Wall clock time and date at job start Mon Mar 30 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.95332 * 2 1 4 4 C 1.38264 * 120.12523 * 179.97438 * 3 2 1 5 5 C 1.38329 * 120.02712 * 359.78645 * 4 3 2 6 6 F 1.35098 * 120.04508 * 180.23516 * 5 4 3 7 7 C 1.38908 * 119.90708 * 0.49108 * 5 4 3 8 8 O 1.35956 * 120.06101 * 179.77077 * 7 5 4 9 9 C 1.42906 * 116.99604 * 184.88203 * 8 7 5 10 10 C 1.52996 * 109.46911 * 175.73350 * 9 8 7 11 11 C 1.50700 * 115.55404 * 39.66395 * 10 9 8 12 12 H 1.08001 * 120.00423 * 264.99815 * 11 10 9 13 13 C 1.37882 * 119.99618 * 84.98950 * 11 10 9 14 14 N 1.31510 * 120.00166 * 352.24126 * 13 11 10 15 15 Si 1.86797 * 119.99906 * 172.23992 * 13 11 10 16 16 H 1.48497 * 109.47487 * 89.99785 * 15 13 11 17 17 H 1.48493 * 109.47301 * 210.00299 * 15 13 11 18 18 H 1.48502 * 109.46954 * 330.00199 * 15 13 11 19 19 C 1.53008 * 117.49720 * 253.95902 * 10 9 8 20 20 C 1.52999 * 59.99879 * 252.51083 * 19 10 9 21 21 C 1.38179 * 119.95057 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47272 * 269.98210 * 1 2 3 23 23 H 1.09006 * 109.47249 * 29.97441 * 1 2 3 24 24 H 1.08997 * 109.47343 * 149.97302 * 1 2 3 25 25 H 1.07995 * 119.94074 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.98335 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47174 * 55.73721 * 9 8 7 28 28 H 1.08994 * 109.47127 * 295.73466 * 9 8 7 29 29 H 0.97002 * 119.99929 * 185.04374 * 14 13 11 30 30 H 1.08998 * 117.50095 * 0.02562 * 19 10 9 31 31 H 1.09006 * 117.49736 * 145.02238 * 19 10 9 32 32 H 1.09004 * 117.50161 * 252.51354 * 20 19 10 33 33 H 1.08997 * 117.52230 * 107.48291 * 20 19 10 34 34 H 1.08000 * 120.02128 * 0.02666 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5799 1.2021 0.0005 5 6 4.2757 0.0065 0.0055 6 9 5.6267 0.0102 0.0109 7 6 3.5835 -1.1978 -0.0003 8 8 4.2642 -2.3746 -0.0001 9 6 3.4912 -3.5711 -0.1147 10 6 4.4285 -4.7771 -0.2035 11 6 5.6404 -4.7259 0.6908 12 1 6.5797 -4.3564 0.3068 13 6 5.5498 -5.1505 1.9995 14 7 4.3778 -5.4555 2.5123 15 14 7.0918 -5.2925 3.0442 16 1 7.3388 -4.0041 3.7400 17 1 6.9116 -6.3710 4.0488 18 1 8.2512 -5.6152 2.1740 19 6 4.5851 -5.4512 -1.5681 20 6 3.7954 -6.1467 -0.4574 21 6 2.1968 -1.1973 -0.0005 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3634 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.6556 2.1322 0.0004 26 1 4.1168 2.1391 0.0010 27 1 2.8764 -3.5219 -1.0134 28 1 2.8489 -3.6738 0.7599 29 1 4.3042 -5.6835 3.4522 30 1 4.0207 -5.0352 -2.4027 31 1 5.5649 -5.8576 -1.8193 32 1 4.2556 -7.0106 0.0222 33 1 2.7111 -6.1886 -0.5608 34 1 1.6564 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088257435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:17 Heat of formation + Delta-G solvation = -56.261749 kcal Electronic energy + Delta-G solvation = -18066.026350 eV Core-core repulsion = 15071.697681 eV Total energy + Delta-G solvation = -2994.328669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.73712 -40.96049 -38.99592 -37.61152 -34.03497 -33.24013 -31.13765 -28.70613 -27.59868 -27.00610 -23.62569 -23.00723 -22.46434 -21.09262 -18.99021 -18.48870 -17.65622 -17.42797 -17.07934 -16.61428 -15.98160 -15.76779 -15.40023 -15.15986 -14.82048 -14.38201 -14.28772 -13.95472 -13.50489 -13.13606 -12.92900 -12.82741 -12.77529 -12.49733 -12.33966 -12.13587 -12.06173 -11.73609 -11.49536 -10.87003 -10.50500 -10.03976 -9.76608 -9.01765 -8.15023 -6.22763 0.14877 0.35498 1.35926 1.37311 1.47034 2.31294 2.41924 2.60998 3.12698 3.33967 3.41636 3.77324 3.86949 4.13336 4.21650 4.29058 4.35024 4.43733 4.53275 4.63713 4.76666 4.87701 4.88642 4.94962 4.97108 5.12072 5.15536 5.24557 5.31802 5.44186 5.55691 5.57268 5.73893 5.86706 6.31655 6.60922 6.79209 7.43252 8.93307 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.021668 B = 0.006933 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.942145 B = 4037.972607 C = 4526.883656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.053 4.053 3 C -0.133 4.133 4 C -0.105 4.105 5 C 0.013 3.987 6 F -0.155 7.155 7 C 0.080 3.920 8 O -0.313 6.313 9 C 0.121 3.879 10 C -0.001 4.001 11 C -0.498 4.498 12 H 0.041 0.959 13 C 0.028 3.972 14 N -0.906 5.906 15 Si 0.943 3.057 16 H -0.283 1.283 17 H -0.276 1.276 18 H -0.269 1.269 19 C -0.187 4.187 20 C -0.143 4.143 21 C -0.202 4.202 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.173 0.827 26 H 0.166 0.834 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.261 0.739 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.197 11.701 -5.311 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.151 4.151 4 C -0.123 4.123 5 C -0.007 4.007 6 F -0.134 7.134 7 C 0.033 3.967 8 O -0.226 6.226 9 C 0.046 3.954 10 C -0.002 4.002 11 C -0.536 4.536 12 H 0.059 0.941 13 C -0.172 4.172 14 N -0.544 5.544 15 Si 0.769 3.231 16 H -0.209 1.209 17 H -0.201 1.201 18 H -0.194 1.194 19 C -0.224 4.224 20 C -0.180 4.180 21 C -0.220 4.220 22 H 0.101 0.899 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.191 0.809 26 H 0.183 0.817 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.012 11.496 -5.148 15.488 hybrid contribution 1.248 -0.610 0.863 1.635 sum -7.764 10.886 -4.285 14.041 Atomic orbital electron populations 1.20884 0.87933 1.04350 1.03602 1.20216 0.98222 0.91523 0.95383 1.21188 0.92232 0.99078 1.02582 1.21304 0.95712 0.95556 0.99727 1.17588 0.76732 0.93233 1.13111 1.91418 1.29830 1.97364 1.94824 1.19727 0.92540 0.86319 0.98155 1.86283 1.36758 1.12596 1.86932 1.22249 0.92682 0.82006 0.98459 1.18906 0.96690 0.89481 0.95109 1.20477 0.94767 1.42025 0.96339 0.94050 1.25568 0.98465 0.94402 0.98737 1.70029 1.24081 1.47163 1.13111 0.85778 0.80833 0.77652 0.78804 1.20934 1.20101 1.19398 1.23125 1.00992 1.06002 0.92282 1.22469 0.97413 0.96428 1.01720 1.21254 0.91094 1.00820 1.08870 0.89883 0.88634 0.91139 0.80928 0.81656 0.92462 0.93808 0.93026 0.88607 0.90324 0.91540 0.89569 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 2 C -0.05 -1.31 5.88 -19.87 -0.12 -1.42 16 3 C -0.13 -2.87 9.69 22.28 0.22 -2.66 16 4 C -0.10 -2.79 10.02 22.30 0.22 -2.56 16 5 C 0.01 0.49 7.31 22.45 0.16 0.65 16 6 F -0.16 -6.60 17.11 44.97 0.77 -5.83 16 7 C 0.08 3.28 6.69 22.53 0.15 3.43 16 8 O -0.31 -15.55 9.38 -93.05 -0.87 -16.43 16 9 C 0.12 5.64 4.82 71.98 0.35 5.99 16 10 C 0.00 -0.07 1.77 -52.93 -0.09 -0.17 16 11 C -0.50 -28.91 8.22 25.60 0.21 -28.70 16 12 H 0.04 2.49 7.83 -2.91 -0.02 2.47 16 13 C 0.03 1.63 5.38 84.66 0.46 2.08 16 14 N -0.91 -52.55 12.97 21.45 0.28 -52.27 16 15 Si 0.94 45.75 29.55 68.60 2.03 47.78 16 16 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 19 C -0.19 -8.05 9.88 30.60 0.30 -7.75 16 20 C -0.14 -6.54 9.51 30.59 0.29 -6.25 16 21 C -0.20 -6.68 8.69 22.36 0.19 -6.49 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.09 1.04 8.08 -2.38 -0.02 1.02 16 24 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 25 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 26 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 27 H 0.06 2.29 7.45 -2.39 -0.02 2.27 16 28 H 0.04 2.16 7.69 -2.39 -0.02 2.14 16 29 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 30 H 0.10 3.53 8.08 -2.39 -0.02 3.51 16 31 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 32 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 33 H 0.09 3.51 8.14 -2.39 -0.02 3.50 16 34 H 0.13 4.35 6.32 -2.91 -0.02 4.33 16 Total: -1.00 -67.98 298.74 6.35 -61.63 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.09 Total: 10.04 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 3.06 Total: -44.93 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.28 Total: -52.27 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.87 Total: -16.43 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.77 Total: -5.83 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -67.98 6.35 -61.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088257435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.372 kcal (2) G-P(sol) polarization free energy of solvation -67.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds