Wall clock time and date at job start Mon Mar 30 2020 18:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35667 * 116.99640 * 2 1 4 4 C 1.39295 * 119.61519 * 180.02562 * 3 2 1 5 5 C 1.38332 * 119.30274 * 180.02562 * 4 3 2 6 6 C 1.38782 * 118.56027 * 359.97438 * 5 4 3 7 7 C 1.39124 * 119.18845 * 0.02562 * 6 5 4 8 8 C 1.48156 * 119.69107 * 179.97438 * 7 6 5 9 9 O 1.21521 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00375 * 179.97438 * 8 7 6 11 11 C 1.46490 * 120.00268 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46993 * 35.00779 * 11 10 8 13 13 C 1.52998 * 109.47380 * 275.00307 * 11 10 8 14 14 C 1.50703 * 109.47446 * 155.00125 * 11 10 8 15 15 H 1.08005 * 119.99551 * 35.00526 * 14 11 10 16 16 C 1.37868 * 120.00466 * 215.00504 * 14 11 10 17 17 N 1.31512 * 120.00194 * 184.91737 * 16 14 11 18 18 Si 1.86802 * 120.00167 * 4.91686 * 16 14 11 19 19 H 1.48496 * 109.47292 * 84.83080 * 18 16 14 20 20 H 1.48494 * 109.47356 * 204.83526 * 18 16 14 21 21 H 1.48500 * 109.46883 * 324.83313 * 18 16 14 22 22 N 1.31899 * 119.62155 * 0.25089 * 3 2 1 23 23 H 1.08997 * 109.47454 * 300.00103 * 1 2 3 24 24 H 1.08997 * 109.47237 * 60.00610 * 1 2 3 25 25 H 1.09008 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.34450 * 0.02562 * 4 3 2 27 27 H 1.08000 * 120.71375 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.40227 * 180.02562 * 6 5 4 29 29 H 0.97006 * 119.99628 * 0.02562 * 10 8 7 30 30 H 1.09007 * 109.46978 * 55.04113 * 13 11 10 31 31 H 1.08995 * 109.47334 * 295.03354 * 13 11 10 32 32 H 1.09001 * 109.47232 * 175.03013 * 13 11 10 33 33 H 0.97002 * 119.99993 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4363 1.2725 -0.0005 5 6 4.0576 2.5085 0.0000 6 6 3.2664 3.6487 0.0005 7 6 1.8817 3.5137 0.0010 8 6 1.0265 4.7235 0.0022 9 8 1.5351 5.8271 0.0022 10 7 -0.3156 4.6001 0.0022 11 6 -1.1613 5.7963 0.0027 12 1 -0.6836 6.5791 -0.5865 13 6 -1.3529 6.2847 1.4399 14 6 -2.5028 5.4635 -0.5978 15 1 -2.9407 4.4897 -0.4350 16 6 -3.1711 6.4020 -1.3550 17 7 -4.3830 6.1475 -1.7981 18 14 -2.3554 8.0350 -1.7517 19 1 -1.4966 7.8804 -2.9531 20 1 -3.3987 9.0578 -2.0172 21 1 -1.5226 8.4649 -0.5998 22 7 1.3191 2.3102 0.0050 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 4.0240 0.3664 -0.0014 27 1 5.1349 2.5844 0.0000 28 1 3.7201 4.6288 0.0005 29 1 -0.7216 3.7191 0.0018 30 1 -0.3788 6.4416 1.9033 31 1 -1.9089 5.5378 2.0065 32 1 -1.9075 7.2231 1.4338 33 1 -4.8530 6.8077 -2.3312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084186810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:11 Heat of formation + Delta-G solvation = -39.972943 kcal Electronic energy + Delta-G solvation = -17947.932174 eV Core-core repulsion = 14974.229803 eV Total energy + Delta-G solvation = -2973.702372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.74790 -38.96187 -37.56162 -34.94828 -32.89731 -32.17225 -30.87047 -29.58077 -27.33394 -25.34659 -24.51016 -22.89961 -21.29660 -19.69822 -18.59694 -17.73245 -16.65428 -16.06953 -16.03985 -15.72250 -15.27704 -14.47647 -14.25097 -14.12697 -13.58528 -13.19370 -13.02351 -12.52270 -12.43611 -12.23605 -11.77895 -11.51740 -11.16669 -11.10122 -10.82848 -10.61427 -10.11831 -10.02211 -9.87929 -9.25986 -9.21146 -8.70948 -8.59705 -8.09900 -6.23813 -4.27638 0.73323 1.22598 3.01439 3.11431 3.26348 3.33883 3.40805 3.72016 4.04521 4.26381 4.32240 4.85371 4.95405 5.02645 5.16576 5.26735 5.32546 5.37031 5.53642 5.68957 5.91512 6.07944 6.27725 6.33120 6.51566 6.65960 6.90135 7.11535 7.19103 7.34094 7.50622 7.67514 8.13894 8.55573 8.75916 8.89520 9.37706 10.87845 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026771 B = 0.006153 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.654162 B = 4549.244049 C = 5204.945276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.318 3.682 4 C -0.177 4.177 5 C -0.049 4.049 6 C -0.155 4.155 7 C 0.132 3.868 8 C 0.551 3.449 9 O -0.550 6.550 10 N -0.677 5.677 11 C 0.228 3.772 12 H 0.052 0.948 13 C -0.147 4.147 14 C -0.530 4.530 15 H 0.080 0.920 16 C 0.082 3.918 17 N -0.888 5.888 18 Si 0.874 3.126 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.260 1.260 22 N -0.514 5.514 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.403 0.597 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.503 -10.086 3.827 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.217 6.217 3 C 0.137 3.863 4 C -0.198 4.198 5 C -0.075 4.075 6 C -0.176 4.176 7 C -0.005 4.005 8 C 0.334 3.666 9 O -0.429 6.429 10 N -0.325 5.325 11 C 0.126 3.874 12 H 0.069 0.931 13 C -0.206 4.206 14 C -0.568 4.568 15 H 0.098 0.902 16 C -0.123 4.123 17 N -0.524 5.524 18 Si 0.700 3.300 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.184 1.184 22 N -0.241 5.241 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.238 0.762 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.800 -9.520 3.723 16.381 hybrid contribution 0.682 0.490 -0.326 0.901 sum 13.482 -9.030 3.398 16.579 Atomic orbital electron populations 1.22931 0.76708 1.03043 1.03193 1.86212 1.23323 1.24228 1.87936 1.19799 0.89366 0.84584 0.92593 1.21217 0.91964 0.99700 1.06908 1.21410 1.00683 0.90912 0.94478 1.22012 0.93264 1.00738 1.01636 1.21217 0.92457 0.90563 0.96277 1.17974 0.83334 0.86862 0.78399 1.90734 1.74182 1.25738 1.52200 1.46589 1.04485 1.12219 1.69166 1.19236 0.90128 0.84107 0.93968 0.93051 1.22215 0.99006 1.00832 0.98557 1.20989 1.00642 1.02622 1.32505 0.90232 1.24933 0.94621 0.98377 0.94359 1.69879 1.11560 1.35810 1.35164 0.86899 0.79424 0.83626 0.80023 1.19823 1.21122 1.18406 1.67229 1.40955 0.98254 1.17619 0.91944 0.91739 0.88601 0.83912 0.83588 0.83229 0.76200 0.95151 0.93300 0.92713 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.45 16 2 O -0.31 -3.99 10.48 -18.70 -0.20 -4.19 16 3 C 0.32 4.42 7.49 -17.13 -0.13 4.29 16 4 C -0.18 -1.97 10.05 -39.15 -0.39 -2.36 16 5 C -0.05 -0.52 10.16 -39.35 -0.40 -0.92 16 6 C -0.16 -2.15 9.63 -39.05 -0.38 -2.53 16 7 C 0.13 2.25 6.75 -83.02 -0.56 1.69 16 8 C 0.55 11.39 7.78 -12.19 -0.09 11.29 16 9 O -0.55 -12.65 15.98 5.35 0.09 -12.57 16 10 N -0.68 -14.61 5.06 -55.78 -0.28 -14.89 16 11 C 0.23 5.54 2.22 -69.09 -0.15 5.38 16 12 H 0.05 1.35 4.73 -51.93 -0.25 1.10 16 13 C -0.15 -3.27 9.47 37.16 0.35 -2.92 16 14 C -0.53 -14.40 9.05 -34.44 -0.31 -14.71 16 15 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 16 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 17 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 18 Si 0.87 21.59 26.99 -169.99 -4.59 17.00 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.26 -6.29 6.82 56.52 0.39 -5.91 16 22 N -0.51 -8.25 8.39 -9.87 -0.08 -8.34 16 23 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 24 H 0.06 0.78 8.10 -51.93 -0.42 0.35 16 25 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 26 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.15 1.99 7.63 -52.49 -0.40 1.59 16 29 H 0.40 8.15 7.92 -40.82 -0.32 7.82 16 30 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -31.55 291.84 -4.93 -36.48 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.92 Total: 4.64 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.11 Total: 2.86 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.41 Total: -48.62 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.11 Total: -16.76 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.59 Total: 17.00 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.55 -4.93 -36.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084186810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.494 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds