Wall clock time and date at job start Mon Mar 30 2020 18:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46845 * 2 1 4 4 C 1.50695 * 109.47433 * 240.00143 * 2 1 3 5 5 H 1.07993 * 120.00205 * 240.00467 * 4 2 1 6 6 C 1.37883 * 119.99918 * 59.99569 * 4 2 1 7 7 N 1.31513 * 119.99784 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99621 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47458 * 90.00839 * 8 6 4 10 10 H 1.48509 * 109.46634 * 210.00143 * 8 6 4 11 11 H 1.48501 * 109.47532 * 330.00191 * 8 6 4 12 12 C 1.50698 * 109.46728 * 119.99967 * 2 1 3 13 13 O 1.21267 * 119.99890 * 120.00242 * 12 2 1 14 14 N 1.34778 * 120.00360 * 300.00047 * 12 2 1 15 15 C 1.38851 * 119.99992 * 175.04019 * 14 12 2 16 16 C 1.41036 * 120.52558 * 57.66963 * 15 14 12 17 17 C 1.35001 * 119.79107 * 179.97438 * 16 15 14 18 18 N 1.35911 * 120.89932 * 359.97438 * 17 16 15 19 19 C 1.46497 * 119.45198 * 180.02562 * 18 17 16 20 20 C 1.34588 * 121.09487 * 0.02562 * 18 17 16 21 21 O 1.22132 * 119.92209 * 180.02562 * 20 18 17 22 22 C 1.38397 * 120.52247 * 237.38849 * 15 14 12 23 23 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47328 * 300.00194 * 1 2 3 25 25 H 1.09003 * 109.47093 * 59.99658 * 1 2 3 26 26 H 0.97004 * 119.99621 * 179.97438 * 7 6 4 27 27 H 0.96996 * 119.99864 * 355.03606 * 14 12 2 28 28 H 1.07990 * 120.10343 * 359.97438 * 16 15 14 29 29 H 1.07997 * 119.54990 * 179.97438 * 17 16 15 30 30 H 1.09003 * 109.47430 * 89.99540 * 19 18 17 31 31 H 1.08997 * 109.47235 * 209.99565 * 19 18 17 32 32 H 1.09000 * 109.47111 * 329.99170 * 19 18 17 33 33 H 1.07993 * 120.44522 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1616 -4.4120 10 1 2.4866 -0.1412 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 6 2.0322 -0.7104 1.2305 13 8 2.7294 -1.6964 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 2.0821 -0.9613 3.5864 16 6 3.4402 -1.2521 3.8319 17 6 3.7887 -1.9443 4.9373 18 7 2.8474 -2.3669 5.8219 19 6 3.2612 -3.1152 7.0114 20 6 1.5414 -2.1093 5.6231 21 8 0.7137 -2.4989 6.4322 22 6 1.1302 -1.3911 4.4945 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1618 -3.4844 27 1 1.2100 0.5783 2.5449 28 1 4.1988 -0.9221 3.1378 29 1 4.8298 -2.1651 5.1212 30 1 3.4583 -2.4201 7.8276 31 1 2.4668 -3.8022 7.3030 32 1 4.1663 -3.6801 6.7886 33 1 0.0840 -1.1782 4.3325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119461743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:19 Heat of formation + Delta-G solvation = -60.315382 kcal Electronic energy + Delta-G solvation = -17869.786447 eV Core-core repulsion = 14895.201961 eV Total energy + Delta-G solvation = -2974.584486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.39665 -40.85912 -38.02366 -36.78215 -35.80409 -33.77635 -32.24598 -30.90065 -28.12462 -27.20403 -25.25289 -24.69784 -23.11527 -21.30642 -19.09147 -18.55582 -18.27312 -17.93964 -17.54112 -16.96227 -16.53204 -16.24477 -15.83315 -15.14180 -14.97523 -14.46309 -14.19303 -14.05298 -13.66187 -13.46392 -13.02673 -12.97075 -12.75142 -12.66999 -12.58480 -12.24292 -12.02396 -11.43429 -11.31920 -11.04357 -10.66295 -10.40992 -10.03261 -9.03324 -8.15245 -6.25682 -0.29176 0.80746 1.42683 1.44315 1.54935 1.69497 1.76375 2.14334 2.47065 2.60119 3.15404 3.71748 3.78713 4.11307 4.19839 4.27073 4.47709 4.50148 4.57155 4.73338 4.82347 4.92199 4.98357 5.01131 5.25384 5.33192 5.47153 5.68827 5.74883 5.91806 6.02643 6.16989 6.51681 6.82755 6.94602 7.28951 7.44277 8.90606 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044695 B = 0.004784 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.323828 B = 5851.704731 C = 6185.293001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.028 3.972 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.531 3.469 13 O -0.556 6.556 14 N -0.682 5.682 15 C 0.258 3.742 16 C -0.240 4.240 17 C 0.169 3.831 18 N -0.499 5.499 19 C 0.054 3.946 20 C 0.512 3.488 21 O -0.605 6.605 22 C -0.300 4.300 23 H 0.021 0.979 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.265 0.735 27 H 0.425 0.575 28 H 0.148 0.852 29 H 0.223 0.777 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.932 -1.693 15.599 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.006 3.994 3 H 0.070 0.930 4 C -0.567 4.567 5 H 0.071 0.929 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.322 3.678 13 O -0.432 6.432 14 N -0.333 5.333 15 C 0.159 3.841 16 C -0.264 4.264 17 C 0.041 3.959 18 N -0.208 5.208 19 C -0.086 4.086 20 C 0.317 3.683 21 O -0.494 6.494 22 C -0.325 4.325 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.265 0.735 28 H 0.166 0.834 29 H 0.239 0.761 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.144 0.856 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.836 -2.541 15.870 17.466 hybrid contribution -0.341 0.145 -1.131 1.190 sum 6.496 -2.397 14.739 16.285 Atomic orbital electron populations 1.21611 0.95105 0.99509 1.01995 1.18840 0.95237 0.96447 0.88835 0.92963 1.21265 1.31790 1.12851 0.90838 0.92918 1.25572 0.95152 0.95680 1.01416 1.69942 1.37115 1.23495 1.24383 0.85599 0.78699 0.78457 0.79159 1.20327 1.20118 1.20041 1.21792 0.77643 0.83789 0.84539 1.90548 1.37887 1.27849 1.86922 1.43592 1.58786 1.27263 1.03638 1.18471 0.93113 0.87629 0.84928 1.20939 0.95248 1.09361 1.00843 1.22446 0.96406 0.90115 0.86929 1.45550 1.07097 1.45614 1.22564 1.22447 1.03161 0.97446 0.85575 1.16671 0.81955 0.82343 0.87321 1.90914 1.51533 1.58196 1.48735 1.22226 1.00782 1.10209 0.99251 0.95975 0.92859 0.90819 0.92573 0.73497 0.83419 0.76072 0.88916 0.90699 0.85645 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.87 71.98 0.64 -4.85 16 2 C 0.03 1.31 2.63 -12.29 -0.03 1.28 16 3 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 4 C -0.53 -29.33 8.37 25.60 0.21 -29.12 16 5 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.91 -49.65 11.32 21.45 0.24 -49.40 16 8 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.53 22.86 7.00 87.66 0.61 23.47 16 13 O -0.56 -27.40 14.55 -2.99 -0.04 -27.44 16 14 N -0.68 -22.49 5.11 -303.03 -1.55 -24.04 16 15 C 0.26 7.94 5.82 38.75 0.23 8.16 16 16 C -0.24 -6.11 8.85 22.21 0.20 -5.92 16 17 C 0.17 2.93 10.26 83.32 0.85 3.79 16 18 N -0.50 -10.71 2.99 -675.29 -2.02 -12.73 16 19 C 0.05 0.70 10.35 127.77 1.32 2.02 16 20 C 0.51 16.02 7.39 84.69 0.63 16.65 16 21 O -0.61 -22.89 16.61 -5.75 -0.10 -22.98 16 22 C -0.30 -9.49 9.96 22.72 0.23 -9.27 16 23 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 1.89 7.68 -2.38 -0.02 1.87 16 25 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 26 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.43 11.53 8.40 -92.71 -0.78 10.75 16 28 H 0.15 3.84 7.92 -2.92 -0.02 3.82 16 29 H 0.22 1.28 8.03 -2.91 -0.02 1.26 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.31 7.37 -2.39 -0.02 1.29 16 32 H 0.13 0.61 8.00 -2.39 -0.02 0.59 16 33 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -74.31 287.27 4.25 -70.06 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.35 Total: 13.06 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.33 Total: 7.82 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -3.32 Total: -86.17 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.14 Total: -50.43 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -74.31 4.25 -70.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119461743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.748 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds