Wall clock time and date at job start Mon Mar 30 2020 18:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35667 * 116.99640 * 2 1 4 4 C 1.39295 * 119.61519 * 180.02562 * 3 2 1 5 5 C 1.38332 * 119.30274 * 180.02562 * 4 3 2 6 6 C 1.38782 * 118.56027 * 359.97438 * 5 4 3 7 7 C 1.39124 * 119.18845 * 0.02562 * 6 5 4 8 8 C 1.48156 * 119.69107 * 179.97438 * 7 6 5 9 9 O 1.21521 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00375 * 179.97438 * 8 7 6 11 11 C 1.46490 * 120.00268 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46993 * 35.00779 * 11 10 8 13 13 C 1.52998 * 109.47380 * 275.00307 * 11 10 8 14 14 C 1.50703 * 109.47446 * 155.00125 * 11 10 8 15 15 H 1.08005 * 119.99551 * 35.00526 * 14 11 10 16 16 C 1.37868 * 120.00466 * 215.00504 * 14 11 10 17 17 N 1.31512 * 120.00194 * 184.91737 * 16 14 11 18 18 Si 1.86802 * 120.00167 * 4.91686 * 16 14 11 19 19 H 1.48496 * 109.47292 * 84.83080 * 18 16 14 20 20 H 1.48494 * 109.47356 * 204.83526 * 18 16 14 21 21 H 1.48500 * 109.46883 * 324.83313 * 18 16 14 22 22 N 1.31899 * 119.62155 * 0.25089 * 3 2 1 23 23 H 1.08997 * 109.47454 * 300.00103 * 1 2 3 24 24 H 1.08997 * 109.47237 * 60.00610 * 1 2 3 25 25 H 1.09008 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.34450 * 0.02562 * 4 3 2 27 27 H 1.08000 * 120.71375 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.40227 * 180.02562 * 6 5 4 29 29 H 0.97006 * 119.99628 * 0.02562 * 10 8 7 30 30 H 1.09007 * 109.46978 * 55.04113 * 13 11 10 31 31 H 1.08995 * 109.47334 * 295.03354 * 13 11 10 32 32 H 1.09001 * 109.47232 * 175.03013 * 13 11 10 33 33 H 0.97002 * 119.99993 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4363 1.2725 -0.0005 5 6 4.0576 2.5085 0.0000 6 6 3.2664 3.6487 0.0005 7 6 1.8817 3.5137 0.0010 8 6 1.0265 4.7235 0.0022 9 8 1.5351 5.8271 0.0022 10 7 -0.3156 4.6001 0.0022 11 6 -1.1613 5.7963 0.0027 12 1 -0.6836 6.5791 -0.5865 13 6 -1.3529 6.2847 1.4399 14 6 -2.5028 5.4635 -0.5978 15 1 -2.9407 4.4897 -0.4350 16 6 -3.1711 6.4020 -1.3550 17 7 -4.3830 6.1475 -1.7981 18 14 -2.3554 8.0350 -1.7517 19 1 -1.4966 7.8804 -2.9531 20 1 -3.3987 9.0578 -2.0172 21 1 -1.5226 8.4649 -0.5998 22 7 1.3191 2.3102 0.0050 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 4.0240 0.3664 -0.0014 27 1 5.1349 2.5844 0.0000 28 1 3.7201 4.6288 0.0005 29 1 -0.7216 3.7191 0.0018 30 1 -0.3788 6.4416 1.9033 31 1 -1.9089 5.5378 2.0065 32 1 -1.9075 7.2231 1.4338 33 1 -4.8530 6.8077 -2.3312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084186810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:10 Heat of formation + Delta-G solvation = -64.313759 kcal Electronic energy + Delta-G solvation = -17948.987671 eV Core-core repulsion = 14974.229803 eV Total energy + Delta-G solvation = -2974.757868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86598 -40.43496 -38.67153 -36.79998 -34.52262 -33.68251 -32.08935 -31.22534 -28.30382 -27.37745 -25.76820 -23.90528 -22.89381 -21.43851 -20.05434 -19.02256 -18.34992 -17.36659 -17.08646 -16.99007 -16.74599 -16.06593 -15.97134 -15.16153 -15.06531 -14.58976 -14.46301 -14.22475 -14.17504 -13.33079 -13.20384 -13.04875 -12.82884 -12.68656 -12.50097 -12.17172 -11.89005 -11.48990 -11.28461 -10.99983 -10.88104 -10.61518 -9.95426 -9.58286 -8.41256 -6.48566 -0.38117 0.25485 1.28789 1.32722 1.43625 1.75291 2.06547 2.24388 2.26499 2.81493 2.93761 3.11804 3.89396 3.96322 4.04479 4.27251 4.39239 4.43712 4.46589 4.51833 4.69397 4.77179 4.80501 4.95413 5.02850 5.12829 5.31845 5.36634 5.40926 5.63518 6.03997 6.14605 6.52546 6.57253 6.84489 7.14811 7.28229 8.73781 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026771 B = 0.006153 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.654162 B = 4549.244049 C = 5204.945276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.298 3.702 4 C -0.156 4.156 5 C -0.032 4.032 6 C -0.151 4.151 7 C 0.097 3.903 8 C 0.551 3.449 9 O -0.579 6.579 10 N -0.684 5.684 11 C 0.231 3.769 12 H 0.035 0.965 13 C -0.140 4.140 14 C -0.529 4.529 15 H 0.053 0.947 16 C 0.034 3.966 17 N -0.928 5.928 18 Si 0.928 3.072 19 H -0.274 1.274 20 H -0.274 1.274 21 H -0.252 1.252 22 N -0.536 5.536 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.127 0.873 26 H 0.181 0.819 27 H 0.196 0.804 28 H 0.152 0.848 29 H 0.407 0.593 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.269 -10.994 4.204 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.116 3.884 4 C -0.177 4.177 5 C -0.057 4.057 6 C -0.173 4.173 7 C -0.039 4.039 8 C 0.337 3.663 9 O -0.460 6.460 10 N -0.331 5.331 11 C 0.128 3.872 12 H 0.053 0.947 13 C -0.199 4.199 14 C -0.568 4.568 15 H 0.071 0.929 16 C -0.167 4.167 17 N -0.566 5.566 18 Si 0.752 3.248 19 H -0.200 1.200 20 H -0.199 1.199 21 H -0.176 1.176 22 N -0.263 5.263 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.146 0.854 26 H 0.198 0.802 27 H 0.213 0.787 28 H 0.170 0.830 29 H 0.243 0.757 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.574 -10.442 4.110 19.196 hybrid contribution -0.103 0.595 -0.423 0.737 sum 15.471 -9.847 3.688 18.706 Atomic orbital electron populations 1.23037 0.76188 1.04761 1.01995 1.86222 1.23861 1.23745 1.87969 1.20261 0.90690 0.84176 0.93263 1.21742 0.90827 1.01481 1.03620 1.21920 1.02655 0.89115 0.92023 1.22203 0.92082 1.02367 1.00600 1.20693 0.93026 0.89465 1.00687 1.18480 0.82933 0.88024 0.76882 1.90694 1.74571 1.27333 1.53409 1.46369 1.05129 1.11474 1.70132 1.19028 0.88821 0.84709 0.94687 0.94663 1.22105 0.99627 1.00922 0.97251 1.21135 1.01835 1.01456 1.32331 0.92887 1.25626 0.95011 1.01599 0.94447 1.69977 1.12913 1.37249 1.36490 0.86031 0.78756 0.80177 0.79810 1.19972 1.19891 1.17645 1.67020 1.42207 0.98619 1.18461 0.92833 0.93265 0.85445 0.80202 0.78677 0.82978 0.75732 0.94195 0.92595 0.92721 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.38 113.37 1.18 1.94 16 2 O -0.31 -7.45 10.48 -89.84 -0.94 -8.39 16 3 C 0.30 7.69 7.49 84.94 0.64 8.33 16 4 C -0.16 -2.82 10.05 22.55 0.23 -2.59 16 5 C -0.03 -0.53 10.16 22.42 0.23 -0.31 16 6 C -0.15 -3.84 9.63 22.61 0.22 -3.63 16 7 C 0.10 3.24 6.75 41.84 0.28 3.53 16 8 C 0.55 23.01 7.78 86.88 0.68 23.69 16 9 O -0.58 -26.82 15.98 -3.78 -0.06 -26.88 16 10 N -0.68 -30.16 5.06 -448.69 -2.27 -32.43 16 11 C 0.23 11.38 2.22 44.25 0.10 11.48 16 12 H 0.04 1.86 4.73 -2.39 -0.01 1.85 16 13 C -0.14 -6.22 9.47 71.98 0.68 -5.54 16 14 C -0.53 -29.55 9.05 25.60 0.23 -29.32 16 15 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 16 C 0.03 1.93 5.47 84.65 0.46 2.40 16 17 N -0.93 -55.85 13.96 21.44 0.30 -55.55 16 18 Si 0.93 44.84 26.99 68.60 1.85 46.69 16 19 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.25 -11.82 6.82 99.48 0.68 -11.14 16 22 N -0.54 -16.97 8.39 -298.20 -2.50 -19.47 16 23 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 24 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 25 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 27 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 28 H 0.15 3.76 7.63 -2.91 -0.02 3.73 16 29 H 0.41 17.11 7.92 -92.70 -0.73 16.38 16 30 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -69.82 291.84 1.66 -68.16 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.37 Total: 17.90 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 4.92 Total: 9.99 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.47 Total: -107.46 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.00 Total: -35.28 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.85 Total: 46.69 kcal Total: -69.82 1.66 -68.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084186810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.845 kcal (2) G-P(sol) polarization free energy of solvation -69.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds