Wall clock time and date at job start Mon Mar 30 2020 18:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99592 * 2 1 4 4 H 1.48500 * 109.46846 * 87.68355 * 3 2 1 5 5 H 1.48493 * 109.46983 * 207.68163 * 3 2 1 6 6 H 1.48499 * 109.47278 * 327.68177 * 3 2 1 7 7 C 1.38807 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99594 * 17.51243 * 7 2 1 9 9 N 1.36931 * 120.00483 * 197.50862 * 7 2 1 10 10 C 1.46963 * 120.59118 * 31.35609 * 9 7 2 11 11 C 1.53816 * 108.40027 * 124.75750 * 10 9 7 12 12 N 1.46958 * 108.57754 * 49.63786 * 11 10 9 13 13 C 1.34778 * 120.59333 * 124.67179 * 12 11 10 14 14 O 1.21612 * 119.99864 * 178.37299 * 13 12 11 15 15 C 1.47422 * 119.99887 * 358.36800 * 13 12 11 16 16 C 1.41290 * 126.41748 * 29.18056 * 15 13 12 17 17 N 1.30444 * 108.02348 * 179.85085 * 16 15 13 18 18 N 1.39937 * 108.89639 * 0.40808 * 17 16 15 19 19 H 0.97000 * 125.75260 * 179.73581 * 18 17 16 20 20 C 1.34255 * 108.49241 * 359.73488 * 18 17 16 21 21 C 1.46965 * 118.81296 * 304.64691 * 12 11 10 22 22 C 1.46958 * 120.59713 * 211.63615 * 9 7 2 23 23 H 0.96998 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.61169 * 244.54197 * 10 9 7 25 25 H 1.09009 * 109.61167 * 5.04914 * 10 9 7 26 26 H 1.09001 * 109.74108 * 289.85052 * 11 10 9 27 27 H 1.08999 * 109.67306 * 169.38625 * 11 10 9 28 28 H 1.07999 * 125.98510 * 0.02562 * 16 15 13 29 29 H 1.07997 * 126.29094 * 180.02562 * 20 18 17 30 30 H 1.09006 * 109.61048 * 295.48537 * 21 12 11 31 31 H 1.09002 * 109.75515 * 175.05329 * 21 12 11 32 32 H 1.08996 * 109.61138 * 354.94662 * 22 9 7 33 33 H 1.08995 * 109.61253 * 115.46283 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4486 2.0748 1.3989 5 1 3.5713 1.4267 -0.6504 6 1 1.4729 2.6381 -0.7485 7 6 2.0104 -1.2020 0.0005 8 1 1.5079 -2.1159 -0.2805 9 7 3.3321 -1.2294 0.3573 10 6 3.8608 -0.2752 1.3421 11 6 4.5373 -1.0690 2.4726 12 7 5.4538 -2.0489 1.8731 13 6 6.7547 -2.0758 2.2244 14 8 7.4972 -2.9103 1.7436 15 6 7.2776 -1.0933 3.1912 16 6 6.5525 -0.4756 4.2347 17 7 7.3625 0.3256 4.8698 18 7 8.6236 0.2669 4.2662 19 1 9.4073 0.7682 4.5408 20 6 8.5660 -0.6002 3.2428 21 6 4.9263 -2.9995 0.8842 22 6 4.2486 -2.2093 -0.2422 23 1 -0.4850 0.8400 -0.0004 24 1 4.5901 0.3783 0.8633 25 1 3.0439 0.3207 1.7494 26 1 3.7811 -1.5879 3.0616 27 1 5.0976 -0.3888 3.1142 28 1 5.5108 -0.6404 4.4675 29 1 9.3783 -0.8638 2.5818 30 1 4.1977 -3.6559 1.3602 31 1 5.7419 -3.5949 0.4739 32 1 3.6879 -2.8913 -0.8814 33 1 5.0048 -1.6904 -0.8311 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070994780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:40 Heat of formation + Delta-G solvation = 93.027538 kcal Electronic energy + Delta-G solvation = -18596.365150 eV Core-core repulsion = 15660.722863 eV Total energy + Delta-G solvation = -2935.642287 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.52399 -39.26631 -36.95597 -34.02642 -32.30804 -31.41229 -30.83920 -30.00700 -27.19216 -24.13544 -23.64172 -22.44748 -21.77234 -20.39142 -19.23367 -18.12345 -16.68115 -16.07258 -15.63573 -15.36048 -14.86941 -14.84022 -14.37989 -14.10610 -13.62017 -13.40822 -13.14301 -12.65515 -12.47568 -12.07031 -11.78140 -11.24738 -11.05478 -10.92661 -10.39310 -10.30214 -10.09694 -9.88989 -9.58594 -9.51002 -8.92443 -8.80500 -8.27185 -6.93509 -6.00448 -3.41843 1.49619 2.11431 2.56983 3.24370 3.26226 3.44231 3.47112 3.56129 4.46532 4.53828 4.69169 4.89342 5.01891 5.20341 5.29556 5.44862 5.57496 5.62362 5.81539 5.87896 6.05779 6.09877 6.20000 6.28264 6.42627 6.51436 6.72172 6.92008 6.94357 7.33279 7.79074 7.92234 8.28698 8.49479 8.86860 9.64651 10.03183 11.15352 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.007284 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.802775 B = 3843.054624 C = 4505.651747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.271 1.271 6 H -0.302 1.302 7 C -0.263 4.263 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.114 3.886 11 C 0.067 3.933 12 N -0.591 5.591 13 C 0.589 3.411 14 O -0.561 6.561 15 C -0.282 4.282 16 C 0.075 3.925 17 N -0.297 5.297 18 N -0.467 5.467 19 H 0.443 0.557 20 C 0.123 3.877 21 C 0.096 3.904 22 C 0.134 3.866 23 H 0.264 0.736 24 H 0.030 0.970 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.204 0.796 29 H 0.189 0.811 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.305 -0.003 7.409 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.713 3.287 4 H -0.214 1.214 5 H -0.196 1.196 6 H -0.230 1.230 7 C -0.391 4.391 8 H 0.104 0.896 9 N -0.330 5.330 10 C -0.013 4.013 11 C -0.057 4.057 12 N -0.323 5.323 13 C 0.378 3.622 14 O -0.442 6.442 15 C -0.297 4.297 16 C -0.112 4.112 17 N -0.118 5.118 18 N -0.173 5.173 19 H 0.287 0.713 20 C -0.029 4.029 21 C -0.027 4.027 22 C 0.008 3.992 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.220 0.780 29 H 0.206 0.794 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 15.583 0.466 8.080 17.560 hybrid contribution 0.602 0.798 -0.555 1.143 sum 16.186 1.263 7.526 17.894 Atomic orbital electron populations 1.69801 1.05712 1.26643 1.52832 1.25383 0.95252 0.97628 0.99002 0.86936 0.79989 0.84534 0.77221 1.21388 1.19584 1.22975 1.18923 0.83236 0.94446 1.42518 0.89609 1.44292 1.06691 1.37404 1.44575 1.21813 0.97177 0.92362 0.89903 1.23123 0.92977 0.92086 0.97554 1.47778 1.07876 1.34571 1.42032 1.17269 0.81616 0.82912 0.80419 1.90725 1.57312 1.39106 1.57031 1.20363 0.94585 1.09785 1.04921 1.24527 0.99927 0.93563 0.93190 1.77178 0.89527 1.24076 1.21049 1.46191 1.11613 1.34955 1.24501 0.71297 1.22949 0.98196 0.90691 0.91051 1.22222 0.98339 0.91582 0.90576 1.21350 0.92656 0.92246 0.92973 0.92654 0.95188 0.89965 0.90647 0.88860 0.77998 0.79416 0.91426 0.89545 0.90528 0.95478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.14 13.97 55.49 0.78 -26.36 16 2 C 0.03 0.75 5.26 -17.43 -0.09 0.66 16 3 Si 0.88 21.80 24.37 -169.99 -4.14 17.66 16 4 H -0.29 -6.71 6.66 56.52 0.38 -6.33 16 5 H -0.27 -6.67 6.61 56.52 0.37 -6.30 16 6 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 7 C -0.26 -7.11 10.02 -15.06 -0.15 -7.26 16 8 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 9 N -0.61 -13.95 2.69 -171.77 -0.46 -14.41 16 10 C 0.11 2.37 4.38 -3.36 -0.01 2.35 16 11 C 0.07 1.11 5.74 -3.37 -0.02 1.09 16 12 N -0.59 -10.14 2.95 -173.48 -0.51 -10.65 16 13 C 0.59 9.92 7.64 -12.52 -0.10 9.82 16 14 O -0.56 -10.76 16.43 5.27 0.09 -10.67 16 15 C -0.28 -3.91 5.70 -105.07 -0.60 -4.51 16 16 C 0.08 0.96 9.70 -16.98 -0.16 0.80 16 17 N -0.30 -3.70 12.63 30.86 0.39 -3.31 16 18 N -0.47 -4.42 7.29 30.85 0.22 -4.20 16 19 H 0.44 2.44 8.96 -182.72 -1.64 0.80 16 20 C 0.12 1.32 11.94 -16.56 -0.20 1.12 16 21 C 0.10 1.67 6.58 -3.59 -0.02 1.65 16 22 C 0.13 2.63 6.67 -3.60 -0.02 2.60 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.03 0.64 7.08 -51.93 -0.37 0.27 16 25 H 0.08 1.83 4.66 -51.92 -0.24 1.58 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.32 3.23 -51.93 -0.17 1.16 16 28 H 0.20 2.25 5.98 -52.49 -0.31 1.94 16 29 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.45 7.01 -51.93 -0.36 1.08 16 32 H 0.08 1.45 7.93 -51.93 -0.41 1.03 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 268.02 15.07 4.04 4.04 Total: -1.00 -33.86 268.02 -5.79 -39.64 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.81 Total: -0.07 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -1.38 Total: 8.33 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.42 Total: -58.93 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.86 -5.79 -39.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.672 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds