Wall clock time and date at job start Mon Mar 30 2020 18:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 116.99803 * 2 1 4 4 O 1.21472 * 120.00152 * 359.97438 * 3 2 1 5 5 C 1.47728 * 120.00072 * 179.97438 * 3 2 1 6 6 C 1.40071 * 120.56532 * 179.97438 * 5 3 2 7 7 C 1.38342 * 118.28645 * 179.97438 * 6 5 3 8 8 C 1.38366 * 119.30631 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.45616 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47037 * 94.99867 * 9 8 7 11 11 C 1.46496 * 120.00135 * 269.99858 * 10 9 8 12 12 C 1.36938 * 119.99900 * 90.00493 * 10 9 8 13 13 H 1.08003 * 120.00359 * 22.33812 * 12 10 9 14 14 C 1.38809 * 120.00276 * 202.34581 * 12 10 9 15 15 N 1.31627 * 119.99603 * 11.32981 * 14 12 10 16 16 Si 1.86793 * 120.00396 * 191.32634 * 14 12 10 17 17 H 1.48506 * 109.47066 * 90.00164 * 16 14 12 18 18 H 1.48500 * 109.47710 * 209.99864 * 16 14 12 19 19 H 1.48504 * 109.47441 * 330.00336 * 16 14 12 20 20 N 1.31932 * 121.08830 * 0.25814 * 8 7 6 21 21 C 1.31683 * 121.88737 * 359.47831 * 20 8 7 22 22 H 1.09004 * 109.46749 * 60.00727 * 1 2 3 23 23 H 1.08992 * 109.46903 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47331 * 300.00703 * 1 2 3 25 25 H 1.08003 * 120.85916 * 359.95274 * 6 5 3 26 26 H 1.07995 * 120.35107 * 180.02562 * 7 6 5 27 27 H 1.09000 * 109.47235 * 215.00013 * 9 8 7 28 28 H 1.09000 * 109.47138 * 334.99971 * 9 8 7 29 29 H 1.09002 * 109.47183 * 94.22746 * 11 10 9 30 30 H 1.09002 * 109.47299 * 214.22015 * 11 10 9 31 31 H 1.08995 * 109.47238 * 334.22411 * 11 10 9 32 32 H 0.97001 * 119.99465 * 179.97438 * 15 14 12 33 33 H 1.08001 * 119.72578 * 180.26930 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.1869 2.5194 0.0000 7 6 5.5702 2.5369 0.0012 8 6 6.2627 1.3390 0.0033 9 6 7.7696 1.3540 0.0039 10 7 8.2585 1.2407 1.3803 11 6 8.4902 2.4480 2.1770 12 6 8.4989 0.0062 1.9219 13 1 8.6832 -0.8401 1.2767 14 6 8.5057 -0.1576 3.3003 15 7 8.0660 0.8076 4.0799 16 14 9.1387 -1.7476 4.0489 17 1 10.5966 -1.6281 4.3052 18 1 8.4311 -2.0087 5.3281 19 1 8.8919 -2.8702 3.1086 20 7 5.6255 0.1837 -0.0008 21 6 4.3105 0.1146 0.0031 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.6213 3.4395 -0.0016 26 1 6.1041 3.4756 0.0012 27 1 8.1416 0.5150 -0.5841 28 1 8.1238 2.2884 -0.4317 29 1 7.6039 2.6657 2.7730 30 1 9.3423 2.2891 2.8380 31 1 8.6969 3.2874 1.5132 32 1 8.0704 0.6929 5.0431 33 1 3.8249 -0.8500 0.0039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094761630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:26 Heat of formation + Delta-G solvation = -42.253832 kcal Electronic energy + Delta-G solvation = -17837.359538 eV Core-core repulsion = 14863.558259 eV Total energy + Delta-G solvation = -2973.801278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80505 -40.64580 -37.63111 -37.39413 -34.05224 -33.41793 -32.29218 -29.25066 -28.05301 -27.64764 -24.90972 -24.49973 -22.84697 -21.85931 -19.18422 -18.81936 -18.27109 -17.44105 -17.28229 -16.97461 -16.53078 -15.67053 -15.49197 -15.21642 -14.66947 -14.62311 -14.15758 -14.04370 -13.91059 -13.26939 -13.04896 -12.86196 -12.78721 -12.52466 -12.23636 -12.02111 -11.88574 -11.85360 -11.83300 -10.92980 -10.66825 -10.37108 -10.05928 -8.85999 -7.85320 -5.30912 -0.48813 0.32445 1.41063 1.47448 1.48261 1.56593 1.62520 2.50093 2.81391 3.28253 3.43809 3.71059 3.79613 3.84353 3.89215 4.08838 4.28858 4.33156 4.44294 4.64567 4.68913 4.77391 4.86769 4.95830 5.01877 5.12004 5.24002 5.34996 5.62848 5.66080 5.74417 6.30865 6.57414 7.06329 7.15505 7.82018 8.22801 9.17668 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.005775 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.181885 B = 4847.199011 C = 5412.337505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.526 3.474 4 O -0.534 6.534 5 C -0.214 4.214 6 C -0.013 4.013 7 C -0.179 4.179 8 C 0.145 3.855 9 C 0.182 3.818 10 N -0.600 5.600 11 C 0.174 3.826 12 C -0.246 4.246 13 H 0.072 0.928 14 C -0.053 4.053 15 N -0.938 5.938 16 Si 0.966 3.034 17 H -0.282 1.282 18 H -0.298 1.298 19 H -0.270 1.270 20 N -0.505 5.505 21 C 0.156 3.844 22 H 0.068 0.932 23 H 0.135 0.865 24 H 0.062 0.938 25 H 0.159 0.841 26 H 0.164 0.836 27 H 0.065 0.935 28 H 0.098 0.902 29 H -0.001 1.001 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.247 0.753 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 1.440 -9.877 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.372 3.628 4 O -0.425 6.425 5 C -0.219 4.219 6 C -0.039 4.039 7 C -0.199 4.199 8 C 0.006 3.994 9 C 0.055 3.945 10 N -0.320 5.320 11 C 0.029 3.971 12 C -0.376 4.376 13 H 0.089 0.911 14 C -0.247 4.247 15 N -0.585 5.585 16 Si 0.795 3.205 17 H -0.208 1.208 18 H -0.225 1.225 19 H -0.195 1.195 20 N -0.215 5.215 21 C -0.004 4.004 22 H 0.087 0.913 23 H 0.153 0.847 24 H 0.081 0.919 25 H 0.177 0.823 26 H 0.181 0.819 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.018 0.982 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.963 0.962 -9.701 13.939 hybrid contribution -0.663 0.017 1.017 1.215 sum -10.626 0.978 -8.684 13.758 Atomic orbital electron populations 1.23632 0.73891 1.06049 1.02806 1.86545 1.25622 1.31451 1.83770 1.20927 0.88538 0.81657 0.71719 1.90784 1.67136 1.36757 1.47850 1.20134 0.90382 0.96667 1.14674 1.21831 0.94485 0.97361 0.90194 1.22159 0.94058 1.00301 1.03424 1.23272 1.00315 0.88265 0.87564 1.20291 0.84991 1.02336 0.86903 1.44371 1.72817 1.03389 1.11464 1.20663 0.98003 0.85801 0.92630 1.19529 1.39715 0.88285 0.90077 0.91059 1.25782 1.01052 1.00554 0.97354 1.70237 1.50892 1.34236 1.03123 0.85268 0.77768 0.80092 0.77385 1.20842 1.22532 1.19500 1.67676 1.10038 1.30168 1.13631 1.23444 0.89080 0.98518 0.89310 0.91323 0.84663 0.91931 0.82337 0.81893 0.91709 0.88412 0.98227 0.95842 0.93768 0.94405 0.80470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.69 16 2 O -0.36 -9.11 9.84 -56.17 -0.55 -9.66 16 3 C 0.53 15.88 7.91 70.33 0.56 16.43 16 4 O -0.53 -17.68 16.21 19.93 0.32 -17.36 16 5 C -0.21 -6.89 5.89 -20.00 -0.12 -7.01 16 6 C -0.01 -0.41 9.72 22.74 0.22 -0.19 16 7 C -0.18 -5.69 9.70 22.32 0.22 -5.47 16 8 C 0.15 5.52 6.37 42.57 0.27 5.79 16 9 C 0.18 6.97 6.01 85.63 0.51 7.49 16 10 N -0.60 -29.01 2.91 -731.33 -2.13 -31.14 16 11 C 0.17 8.17 9.01 127.77 1.15 9.32 16 12 C -0.25 -13.36 9.67 84.03 0.81 -12.54 16 13 H 0.07 3.85 7.84 -2.91 -0.02 3.83 16 14 C -0.05 -2.95 5.13 84.86 0.44 -2.51 16 15 N -0.94 -55.52 10.58 21.65 0.23 -55.29 16 16 Si 0.97 45.59 29.57 68.60 2.03 47.62 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 18 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 N -0.51 -20.27 10.25 -182.77 -1.87 -22.15 16 21 C 0.16 5.34 10.79 85.04 0.92 6.26 16 22 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.16 4.16 7.74 -2.91 -0.02 4.13 16 26 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 27 H 0.06 2.50 8.03 -2.39 -0.02 2.48 16 28 H 0.10 2.98 7.76 -2.39 -0.02 2.96 16 29 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 30 H 0.02 1.20 7.19 -2.39 -0.02 1.18 16 31 H 0.04 1.66 7.84 -2.39 -0.02 1.64 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.18 5.18 7.62 -2.91 -0.02 5.16 16 Total: -1.00 -68.85 293.67 5.31 -63.54 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.11 Total: 5.18 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.18 Total: 19.26 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.77 Total: -108.57 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.23 Total: -27.02 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -68.85 5.31 -63.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094761630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.284 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds