Wall clock time and date at job start Mon Mar 30 2020 18:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35125 * 107.11467 * 179.89495 * 3 2 1 5 5 O 1.33927 * 108.77172 * 0.37644 * 4 3 2 6 6 C 1.34915 * 109.38049 * 359.75840 * 5 4 3 7 7 C 1.46659 * 125.98808 * 180.02562 * 6 5 4 8 8 O 1.21699 * 120.00176 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00087 * 359.96120 * 7 6 5 10 10 C 1.46494 * 119.99920 * 179.97438 * 9 7 6 11 11 C 1.53955 * 113.74239 * 253.74169 * 10 9 7 12 12 N 1.47810 * 86.03707 * 222.08834 * 11 10 9 13 13 C 1.36939 * 134.45474 * 204.64800 * 12 11 10 14 14 H 1.07999 * 119.99813 * 179.86311 * 13 12 11 15 15 C 1.38812 * 120.00050 * 359.85975 * 13 12 11 16 16 N 1.31620 * 119.99807 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00000 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46906 * 60.00023 * 17 15 13 19 19 H 1.48493 * 109.47023 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47203 * 300.00420 * 17 15 13 21 21 C 1.47585 * 91.05420 * 24.54347 * 12 11 10 22 22 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 25 25 H 1.08007 * 126.44353 * 0.04007 * 3 2 1 26 26 H 1.08006 * 125.61648 * 180.11310 * 4 3 2 27 27 H 0.97000 * 119.99816 * 0.02562 * 9 7 6 28 28 H 1.09001 * 112.94593 * 25.33253 * 10 9 7 29 29 H 1.09002 * 113.76752 * 336.34859 * 11 10 9 30 30 H 1.08995 * 113.76800 * 107.74800 * 11 10 9 31 31 H 0.97004 * 119.99529 * 180.02562 * 16 15 13 32 32 H 1.08991 * 113.77164 * 221.15336 * 21 12 11 33 33 H 1.09002 * 113.75975 * 89.75455 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0024 5 8 3.6005 -0.6647 -0.0045 6 6 2.3220 -1.0955 -0.0060 7 6 1.8843 -2.4953 -0.0125 8 8 0.6967 -2.7615 -0.0128 9 7 2.7971 -3.4868 -0.0183 10 6 2.3598 -4.8850 -0.0242 11 6 2.5532 -5.6006 1.3251 12 7 3.0282 -6.7523 0.5297 13 6 3.0868 -8.1042 0.7399 14 1 3.4897 -8.7525 -0.0241 15 6 2.6284 -8.6412 1.9350 16 7 2.1370 -7.8511 2.8659 17 14 2.7090 -10.4853 2.2221 18 1 4.1214 -10.9371 2.1441 19 1 2.1611 -10.8015 3.5655 20 1 1.9081 -11.1833 1.1845 21 6 3.4113 -5.8610 -0.5825 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5089 25 1 2.0306 2.1595 0.0006 26 1 4.5046 1.2916 0.0047 27 1 3.7436 -3.2747 -0.0179 28 1 1.3665 -5.0177 -0.4529 29 1 3.3234 -5.1530 1.9533 30 1 1.6223 -5.7886 1.8600 31 1 1.8170 -8.2265 3.7012 32 1 3.1643 -6.2565 -1.5676 33 1 4.4341 -5.4901 -0.5157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030105192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:10 Heat of formation + Delta-G solvation = 10.891050 kcal Electronic energy + Delta-G solvation = -17753.382563 eV Core-core repulsion = 14781.885820 eV Total energy + Delta-G solvation = -2971.496743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.63903 -40.86824 -39.18612 -35.50996 -34.82079 -33.78965 -31.37279 -29.61376 -28.44598 -26.66093 -25.41268 -23.64417 -22.24494 -21.45943 -20.80017 -19.08044 -18.79216 -17.45523 -17.36106 -16.98878 -16.82580 -15.79655 -15.58218 -15.45023 -14.71428 -14.52598 -14.03031 -13.86339 -13.66913 -13.48347 -13.34783 -13.25061 -12.81634 -12.74691 -12.63792 -12.35260 -11.98273 -11.55679 -11.18922 -10.89300 -10.63782 -10.14348 -9.52960 -9.00107 -7.93025 -5.29171 0.05988 1.45010 1.45600 1.50045 1.56215 1.71985 2.10213 2.21758 2.50229 3.23161 3.37754 3.76697 3.79610 3.85689 3.98262 4.27924 4.46845 4.56775 4.66163 4.71348 4.77682 4.81034 4.87075 5.03266 5.13368 5.19917 5.27799 5.44978 5.47805 5.62493 5.86427 5.92097 6.49823 6.86170 7.06427 7.56501 8.48831 9.23786 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.049207 B = 0.004334 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.882631 B = 6459.307625 C = 6666.460225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.095 4.095 3 C -0.235 4.235 4 C 0.014 3.986 5 O -0.172 6.172 6 C -0.117 4.117 7 C 0.597 3.403 8 O -0.558 6.558 9 N -0.695 5.695 10 C 0.119 3.881 11 C 0.152 3.848 12 N -0.637 5.637 13 C -0.239 4.239 14 H 0.092 0.908 15 C -0.068 4.068 16 N -0.956 5.956 17 Si 0.985 3.015 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.274 1.274 21 C 0.123 3.877 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.185 0.815 26 H 0.258 0.742 27 H 0.415 0.585 28 H 0.099 0.901 29 H 0.024 0.976 30 H 0.036 0.964 31 H 0.249 0.751 32 H 0.069 0.931 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 19.697 -7.381 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.253 4.253 4 C -0.055 4.055 5 O -0.067 6.067 6 C -0.169 4.169 7 C 0.385 3.615 8 O -0.439 6.439 9 N -0.345 5.345 10 C 0.013 3.987 11 C 0.026 3.974 12 N -0.365 5.365 13 C -0.367 4.367 14 H 0.110 0.890 15 C -0.261 4.261 16 N -0.605 5.605 17 Si 0.812 3.188 18 H -0.199 1.199 19 H -0.222 1.222 20 H -0.200 1.200 21 C -0.002 4.002 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.203 0.797 26 H 0.274 0.726 27 H 0.251 0.749 28 H 0.117 0.883 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.241 18.961 -7.234 20.552 hybrid contribution 0.268 -0.884 0.677 1.146 sum 3.510 18.077 -6.557 19.547 Atomic orbital electron populations 1.20433 0.88180 1.03615 1.02953 1.21031 0.98218 0.91848 0.98693 1.22094 0.92196 1.00631 1.10402 1.25383 1.01485 0.79565 0.99049 1.84056 1.27328 1.24388 1.70967 1.21579 0.82704 0.93982 1.18625 1.16914 0.85548 0.82894 0.76152 1.90821 1.17192 1.83161 1.52727 1.45817 1.10189 1.05356 1.73157 1.23307 0.99399 0.78009 0.97949 1.22591 0.96874 0.85005 0.92964 1.46031 1.72603 1.01254 1.16570 1.19428 1.35159 0.81443 1.00691 0.89030 1.25739 1.01328 1.02795 0.96208 1.70040 1.47672 1.35365 1.07391 0.85060 0.78099 0.78967 0.76640 1.19913 1.22170 1.19976 1.23007 0.96327 0.88051 0.92854 0.90839 0.91890 0.88846 0.79746 0.72637 0.74862 0.88285 0.95824 0.94544 0.94200 0.91299 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.22 9.81 71.24 0.70 -1.53 16 2 C -0.09 -2.33 6.20 -19.74 -0.12 -2.45 16 3 C -0.23 -3.83 10.83 22.07 0.24 -3.60 16 4 C 0.01 0.20 12.08 67.10 0.81 1.01 16 5 O -0.17 -3.87 10.40 -5.02 -0.05 -3.92 16 6 C -0.12 -3.34 7.13 24.07 0.17 -3.17 16 7 C 0.60 20.85 7.79 86.44 0.67 21.52 16 8 O -0.56 -23.13 14.36 -4.34 -0.06 -23.20 16 9 N -0.69 -23.06 5.37 -451.35 -2.42 -25.48 16 10 C 0.12 4.80 4.40 46.75 0.21 5.01 16 11 C 0.15 7.69 7.33 86.44 0.63 8.33 16 12 N -0.64 -33.41 3.70 -716.61 -2.65 -36.07 16 13 C -0.24 -13.61 10.70 84.03 0.90 -12.71 16 14 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 16 N -0.96 -59.68 11.39 21.65 0.25 -59.43 16 17 Si 0.99 46.27 29.55 68.60 2.03 48.30 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 C 0.12 4.84 8.69 86.49 0.75 5.59 16 22 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 23 H 0.06 1.81 6.45 -2.39 -0.02 1.79 16 24 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 26 H 0.26 0.80 8.06 -2.91 -0.02 0.78 16 27 H 0.41 11.43 8.47 -92.71 -0.79 10.64 16 28 H 0.10 4.32 7.50 -2.39 -0.02 4.30 16 29 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 2.12 7.16 -2.39 -0.02 2.11 16 31 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.06 2.22 8.11 -2.39 -0.02 2.20 16 Total: -1.00 -74.93 289.06 2.86 -72.07 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.35 Total: 13.20 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 5.43 Total: 14.54 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -4.83 Total: -120.98 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.11 Total: -27.12 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -74.93 2.86 -72.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030105192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.958 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds