Wall clock time and date at job start Mon Mar 30 2020 18:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99592 * 2 1 4 4 H 1.48500 * 109.46846 * 87.68355 * 3 2 1 5 5 H 1.48493 * 109.46983 * 207.68163 * 3 2 1 6 6 H 1.48499 * 109.47278 * 327.68177 * 3 2 1 7 7 C 1.38807 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99594 * 17.51243 * 7 2 1 9 9 N 1.36931 * 120.00483 * 197.50862 * 7 2 1 10 10 C 1.46963 * 120.59118 * 31.35609 * 9 7 2 11 11 C 1.53816 * 108.40027 * 124.75750 * 10 9 7 12 12 N 1.46958 * 108.57754 * 49.63786 * 11 10 9 13 13 C 1.34778 * 120.59333 * 124.67179 * 12 11 10 14 14 O 1.21612 * 119.99864 * 178.37299 * 13 12 11 15 15 C 1.47422 * 119.99887 * 358.36800 * 13 12 11 16 16 C 1.41290 * 126.41748 * 29.18056 * 15 13 12 17 17 N 1.30444 * 108.02348 * 179.85085 * 16 15 13 18 18 N 1.39937 * 108.89639 * 0.40808 * 17 16 15 19 19 H 0.97000 * 125.75260 * 179.73581 * 18 17 16 20 20 C 1.34255 * 108.49241 * 359.73488 * 18 17 16 21 21 C 1.46965 * 118.81296 * 304.64691 * 12 11 10 22 22 C 1.46958 * 120.59713 * 211.63615 * 9 7 2 23 23 H 0.96998 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.61169 * 244.54197 * 10 9 7 25 25 H 1.09009 * 109.61167 * 5.04914 * 10 9 7 26 26 H 1.09001 * 109.74108 * 289.85052 * 11 10 9 27 27 H 1.08999 * 109.67306 * 169.38625 * 11 10 9 28 28 H 1.07999 * 125.98510 * 0.02562 * 16 15 13 29 29 H 1.07997 * 126.29094 * 180.02562 * 20 18 17 30 30 H 1.09006 * 109.61048 * 295.48537 * 21 12 11 31 31 H 1.09002 * 109.75515 * 175.05329 * 21 12 11 32 32 H 1.08996 * 109.61138 * 354.94662 * 22 9 7 33 33 H 1.08995 * 109.61253 * 115.46283 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4486 2.0748 1.3989 5 1 3.5713 1.4267 -0.6504 6 1 1.4729 2.6381 -0.7485 7 6 2.0104 -1.2020 0.0005 8 1 1.5079 -2.1159 -0.2805 9 7 3.3321 -1.2294 0.3573 10 6 3.8608 -0.2752 1.3421 11 6 4.5373 -1.0690 2.4726 12 7 5.4538 -2.0489 1.8731 13 6 6.7547 -2.0758 2.2244 14 8 7.4972 -2.9103 1.7436 15 6 7.2776 -1.0933 3.1912 16 6 6.5525 -0.4756 4.2347 17 7 7.3625 0.3256 4.8698 18 7 8.6236 0.2669 4.2662 19 1 9.4073 0.7682 4.5408 20 6 8.5660 -0.6002 3.2428 21 6 4.9263 -2.9995 0.8842 22 6 4.2486 -2.2093 -0.2422 23 1 -0.4850 0.8400 -0.0004 24 1 4.5901 0.3783 0.8633 25 1 3.0439 0.3207 1.7494 26 1 3.7811 -1.5879 3.0616 27 1 5.0976 -0.3888 3.1142 28 1 5.5108 -0.6404 4.4675 29 1 9.3783 -0.8638 2.5818 30 1 4.1977 -3.6559 1.3602 31 1 5.7419 -3.5949 0.4739 32 1 3.6879 -2.8913 -0.8814 33 1 5.0048 -1.6904 -0.8311 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:39 Heat of formation + Delta-G solvation = 67.322248 kcal Electronic energy + Delta-G solvation = -18597.479815 eV Core-core repulsion = 15660.722863 eV Total energy + Delta-G solvation = -2936.756952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.47174 -40.58261 -38.50521 -35.66826 -33.75193 -32.98105 -32.11992 -31.12946 -28.84463 -25.68302 -25.13780 -23.79465 -22.86563 -21.76996 -20.41455 -19.45604 -18.32288 -17.53846 -16.95965 -16.76176 -16.30109 -16.05735 -15.86918 -15.39108 -15.13541 -14.73361 -14.64009 -14.24349 -13.90007 -13.76599 -13.35204 -12.78065 -12.45743 -12.24819 -12.18595 -11.97588 -11.76058 -11.58472 -10.92261 -10.81878 -10.70273 -9.97437 -9.71686 -8.79030 -8.16021 -5.53982 0.59937 1.09596 1.29729 1.43074 1.51309 1.78865 2.02587 2.34984 2.41247 3.09297 3.29625 3.53546 3.87617 3.97774 4.10221 4.15688 4.35326 4.37843 4.39727 4.54784 4.59295 4.70741 4.77852 4.84174 4.96924 5.17180 5.26463 5.55625 5.88220 6.13998 6.22877 6.45036 6.52944 6.89336 7.20776 7.58576 8.01004 9.03610 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.007284 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.802775 B = 3843.054624 C = 4505.651747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.028 4.028 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.312 1.312 7 C -0.250 4.250 8 H 0.054 0.946 9 N -0.619 5.619 10 C 0.108 3.892 11 C 0.080 3.920 12 N -0.598 5.598 13 C 0.592 3.408 14 O -0.589 6.589 15 C -0.318 4.318 16 C 0.072 3.928 17 N -0.314 5.314 18 N -0.447 5.447 19 H 0.461 0.539 20 C 0.147 3.853 21 C 0.106 3.894 22 C 0.134 3.866 23 H 0.263 0.737 24 H 0.031 0.969 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.213 0.787 29 H 0.218 0.782 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.948 0.911 8.639 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.223 4.223 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.241 1.241 7 C -0.380 4.380 8 H 0.072 0.928 9 N -0.344 5.344 10 C -0.017 4.017 11 C -0.044 4.044 12 N -0.329 5.329 13 C 0.383 3.617 14 O -0.471 6.471 15 C -0.333 4.333 16 C -0.115 4.115 17 N -0.136 5.136 18 N -0.154 5.154 19 H 0.310 0.690 20 C -0.007 4.007 21 C -0.018 4.018 22 C 0.008 3.992 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.141 0.859 28 H 0.229 0.771 29 H 0.235 0.765 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 18.288 1.395 9.357 20.590 hybrid contribution -0.118 0.436 -0.937 1.040 sum 18.170 1.831 8.420 20.110 Atomic orbital electron populations 1.69930 1.07358 1.27299 1.55437 1.25967 0.95795 1.00848 0.99696 0.85939 0.78315 0.80276 0.78167 1.19000 1.19341 1.24059 1.18835 0.84930 0.93271 1.40952 0.92802 1.44405 1.05790 1.38434 1.45752 1.21866 0.96842 0.92425 0.90610 1.23022 0.93188 0.92129 0.96067 1.47832 1.08378 1.34554 1.42104 1.17616 0.80931 0.82874 0.80286 1.90705 1.57758 1.40328 1.58328 1.20270 0.96271 1.11062 1.05667 1.24639 1.00553 0.93361 0.92926 1.77148 0.90552 1.24246 1.21655 1.46222 1.11513 1.34201 1.23486 0.69044 1.23356 0.97730 0.89083 0.90570 1.22028 0.98389 0.91358 0.90029 1.21437 0.92125 0.91759 0.93879 0.92830 0.95134 0.91374 0.90193 0.85906 0.77083 0.76541 0.91262 0.88772 0.90579 0.95327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 13.97 21.65 0.30 -58.17 16 2 C -0.03 -1.57 5.26 84.86 0.45 -1.13 16 3 Si 0.94 45.07 24.37 68.60 1.67 46.74 16 4 H -0.26 -11.53 6.66 99.48 0.66 -10.87 16 5 H -0.27 -12.57 6.61 99.48 0.66 -11.91 16 6 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 7 C -0.25 -13.75 10.02 84.03 0.84 -12.91 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 9 N -0.62 -28.20 2.69 -697.36 -1.87 -30.08 16 10 C 0.11 4.31 4.38 86.57 0.38 4.69 16 11 C 0.08 2.48 5.74 86.57 0.50 2.98 16 12 N -0.60 -19.35 2.95 -821.01 -2.42 -21.77 16 13 C 0.59 18.59 7.64 86.66 0.66 19.26 16 14 O -0.59 -21.42 16.43 -4.07 -0.07 -21.49 16 15 C -0.32 -7.87 5.70 -20.15 -0.11 -7.98 16 16 C 0.07 1.63 9.70 85.65 0.83 2.46 16 17 N -0.31 -6.81 12.63 -56.28 -0.71 -7.53 16 18 N -0.45 -6.72 7.29 -56.32 -0.41 -7.13 16 19 H 0.46 3.19 8.96 -213.43 -1.91 1.27 16 20 C 0.15 2.57 11.94 84.28 1.01 3.58 16 21 C 0.11 3.54 6.58 86.42 0.57 4.11 16 22 C 0.13 5.15 6.67 86.42 0.58 5.72 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.52 16 24 H 0.03 1.23 7.08 -2.39 -0.02 1.21 16 25 H 0.07 2.91 4.66 -2.38 -0.01 2.90 16 26 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.12 3.13 3.23 -2.39 -0.01 3.12 16 28 H 0.21 4.11 5.98 -2.91 -0.02 4.09 16 29 H 0.22 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.09 3.03 7.01 -2.39 -0.02 3.01 16 32 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -72.91 268.02 1.33 -71.58 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -0.85 Total: 7.05 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 5.69 Total: 20.78 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -5.11 Total: -124.67 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.07 Total: -21.49 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.67 Total: 46.74 kcal Total: -72.91 1.33 -71.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.901 kcal (2) G-P(sol) polarization free energy of solvation -72.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds