Wall clock time and date at job start Mon Mar 30 2020 18:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47049 * 2 1 4 4 C 1.50701 * 109.47312 * 119.99418 * 2 1 3 5 5 H 1.08002 * 120.00136 * 119.99744 * 4 2 1 6 6 C 1.37883 * 119.99935 * 300.00645 * 4 2 1 7 7 N 1.31510 * 119.99854 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99885 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46973 * 90.00584 * 8 6 4 10 10 H 1.48508 * 109.46793 * 210.00213 * 8 6 4 11 11 H 1.48493 * 109.47166 * 330.00107 * 8 6 4 12 12 C 1.50697 * 109.47599 * 239.99810 * 2 1 3 13 13 O 1.21278 * 119.99939 * 240.00258 * 12 2 1 14 14 N 1.34778 * 120.00014 * 59.99197 * 12 2 1 15 15 C 1.46497 * 119.99779 * 180.02562 * 14 12 2 16 16 C 1.50710 * 109.46893 * 180.02562 * 15 14 12 17 17 C 1.38084 * 119.58191 * 95.02146 * 16 15 14 18 18 C 1.38783 * 119.28927 * 179.97438 * 17 16 15 19 19 C 1.38427 * 118.48022 * 359.73215 * 18 17 16 20 20 C 1.38871 * 119.11250 * 0.51433 * 19 18 17 21 21 O 1.35685 * 119.68176 * 179.75304 * 20 19 18 22 22 N 1.31930 * 119.58263 * 275.00342 * 16 15 14 23 23 H 1.08999 * 109.47145 * 60.00286 * 1 2 3 24 24 H 1.08997 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47378 * 300.00120 * 1 2 3 26 26 H 0.97005 * 120.00253 * 179.97438 * 7 6 4 27 27 H 0.96997 * 119.99930 * 0.02562 * 14 12 2 28 28 H 1.09003 * 109.46914 * 60.01061 * 15 14 12 29 29 H 1.09000 * 109.47610 * 300.00339 * 15 14 12 30 30 H 1.08007 * 120.36049 * 359.97438 * 17 16 15 31 31 H 1.07996 * 120.75934 * 180.02562 * 18 17 16 32 32 H 1.08008 * 120.43969 * 180.25957 * 19 18 17 33 33 H 0.96701 * 113.99705 * 269.72748 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 2.1372 -0.8593 3.5566 8 14 0.6257 1.2799 2.6540 9 1 -0.8022 0.8744 2.6993 10 1 0.9770 1.9956 3.9070 11 1 0.8489 2.1773 1.4922 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1190 14 7 1.7068 -0.2501 -2.4545 15 6 2.1948 -0.9411 -3.6506 16 6 1.6929 -0.2304 -4.8812 17 6 2.4926 0.7110 -5.4984 18 6 2.0246 1.3615 -6.6316 19 6 0.7662 1.0355 -7.1075 20 6 0.0148 0.0823 -6.4328 21 8 -1.2222 -0.2424 -6.8862 22 7 0.4953 -0.5158 -5.3553 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9031 -0.5277 4.4377 27 1 1.1493 0.5387 -2.5436 28 1 1.8310 -1.9686 -3.6504 29 1 3.2848 -0.9415 -3.6508 30 1 3.4718 0.9388 -5.1037 31 1 2.6303 2.1015 -7.1334 32 1 0.3725 1.5191 -7.9893 33 1 -1.9326 0.2950 -6.5099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118751760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:18 Heat of formation + Delta-G solvation = -69.183076 kcal Electronic energy + Delta-G solvation = -17585.845404 eV Core-core repulsion = 14610.876386 eV Total energy + Delta-G solvation = -2974.969018 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.59217 -40.55168 -38.22028 -35.87085 -35.73822 -33.62042 -33.23754 -31.58407 -27.88076 -27.10036 -24.62301 -24.28332 -23.02933 -21.18967 -19.65950 -18.81022 -18.14421 -17.54592 -17.17594 -17.14336 -16.41059 -16.25242 -16.08753 -15.08664 -14.85628 -14.59269 -14.18725 -14.04529 -13.90349 -13.65961 -13.36572 -13.00236 -12.78076 -12.67898 -12.52813 -12.14728 -11.46430 -11.22054 -10.95542 -10.77317 -10.58382 -10.43275 -10.07781 -9.86848 -8.25796 -6.33760 -0.09285 0.21648 1.34511 1.40661 1.52158 1.84009 2.19051 2.35581 2.64041 2.78869 3.07719 3.42141 3.79609 4.03630 4.10927 4.14276 4.42005 4.44479 4.45962 4.59560 4.61908 4.71618 4.80357 5.00291 5.09863 5.16836 5.42567 5.45344 5.52707 5.56179 6.26651 6.61652 6.64818 6.84009 6.93140 7.27042 7.46032 8.91984 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.034992 B = 0.004731 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.984466 B = 5916.387084 C = 6187.467150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 H 0.074 0.926 4 C -0.522 4.522 5 H 0.030 0.970 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.229 1.229 12 C 0.530 3.470 13 O -0.582 6.582 14 N -0.715 5.715 15 C 0.172 3.828 16 C 0.122 3.878 17 C -0.160 4.160 18 C -0.050 4.050 19 C -0.173 4.173 20 C 0.292 3.708 21 O -0.496 6.496 22 N -0.528 5.528 23 H 0.081 0.919 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.267 0.733 27 H 0.410 0.590 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 12.316 -24.080 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.091 0.909 4 C -0.560 4.560 5 H 0.048 0.952 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.785 3.215 9 H -0.189 1.189 10 H -0.226 1.226 11 H -0.152 1.152 12 C 0.318 3.682 13 O -0.460 6.460 14 N -0.369 5.369 15 C 0.047 3.953 16 C -0.015 4.015 17 C -0.180 4.180 18 C -0.076 4.076 19 C -0.194 4.194 20 C 0.113 3.887 21 O -0.306 6.306 22 N -0.248 5.248 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.246 0.754 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.179 0.821 31 H 0.199 0.801 32 H 0.188 0.812 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -5.065 10.555 -23.788 26.513 hybrid contribution -0.350 0.915 0.615 1.157 sum -5.415 11.470 -23.173 26.417 Atomic orbital electron populations 1.22010 0.94701 1.01511 1.01374 1.19263 0.95188 0.97687 0.90715 0.90857 1.21099 1.31665 1.12884 0.90333 0.95171 1.26037 0.97430 1.00763 0.94778 1.70078 1.47667 1.42813 0.98733 0.85701 0.78654 0.79049 0.78131 1.18871 1.22643 1.15169 1.21075 0.78480 0.83617 0.85013 1.90577 1.39764 1.28473 1.87223 1.45834 1.54523 1.32461 1.04054 1.20056 0.99214 0.95413 0.80570 1.20708 0.89551 0.95523 0.95714 1.22299 1.02108 0.96497 0.97122 1.21983 0.94517 0.97406 0.93659 1.22468 0.96426 0.97633 1.02848 1.19474 0.88264 0.91426 0.89566 1.84746 1.14463 1.64646 1.66724 1.66819 1.16134 1.27546 1.14297 0.90061 0.93765 0.93429 0.92387 0.75359 0.92369 0.89189 0.82118 0.80146 0.81239 0.72047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 8.57 71.98 0.62 -4.81 16 2 C -0.01 -0.32 2.23 -12.29 -0.03 -0.35 16 3 H 0.07 3.09 7.20 -2.38 -0.02 3.07 16 4 C -0.52 -31.48 8.96 25.60 0.23 -31.25 16 5 H 0.03 2.15 7.00 -2.91 -0.02 2.13 16 6 C 0.01 0.37 5.45 84.66 0.46 0.83 16 7 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 8 Si 0.96 43.14 24.37 68.60 1.67 44.81 16 9 H -0.26 -11.13 6.87 99.48 0.68 -10.45 16 10 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.23 -8.80 6.53 99.48 0.65 -8.15 16 12 C 0.53 23.48 7.15 87.66 0.63 24.10 16 13 O -0.58 -31.69 15.46 -3.02 -0.05 -31.74 16 14 N -0.71 -22.94 5.44 -466.78 -2.54 -25.48 16 15 C 0.17 4.96 5.98 85.64 0.51 5.47 16 16 C 0.12 2.83 6.15 42.51 0.26 3.09 16 17 C -0.16 -2.51 9.71 22.36 0.22 -2.30 16 18 C -0.05 -0.54 10.17 22.45 0.23 -0.31 16 19 C -0.17 -2.20 10.04 22.47 0.23 -1.98 16 20 C 0.29 5.80 7.74 84.78 0.66 6.46 16 21 O -0.50 -8.73 13.56 -90.03 -1.22 -9.95 16 22 N -0.53 -13.53 10.30 -296.97 -3.06 -16.59 16 23 H 0.08 2.38 7.56 -2.39 -0.02 2.36 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.88 3.27 -2.39 -0.01 1.87 16 26 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 27 H 0.41 10.68 7.88 -92.71 -0.73 9.95 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 2.46 8.04 -2.39 -0.02 2.44 16 30 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 32 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.42 3.22 9.06 -74.06 -0.67 2.55 16 Total: -1.00 -84.59 284.52 -1.21 -85.80 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.32 Total: 15.47 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 4.01 Total: -1.03 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -5.30 Total: -103.36 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.27 Total: -41.69 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.67 Total: 44.81 kcal Total: -84.59 -1.21 -85.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118751760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.620 kcal (2) G-P(sol) polarization free energy of solvation -84.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds