Wall clock time and date at job start Mon Mar 30 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.95332 * 2 1 4 4 C 1.38264 * 120.12523 * 179.97438 * 3 2 1 5 5 C 1.38329 * 120.02712 * 359.78645 * 4 3 2 6 6 F 1.35098 * 120.04508 * 180.23516 * 5 4 3 7 7 C 1.38908 * 119.90708 * 0.49108 * 5 4 3 8 8 O 1.35956 * 120.06101 * 179.77077 * 7 5 4 9 9 C 1.42906 * 116.99604 * 184.88203 * 8 7 5 10 10 C 1.52996 * 109.46911 * 175.73350 * 9 8 7 11 11 C 1.50700 * 115.55404 * 39.66395 * 10 9 8 12 12 H 1.08001 * 120.00423 * 264.99815 * 11 10 9 13 13 C 1.37882 * 119.99618 * 84.98950 * 11 10 9 14 14 N 1.31510 * 120.00166 * 352.24126 * 13 11 10 15 15 Si 1.86797 * 119.99906 * 172.23992 * 13 11 10 16 16 H 1.48497 * 109.47487 * 89.99785 * 15 13 11 17 17 H 1.48493 * 109.47301 * 210.00299 * 15 13 11 18 18 H 1.48502 * 109.46954 * 330.00199 * 15 13 11 19 19 C 1.53008 * 117.49720 * 253.95902 * 10 9 8 20 20 C 1.52999 * 59.99879 * 252.51083 * 19 10 9 21 21 C 1.38179 * 119.95057 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47272 * 269.98210 * 1 2 3 23 23 H 1.09006 * 109.47249 * 29.97441 * 1 2 3 24 24 H 1.08997 * 109.47343 * 149.97302 * 1 2 3 25 25 H 1.07995 * 119.94074 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.98335 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47174 * 55.73721 * 9 8 7 28 28 H 1.08994 * 109.47127 * 295.73466 * 9 8 7 29 29 H 0.97002 * 119.99929 * 185.04374 * 14 13 11 30 30 H 1.08998 * 117.50095 * 0.02562 * 19 10 9 31 31 H 1.09006 * 117.49736 * 145.02238 * 19 10 9 32 32 H 1.09004 * 117.50161 * 252.51354 * 20 19 10 33 33 H 1.08997 * 117.52230 * 107.48291 * 20 19 10 34 34 H 1.08000 * 120.02128 * 0.02666 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5799 1.2021 0.0005 5 6 4.2757 0.0065 0.0055 6 9 5.6267 0.0102 0.0109 7 6 3.5835 -1.1978 -0.0003 8 8 4.2642 -2.3746 -0.0001 9 6 3.4912 -3.5711 -0.1147 10 6 4.4285 -4.7771 -0.2035 11 6 5.6404 -4.7259 0.6908 12 1 6.5797 -4.3564 0.3068 13 6 5.5498 -5.1505 1.9995 14 7 4.3778 -5.4555 2.5123 15 14 7.0918 -5.2925 3.0442 16 1 7.3388 -4.0041 3.7400 17 1 6.9116 -6.3710 4.0488 18 1 8.2512 -5.6152 2.1740 19 6 4.5851 -5.4512 -1.5681 20 6 3.7954 -6.1467 -0.4574 21 6 2.1968 -1.1973 -0.0005 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3634 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.6556 2.1322 0.0004 26 1 4.1168 2.1391 0.0010 27 1 2.8764 -3.5219 -1.0134 28 1 2.8489 -3.6738 0.7599 29 1 4.3042 -5.6835 3.4522 30 1 4.0207 -5.0352 -2.4027 31 1 5.5649 -5.8576 -1.8193 32 1 4.2556 -7.0106 0.0222 33 1 2.7111 -6.1886 -0.5608 34 1 1.6564 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088257435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:19 Heat of formation + Delta-G solvation = -40.294668 kcal Electronic energy + Delta-G solvation = -18065.333965 eV Core-core repulsion = 15071.697681 eV Total energy + Delta-G solvation = -2993.636284 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -48.27754 -39.56285 -37.48274 -35.90972 -32.15011 -31.92450 -29.84169 -27.19346 -26.08701 -25.23565 -22.31433 -21.31995 -21.10752 -19.21209 -17.55734 -16.82287 -16.31118 -15.68385 -15.51632 -14.67108 -14.29069 -14.25559 -14.06357 -13.90357 -13.49706 -13.09498 -12.86092 -12.55460 -11.83566 -11.67986 -11.58321 -11.23537 -11.00837 -10.92834 -10.75125 -10.51350 -10.46003 -10.09267 -9.63630 -8.90871 -8.54898 -8.43874 -8.18432 -7.63999 -6.03173 -4.06151 1.36846 1.60325 3.33182 3.39132 3.43502 3.81534 3.83196 4.44017 4.65402 4.90254 4.92935 5.21123 5.25612 5.28833 5.37084 5.61219 5.61762 5.80664 5.86818 5.92213 6.10238 6.20776 6.26756 6.32015 6.43617 6.50429 6.61279 6.69157 6.72314 6.96320 7.04071 7.25784 7.39094 7.91860 8.07902 8.43252 8.93503 9.58443 11.06171 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.021668 B = 0.006933 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.942145 B = 4037.972607 C = 4526.883656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.115 4.115 5 C 0.050 3.950 6 F -0.134 7.134 7 C 0.122 3.878 8 O -0.272 6.272 9 C 0.105 3.895 10 C 0.039 3.961 11 C -0.481 4.481 12 H 0.063 0.937 13 C 0.071 3.929 14 N -0.885 5.885 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.209 4.209 20 C -0.148 4.148 21 C -0.193 4.193 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.334 9.809 -4.774 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.169 4.169 4 C -0.134 4.134 5 C 0.030 3.970 6 F -0.113 7.113 7 C 0.073 3.927 8 O -0.183 6.183 9 C 0.030 3.970 10 C 0.039 3.961 11 C -0.519 4.519 12 H 0.081 0.919 13 C -0.131 4.131 14 N -0.523 5.523 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.246 4.246 20 C -0.186 4.186 21 C -0.212 4.212 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.144 0.856 26 H 0.153 0.847 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.143 9.599 -4.602 12.819 hybrid contribution 0.751 -0.160 0.730 1.060 sum -6.392 9.439 -3.872 12.039 Atomic orbital electron populations 1.20777 0.91006 1.02666 1.02432 1.19707 0.96069 0.92429 0.97747 1.20606 0.92894 0.97572 1.05791 1.20880 0.94778 0.96055 1.01683 1.17023 0.77278 0.91998 1.10677 1.91487 1.28205 1.97212 1.94358 1.19311 0.91023 0.87193 0.95143 1.86379 1.35197 1.11353 1.85405 1.22545 0.93497 0.82528 0.98383 1.18718 0.96464 0.87676 0.93286 1.20297 0.94230 1.42109 0.95255 0.91924 1.24951 0.95991 0.94443 0.97762 1.69954 1.22864 1.46468 1.12967 0.86595 0.83665 0.77773 0.80107 1.20583 1.21220 1.19716 1.23114 1.00948 1.07893 0.92637 1.22546 0.96270 0.98240 1.01522 1.21104 0.92290 0.99270 1.08487 0.91003 0.91538 0.91468 0.85592 0.84722 0.94965 0.91664 0.93032 0.91545 0.90018 0.89488 0.91696 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.00 0.36 -0.79 16 2 C -0.06 -0.82 5.88 -104.64 -0.62 -1.43 16 3 C -0.15 -1.94 9.69 -39.56 -0.38 -2.33 16 4 C -0.12 -1.67 10.02 -39.54 -0.40 -2.07 16 5 C 0.05 0.93 7.31 -39.30 -0.29 0.65 16 6 F -0.13 -2.73 17.11 2.25 0.04 -2.69 16 7 C 0.12 2.45 6.69 -39.18 -0.26 2.19 16 8 O -0.27 -6.47 9.38 -19.60 -0.18 -6.65 16 9 C 0.11 2.39 4.82 37.16 0.18 2.57 16 10 C 0.04 0.97 1.77 -155.66 -0.28 0.70 16 11 C -0.48 -13.47 8.22 -34.44 -0.28 -13.75 16 12 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 13 C 0.07 1.98 5.38 -17.82 -0.10 1.89 16 14 N -0.89 -25.09 12.97 55.43 0.72 -24.37 16 15 Si 0.89 21.77 29.55 -169.99 -5.02 16.75 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.21 -4.54 9.88 -26.73 -0.26 -4.80 16 20 C -0.15 -3.38 9.51 -26.73 -0.25 -3.64 16 21 C -0.19 -3.24 8.69 -39.45 -0.34 -3.59 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 24 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 26 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 27 H 0.03 0.64 7.45 -51.93 -0.39 0.25 16 28 H 0.07 1.54 7.69 -51.93 -0.40 1.14 16 29 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 30 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 31 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.14 2.19 6.32 -52.49 -0.33 1.86 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -29.90 298.74 -7.33 -37.23 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.46 Total: -0.37 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -2.92 Total: -24.40 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.72 Total: -24.37 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.18 Total: -6.65 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.90 -7.33 -37.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088257435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.067 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds