Wall clock time and date at job start Mon Mar 30 2020 18:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46875 * 2 1 4 4 H 1.08997 * 109.47311 * 55.00249 * 3 2 1 5 5 C 1.50698 * 109.46851 * 175.00304 * 3 2 1 6 6 H 1.07997 * 120.00195 * 120.00307 * 5 3 2 7 7 C 1.37881 * 119.99723 * 299.99884 * 5 3 2 8 8 N 1.31512 * 120.00276 * 0.02562 * 7 5 3 9 9 Si 1.86810 * 119.99630 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47270 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47026 * 120.00120 * 9 7 5 12 12 H 1.48500 * 109.46800 * 239.99924 * 9 7 5 13 13 N 1.46501 * 109.47147 * 294.99936 * 3 2 1 14 14 C 1.34773 * 119.99630 * 85.00312 * 13 3 2 15 15 O 1.21497 * 120.00245 * 359.97438 * 14 13 3 16 16 C 1.48187 * 119.99556 * 179.97438 * 14 13 3 17 17 C 1.36010 * 119.76517 * 179.97438 * 16 14 13 18 18 C 1.41980 * 119.03390 * 180.02562 * 17 16 14 19 19 O 1.22194 * 120.69260 * 180.02562 * 18 17 16 20 20 C 1.41275 * 118.61967 * 359.97438 * 18 17 16 21 21 C 1.35372 * 119.44090 * 0.02562 * 20 18 17 22 22 N 1.34756 * 120.95222 * 0.02562 * 21 20 18 23 23 H 0.96995 * 119.25752 * 180.02562 * 22 21 20 24 24 H 1.09007 * 109.47241 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47295 * 299.99778 * 1 2 3 26 26 H 1.09002 * 109.47611 * 59.99778 * 1 2 3 27 27 H 1.09001 * 109.47295 * 240.00222 * 2 1 3 28 28 H 1.08993 * 109.47423 * 120.00147 * 2 1 3 29 29 H 0.97000 * 119.99803 * 180.02562 * 8 7 5 30 30 H 0.96995 * 119.99901 * 265.00023 * 13 3 2 31 31 H 1.08007 * 120.48740 * 359.97438 * 17 16 14 32 32 H 1.07994 * 120.28131 * 179.72382 * 20 18 17 33 33 H 1.08000 * 119.52464 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8813 1.3816 10 1 6.5987 1.5463 0.1940 11 1 6.3990 1.6167 2.6101 12 1 6.4970 -0.5174 1.4628 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3411 2.6319 -0.4326 16 6 0.0432 3.3274 -2.6329 17 6 -1.1866 3.8975 -2.7441 18 6 -1.5460 4.5281 -3.9643 19 8 -2.6428 5.0503 -4.0972 20 6 -0.6089 4.5403 -5.0214 21 6 0.5990 3.9547 -4.8466 22 7 0.9190 3.3608 -3.6801 23 1 1.7916 2.9490 -3.5814 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0612 2.9497 30 1 2.2718 2.1232 -1.9977 31 1 -1.8801 3.8703 -1.9165 32 1 -0.8558 5.0086 -5.9627 33 1 1.3163 3.9629 -5.6539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:08 Heat of formation + Delta-G solvation = -43.142311 kcal Electronic energy + Delta-G solvation = -18065.736292 eV Core-core repulsion = 15091.896487 eV Total energy + Delta-G solvation = -2973.839806 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.11967 -39.04439 -37.49253 -35.44851 -32.81848 -31.95672 -31.30568 -30.79022 -27.32554 -24.63482 -23.42924 -23.05182 -20.90362 -19.76242 -19.39268 -17.61840 -17.03729 -16.16675 -15.58067 -15.34020 -15.21270 -14.66037 -14.45909 -14.37320 -13.53053 -13.08513 -12.91440 -12.74391 -12.52621 -12.27781 -11.73828 -11.42847 -11.14681 -11.00985 -10.50343 -10.40429 -9.89491 -9.74119 -9.69831 -9.26633 -9.26152 -8.70151 -8.22163 -8.08919 -6.29601 -4.40936 0.85783 1.24054 2.62654 3.12416 3.19426 3.22111 3.22526 3.43850 3.89817 4.19216 4.43562 4.83300 4.93089 5.02616 5.10730 5.39528 5.64777 6.08850 6.22964 6.27644 6.43443 6.47362 6.57366 6.74631 6.84522 6.99822 7.01740 7.16974 7.38707 7.48575 7.67043 7.96592 8.13392 8.24420 8.46751 8.69692 9.26739 10.75633 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.005429 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.527580 B = 5155.923454 C = 5686.348424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.541 4.541 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.878 5.878 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.697 5.697 14 C 0.539 3.461 15 O -0.509 6.509 16 C 0.121 3.879 17 C -0.213 4.213 18 C 0.390 3.610 19 O -0.528 6.528 20 C -0.301 4.301 21 C 0.150 3.850 22 N -0.578 5.578 23 H 0.419 0.581 24 H 0.027 0.973 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.103 0.897 29 H 0.266 0.734 30 H 0.383 0.617 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 2.574 -11.900 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.073 0.927 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.731 3.269 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.346 5.346 14 C 0.321 3.679 15 O -0.385 6.385 16 C 0.010 3.990 17 C -0.239 4.239 18 C 0.282 3.718 19 O -0.415 6.415 20 C -0.327 4.327 21 C 0.020 3.980 22 N -0.188 5.188 23 H 0.256 0.744 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.216 0.784 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.354 2.689 -11.017 11.346 hybrid contribution 1.838 -0.270 -0.284 1.880 sum 1.484 2.419 -11.301 11.652 Atomic orbital electron populations 1.21871 0.98187 0.98541 1.01214 1.21961 0.92704 0.99388 1.02656 1.18976 0.94711 0.89377 0.80101 0.92690 1.21175 0.90229 1.39803 1.06677 0.91979 1.24881 0.98820 0.94540 0.95255 1.69886 1.35271 1.37054 1.09282 0.86369 0.84457 0.77893 0.78227 1.19765 1.20749 1.20767 1.46571 1.13687 1.55336 1.19010 1.17968 0.83729 0.80174 0.86009 1.90830 1.51098 1.58603 1.37942 1.20859 0.91598 0.98285 0.88211 1.22938 0.95957 1.02820 1.02215 1.17305 0.87824 0.79562 0.87073 1.90782 1.23401 1.43251 1.84100 1.22401 0.95619 1.11061 1.03591 1.21733 0.97767 0.90968 0.87485 1.41119 1.17512 1.49206 1.10935 0.74382 0.95422 0.92898 0.94496 0.94836 0.87899 0.92347 0.78445 0.82331 0.83510 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.13 -2.84 5.45 -26.73 -0.15 -2.99 16 3 C 0.27 6.07 2.24 -69.08 -0.15 5.92 16 4 H 0.06 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -12.88 8.73 -34.44 -0.30 -13.19 16 6 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -23.03 11.29 55.43 0.63 -22.40 16 9 Si 0.90 19.15 29.54 -169.99 -5.02 14.13 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 13 N -0.70 -12.22 5.01 -55.77 -0.28 -12.50 16 14 C 0.54 9.51 6.38 -12.17 -0.08 9.43 16 15 O -0.51 -10.91 13.41 5.37 0.07 -10.84 16 16 C 0.12 1.70 6.77 -82.48 -0.56 1.14 16 17 C -0.21 -3.39 9.55 -38.95 -0.37 -3.76 16 18 C 0.39 6.27 6.78 -37.00 -0.25 6.02 16 19 O -0.53 -10.51 17.89 4.74 0.08 -10.43 16 20 C -0.30 -3.45 10.00 -39.45 -0.39 -3.85 16 21 C 0.15 1.20 11.13 -17.29 -0.19 1.00 16 22 N -0.58 -5.50 5.24 -9.82 -0.05 -5.55 16 23 H 0.42 2.88 7.00 -40.82 -0.29 2.59 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 26 H 0.04 0.73 5.64 -51.93 -0.29 0.44 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.38 5.28 6.76 -40.82 -0.28 5.00 16 31 H 0.16 2.71 7.58 -52.48 -0.40 2.31 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 281.35 15.07 4.24 4.24 Total: -1.00 -31.68 281.35 -6.15 -37.83 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.59 Total: 6.74 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.22 Total: -1.23 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.29 Total: -40.44 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.16 Total: -21.26 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.68 -6.15 -37.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.311 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds