753 24 H 0.124 0.876 25 H 0.093 0.907 26 H 0.451 0.549 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.047 0.953 31 H -0.002 1.002 32 H 0.002 0.998 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.584 2.018 -8.405 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.223 4.223 3 C -0.043 4.043 4 C 0.007 3.993 5 H 0.183 0.817 6 N -0.368 5.368 7 C 0.400 3.600 8 O -0.455 6.455 9 N -0.322 5.322 10 C 0.004 3.996 11 C -0.144 4.144 12 C -0.009 4.009 13 C -0.584 4.584 14 H 0.075 0.925 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.188 1.188 21 C 0.311 3.689 22 O -0.358 6.358 23 H 0.263 0.737 24 H 0.141 0.859 25 H 0.111 0.889 26 H 0.298 0.702 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.860 1.859 -8.356 23.477 hybrid contribution 0.411 0.240 0.853 0.977 sum -21.450 2.099 -7.503 22.821 Atomic orbital electron populations 1.25688 0.96649 0.97538 0.99161 1.22678 0.94081 1.03218 1.02344 1.18741 0.86462 0.93619 1.05494 1.22126 0.90792 0.93739 0.92654 0.81730 1.45455 1.07188 1.51506 1.32611 1.16029 0.82036 0.80168 0.81813 1.91004 1.85029 1.40613 1.28871 1.46565 1.09168 1.46508 1.29960 1.21737 0.76238 1.00359 1.01295 1.21700 0.97301 0.97660 0.97737 1.18902 0.90657 0.95773 0.95569 1.21622 0.96048 1.12307 1.28395 0.92495 1.25965 0.97522 0.98062 0.98157 1.70083 1.07128 1.33932 1.45909 0.85439 0.77522 0.79214 0.78828 1.19812 1.20451 1.18829 1.21265 0.91449 0.76776 0.79446 1.90821 1.65298 1.43188 1.36509 0.73675 0.85852 0.88857 0.70178 0.89167 0.88370 0.92859 0.93430 0.98362 0.97978 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 19.25 74.32 1.43 -0.29 16 2 C -0.22 -2.88 13.22 31.13 0.41 -2.47 16 3 C -0.01 -0.08 5.45 28.79 0.16 0.08 16 4 C 0.12 1.78 3.62 44.37 0.16 1.94 16 5 H 0.17 1.53 8.14 -2.39 -0.02 1.51 16 6 N -0.70 -12.57 6.12 -459.61 -2.81 -15.38 16 7 C 0.70 20.01 8.62 179.44 1.55 21.56 16 8 O -0.58 -21.57 17.48 -3.82 -0.07 -21.63 16 9 N -0.58 -17.17 2.60 -773.13 -2.01 -19.19 16 10 C 0.12 4.45 5.70 86.38 0.49 4.94 16 11 C -0.11 -4.56 5.48 30.59 0.17 -4.39 16 12 C 0.03 1.54 4.97 29.85 0.15 1.69 16 13 C -0.55 -31.92 9.11 25.60 0.23 -31.69 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 17 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 21 C 0.52 13.16 7.65 87.94 0.67 13.83 16 22 O -0.49 -14.98 17.76 -2.90 -0.05 -15.03 16 23 H 0.25 0.67 7.80 -4.43 -0.03 0.64 16 24 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.45 5.88 8.96 -92.71 -0.83 5.05 16 27 H 0.09 3.28 7.86 -2.38 -0.02 3.26 16 28 H 0.10 3.37 8.00 -2.39 -0.02 3.35 16 29 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 33 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -74.84 302.30 3.54 -71.30 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 0.29 Total: 4.08 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.88 Total: 5.73 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -4.54 Total: -91.55 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.12 Total: -36.67 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.84 3.54 -71.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927472138.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.087 kcal (2) G-P(sol) polarization free energy of solvation -74.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds