Wall clock time and date at job start Mon Mar 30 2020 18:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47049 * 2 1 4 4 C 1.50701 * 109.47312 * 119.99418 * 2 1 3 5 5 H 1.08002 * 120.00136 * 119.99744 * 4 2 1 6 6 C 1.37883 * 119.99935 * 300.00645 * 4 2 1 7 7 N 1.31510 * 119.99854 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99885 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46973 * 90.00584 * 8 6 4 10 10 H 1.48508 * 109.46793 * 210.00213 * 8 6 4 11 11 H 1.48493 * 109.47166 * 330.00107 * 8 6 4 12 12 C 1.50697 * 109.47599 * 239.99810 * 2 1 3 13 13 O 1.21278 * 119.99939 * 240.00258 * 12 2 1 14 14 N 1.34778 * 120.00014 * 59.99197 * 12 2 1 15 15 C 1.46497 * 119.99779 * 180.02562 * 14 12 2 16 16 C 1.50710 * 109.46893 * 180.02562 * 15 14 12 17 17 C 1.38084 * 119.58191 * 95.02146 * 16 15 14 18 18 C 1.38783 * 119.28927 * 179.97438 * 17 16 15 19 19 C 1.38427 * 118.48022 * 359.73215 * 18 17 16 20 20 C 1.38871 * 119.11250 * 0.51433 * 19 18 17 21 21 O 1.35685 * 119.68176 * 179.75304 * 20 19 18 22 22 N 1.31930 * 119.58263 * 275.00342 * 16 15 14 23 23 H 1.08999 * 109.47145 * 60.00286 * 1 2 3 24 24 H 1.08997 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47378 * 300.00120 * 1 2 3 26 26 H 0.97005 * 120.00253 * 179.97438 * 7 6 4 27 27 H 0.96997 * 119.99930 * 0.02562 * 14 12 2 28 28 H 1.09003 * 109.46914 * 60.01061 * 15 14 12 29 29 H 1.09000 * 109.47610 * 300.00339 * 15 14 12 30 30 H 1.08007 * 120.36049 * 359.97438 * 17 16 15 31 31 H 1.07996 * 120.75934 * 180.02562 * 18 17 16 32 32 H 1.08008 * 120.43969 * 180.25957 * 19 18 17 33 33 H 0.96701 * 113.99705 * 269.72748 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 2.1372 -0.8593 3.5566 8 14 0.6257 1.2799 2.6540 9 1 -0.8022 0.8744 2.6993 10 1 0.9770 1.9956 3.9070 11 1 0.8489 2.1773 1.4922 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1190 14 7 1.7068 -0.2501 -2.4545 15 6 2.1948 -0.9411 -3.6506 16 6 1.6929 -0.2304 -4.8812 17 6 2.4926 0.7110 -5.4984 18 6 2.0246 1.3615 -6.6316 19 6 0.7662 1.0355 -7.1075 20 6 0.0148 0.0823 -6.4328 21 8 -1.2222 -0.2424 -6.8862 22 7 0.4953 -0.5158 -5.3553 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9031 -0.5277 4.4377 27 1 1.1493 0.5387 -2.5436 28 1 1.8310 -1.9686 -3.6504 29 1 3.2848 -0.9415 -3.6508 30 1 3.4718 0.9388 -5.1037 31 1 2.6303 2.1015 -7.1334 32 1 0.3725 1.5191 -7.9893 33 1 -1.9326 0.2950 -6.5099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118751760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:18 Heat of formation + Delta-G solvation = -36.617107 kcal Electronic energy + Delta-G solvation = -17584.433237 eV Core-core repulsion = 14610.876386 eV Total energy + Delta-G solvation = -2973.556852 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78602 -38.91221 -37.44024 -34.46222 -33.80391 -32.69224 -31.40618 -30.51693 -26.74553 -25.11173 -23.58273 -23.07138 -21.89203 -19.52406 -18.88559 -17.04973 -16.74595 -16.62174 -16.15921 -15.72149 -15.32316 -14.60245 -14.43735 -13.91925 -13.40168 -13.34131 -12.97858 -12.79703 -12.37652 -12.27806 -12.14173 -11.92925 -11.54281 -10.94598 -10.59657 -10.31122 -10.20975 -9.67929 -9.61983 -9.26706 -9.08149 -8.65890 -8.60537 -8.53730 -6.03324 -4.03423 0.64590 0.90149 3.09024 3.24682 3.31494 3.37320 3.44605 3.58867 3.93778 4.28284 4.39283 4.45471 4.73902 4.76529 5.14248 5.20173 5.26198 5.47669 5.68146 5.78805 5.88321 5.97071 6.14185 6.18829 6.34213 6.47104 6.73610 6.88076 7.18515 7.18624 7.55740 7.67762 8.10001 8.56734 9.07914 9.17442 9.55638 11.09681 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.034992 B = 0.004731 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.984466 B = 5916.387084 C = 6187.467150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 H 0.052 0.948 4 C -0.505 4.505 5 H 0.094 0.906 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.530 3.470 13 O -0.529 6.529 14 N -0.740 5.740 15 C 0.170 3.830 16 C 0.143 3.857 17 C -0.165 4.165 18 C -0.061 4.061 19 C -0.186 4.186 20 C 0.310 3.690 21 O -0.483 6.483 22 N -0.488 5.488 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.264 0.736 27 H 0.395 0.605 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 8.630 -21.284 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 H 0.070 0.930 4 C -0.543 4.543 5 H 0.112 0.888 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.319 3.681 13 O -0.403 6.403 14 N -0.396 5.396 15 C 0.045 3.955 16 C 0.005 3.995 17 C -0.185 4.185 18 C -0.086 4.086 19 C -0.207 4.207 20 C 0.130 3.870 21 O -0.290 6.290 22 N -0.207 5.207 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.228 0.772 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.618 6.832 -20.925 22.307 hybrid contribution -0.828 2.139 -0.139 2.298 sum -4.446 8.971 -21.064 23.322 Atomic orbital electron populations 1.22111 0.97302 1.01612 0.99125 1.19310 0.93219 0.97526 0.92443 0.93016 1.20948 1.32065 1.14116 0.87194 0.88817 1.24979 0.95825 0.96563 0.95762 1.69881 1.45509 1.40166 0.97855 0.86913 0.80750 0.83845 0.77009 1.20536 1.22332 1.19311 1.21295 0.78886 0.84304 0.83656 1.90591 1.37209 1.26155 1.86319 1.46182 1.55787 1.32666 1.04949 1.20054 0.98825 0.96388 0.80232 1.21106 0.88718 0.93845 0.95879 1.22102 1.01911 0.97673 0.96851 1.21534 0.94685 0.97666 0.94762 1.22134 0.96684 0.99109 1.02809 1.19172 0.87582 0.90639 0.89581 1.84784 1.14029 1.63648 1.66569 1.66997 1.15210 1.26029 1.12491 0.94925 0.92268 0.93324 0.92575 0.77150 0.89943 0.89891 0.83842 0.84057 0.84172 0.74116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.57 37.16 0.32 -2.69 16 2 C 0.00 -0.08 2.23 -92.93 -0.21 -0.29 16 3 H 0.05 1.17 7.20 -51.92 -0.37 0.79 16 4 C -0.51 -14.67 8.96 -34.44 -0.31 -14.98 16 5 H 0.09 3.10 7.00 -52.49 -0.37 2.73 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 8 Si 0.88 21.37 24.37 -169.99 -4.14 17.23 16 9 H -0.28 -6.53 6.87 56.52 0.39 -6.15 16 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -6.00 6.53 56.52 0.37 -5.63 16 12 C 0.53 11.63 7.15 -10.99 -0.08 11.55 16 13 O -0.53 -13.67 15.46 5.56 0.09 -13.59 16 14 N -0.74 -12.29 5.44 -61.47 -0.33 -12.63 16 15 C 0.17 2.47 5.98 -5.19 -0.03 2.43 16 16 C 0.14 1.76 6.15 -82.60 -0.51 1.25 16 17 C -0.16 -1.57 9.71 -39.44 -0.38 -1.95 16 18 C -0.06 -0.47 10.17 -39.31 -0.40 -0.87 16 19 C -0.19 -1.57 10.04 -39.28 -0.39 -1.96 16 20 C 0.31 3.44 7.74 -17.13 -0.13 3.30 16 21 O -0.48 -4.72 13.56 -18.76 -0.25 -4.97 16 22 N -0.49 -6.57 10.30 -9.55 -0.10 -6.67 16 23 H 0.03 0.55 7.56 -51.93 -0.39 0.15 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.40 5.70 7.88 -40.82 -0.32 5.37 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.13 8.04 -51.93 -0.42 0.72 16 30 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.40 1.94 9.06 45.56 0.41 2.36 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -35.97 284.52 -4.83 -40.80 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -2.93 Total: 4.81 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.22 Total: -2.24 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.34 Total: -46.32 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.17 Total: -18.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -35.97 -4.83 -40.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118751760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.181 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds