Wall clock time and date at job start Mon Mar 30 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00143 * 2 1 4 4 C 1.50699 * 109.47161 * 269.99878 * 3 2 1 5 5 H 1.08001 * 119.99709 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00035 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00135 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99826 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47000 * 90.00290 * 8 6 4 10 10 H 1.48497 * 109.46957 * 210.00042 * 8 6 4 11 11 H 1.48500 * 109.47028 * 330.00040 * 8 6 4 12 12 C 1.34776 * 119.99747 * 180.02562 * 2 1 3 13 13 O 1.21493 * 120.00333 * 183.65881 * 12 2 1 14 14 C 1.48338 * 119.99766 * 3.65559 * 12 2 1 15 15 C 1.42274 * 126.93404 * 173.39452 * 14 12 2 16 16 C 1.35316 * 103.91873 * 180.22035 * 15 14 12 17 17 C 1.50697 * 126.66603 * 179.76053 * 16 15 14 18 18 C 1.53002 * 117.50067 * 188.74857 * 17 16 15 19 19 C 1.53002 * 117.50181 * 120.08458 * 17 16 15 20 20 O 1.34013 * 106.66747 * 359.62717 * 16 15 14 21 21 N 1.20899 * 111.84702 * 0.40796 * 20 16 15 22 22 H 1.09002 * 109.47098 * 264.07993 * 1 2 3 23 23 H 1.09005 * 109.46850 * 24.07112 * 1 2 3 24 24 H 1.08992 * 109.47703 * 144.07662 * 1 2 3 25 25 H 1.08997 * 109.47001 * 30.00488 * 3 2 1 26 26 H 1.09005 * 109.46526 * 150.00333 * 3 2 1 27 27 H 0.96996 * 120.00593 * 179.97438 * 7 6 4 28 28 H 1.08003 * 128.04443 * 359.95380 * 15 14 12 29 29 H 1.09003 * 115.55004 * 334.41364 * 17 16 15 30 30 H 1.09000 * 117.49974 * 359.97438 * 18 17 16 31 31 H 1.08996 * 117.50213 * 145.01832 * 18 17 16 32 32 H 1.09002 * 117.49801 * 214.97934 * 19 17 16 33 33 H 1.08998 * 117.49681 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6180 -0.6732 8 14 3.4368 3.4175 -3.4340 9 1 2.3064 4.2601 -3.9002 10 1 4.6969 4.2007 -3.4967 11 1 3.5541 2.2205 -4.3050 12 6 2.1388 -1.1672 -0.0005 13 8 3.3519 -1.1685 0.0666 14 6 1.3993 -2.4505 -0.0830 15 6 1.9576 -3.7513 -0.2253 16 6 0.8785 -4.5672 -0.2555 17 6 0.8882 -6.0673 -0.3985 18 6 -0.4563 -6.7652 -0.6134 19 6 0.2643 -6.8888 0.7315 20 8 -0.2005 -3.7821 -0.1306 21 7 0.1006 -2.6148 -0.0391 22 1 -0.3633 -0.1060 1.0222 23 1 -0.3633 0.9384 -0.4192 24 1 -0.3634 -0.8321 -0.6029 25 1 1.6085 2.0283 0.5139 26 1 3.1500 1.1382 0.5138 27 1 4.0302 4.4439 -0.8503 28 1 3.0002 -4.0239 -0.2974 29 1 1.7588 -6.4858 -0.9035 30 1 -1.3480 -6.1394 -0.6509 31 1 -0.4702 -7.6430 -1.2594 32 1 0.7244 -7.8479 0.9696 33 1 -0.1527 -6.3442 1.5786 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073492096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:46 Heat of formation + Delta-G solvation = 63.742437 kcal Electronic energy + Delta-G solvation = -17784.989196 eV Core-core repulsion = 14815.784261 eV Total energy + Delta-G solvation = -2969.204935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.92505 -38.87399 -37.62953 -34.95012 -33.81463 -32.59282 -31.37741 -27.92958 -26.12099 -24.64086 -23.81740 -22.83437 -22.58015 -21.33324 -18.46352 -17.67425 -17.28744 -16.52813 -16.46667 -15.78174 -15.22481 -14.46670 -14.39469 -14.21936 -13.48320 -12.87845 -12.55529 -12.46091 -12.25609 -12.07082 -11.91460 -11.50804 -11.28043 -11.06341 -10.88244 -10.71144 -10.55968 -10.21877 -10.16052 -9.66546 -9.34687 -9.18163 -8.45922 -7.72455 -6.06785 -4.12198 1.29852 1.85222 2.91803 3.29829 3.35943 3.40261 3.51233 3.62390 3.81669 4.15901 4.32967 4.43411 4.49631 4.59264 4.97259 5.20157 5.26230 5.29092 5.29579 5.46474 5.55440 5.71065 5.75983 5.90147 5.99366 6.05428 6.39891 6.99378 7.36828 7.45742 7.88679 8.14809 8.18210 8.30450 8.79222 8.96168 9.52827 11.01392 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.042850 B = 0.004587 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.285047 B = 6103.049536 C = 6190.715854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.581 5.581 3 C 0.244 3.756 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.580 3.420 13 O -0.526 6.526 14 C -0.007 4.007 15 C -0.176 4.176 16 C -0.013 4.013 17 C -0.082 4.082 18 C -0.167 4.167 19 C -0.163 4.163 20 O 0.106 5.894 21 N -0.330 5.330 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.264 0.736 28 H 0.179 0.821 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 -19.313 1.494 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.313 5.313 3 C 0.125 3.875 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.364 3.636 13 O -0.402 6.402 14 C -0.166 4.166 15 C -0.198 4.198 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.204 4.204 19 C -0.201 4.201 20 O 0.035 5.965 21 N -0.035 5.035 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.196 0.804 29 H 0.156 0.844 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.796 -18.196 1.708 20.283 hybrid contribution 0.914 0.159 -1.069 1.416 sum -7.881 -18.037 0.639 19.694 Atomic orbital electron populations 1.21944 0.80392 1.03311 1.00992 1.48095 1.06966 1.07215 1.68980 1.19435 0.92720 0.77462 0.97875 1.21418 1.36868 1.06545 0.92074 0.92370 1.24932 0.95194 0.96251 0.97618 1.69928 1.38201 1.14300 1.30801 0.86458 0.77721 0.78614 0.84429 1.20552 1.20977 1.19859 1.16924 0.86372 0.81385 0.78952 1.90759 1.12510 1.86143 1.50789 1.23948 0.89757 0.97570 1.05342 1.22344 1.01290 0.89897 1.06280 1.23320 0.85896 0.94194 1.04231 1.20401 0.99920 0.83793 1.06020 1.23089 0.94953 1.02650 0.99719 1.23127 1.03027 1.01221 0.92678 1.84746 1.33485 1.12134 1.66101 1.74366 1.16043 0.95719 1.17354 0.93520 0.90618 0.90598 0.94439 0.93409 0.92604 0.80403 0.84373 0.87737 0.87659 0.87569 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 9.66 59.85 0.58 2.04 16 2 N -0.58 -13.59 2.86 -183.89 -0.53 -14.11 16 3 C 0.24 6.63 5.16 -5.19 -0.03 6.60 16 4 C -0.53 -15.45 9.39 -34.44 -0.32 -15.77 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.58 13.44 7.70 -12.10 -0.09 13.35 16 13 O -0.53 -13.87 16.52 5.37 0.09 -13.79 16 14 C -0.01 -0.13 6.87 -82.53 -0.57 -0.69 16 15 C -0.18 -2.65 10.93 -39.07 -0.43 -3.08 16 16 C -0.01 -0.17 6.93 -35.35 -0.24 -0.41 16 17 C -0.08 -0.67 6.26 -91.77 -0.57 -1.25 16 18 C -0.17 -1.10 10.18 -26.69 -0.27 -1.37 16 19 C -0.16 -1.07 10.24 -26.69 -0.27 -1.35 16 20 O 0.11 1.50 10.96 17.25 0.19 1.68 16 21 N -0.33 -5.54 8.71 33.29 0.29 -5.25 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 24 H 0.08 1.37 5.38 -51.93 -0.28 1.09 16 25 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 26 H 0.05 1.43 7.37 -51.93 -0.38 1.05 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.18 2.40 8.06 -52.48 -0.42 1.98 16 29 H 0.14 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.74 8.01 -51.93 -0.42 0.33 16 31 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -33.41 293.71 -6.13 -39.54 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -4.00 Total: -3.31 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.32 Total: -0.22 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.50 Total: -45.43 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.28 Total: -12.10 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.41 -6.13 -39.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073492096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.285 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds