Wall clock time and date at job start Mon Mar 30 2020 18:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.98197 * 124.71610 * 10 9 7 12 12 C 1.35240 * 107.86272 * 179.89938 * 11 10 9 13 13 C 1.40403 * 107.86459 * 0.36524 * 12 11 10 14 14 N 1.40202 * 125.97095 * 179.74164 * 13 12 11 15 15 C 1.34773 * 119.99643 * 0.02562 * 14 13 12 16 16 O 1.21595 * 120.00464 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99880 * 180.02562 * 15 14 13 18 18 C 1.46493 * 120.00217 * 179.97438 * 17 15 14 19 19 C 1.52997 * 117.50218 * 223.74630 * 18 17 15 20 20 C 1.52995 * 117.50033 * 155.08485 * 18 17 15 21 21 N 1.31210 * 108.05683 * 359.77201 * 13 12 11 22 22 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 24 24 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 25 25 H 1.08001 * 126.06357 * 0.02562 * 11 10 9 26 26 H 1.07996 * 126.06801 * 180.13733 * 12 11 10 27 27 H 0.96992 * 120.00103 * 180.02562 * 14 13 12 28 28 H 0.97005 * 119.99495 * 359.97438 * 17 15 14 29 29 H 1.09008 * 115.54850 * 9.41948 * 18 17 15 30 30 H 1.09006 * 117.49512 * 359.97438 * 19 18 17 31 31 H 1.08996 * 117.49947 * 145.02353 * 19 18 17 32 32 H 1.09001 * 117.50144 * 214.98258 * 20 18 17 33 33 H 1.09009 * 117.49940 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8468 -3.1129 -0.9209 12 6 5.0527 -4.4049 -0.5784 13 6 4.2961 -4.6708 0.5741 14 7 4.2270 -5.8978 1.2488 15 6 4.9295 -6.9556 0.7973 16 8 5.6229 -6.8460 -0.1955 17 7 4.8626 -8.1354 1.4456 18 6 5.6258 -9.2854 0.9546 19 6 4.9157 -10.6400 0.9157 20 6 5.9961 -10.3716 1.9663 21 7 3.6647 -3.5705 0.9089 22 1 -0.4850 0.8400 0.0004 23 1 3.8711 -0.6780 -0.9023 24 1 3.8785 -0.6824 0.8776 25 1 5.2842 -2.6014 -1.7656 26 1 5.6838 -5.1084 -1.1010 27 1 3.6736 -5.9854 2.0406 28 1 4.3091 -8.2229 2.2375 29 1 6.3428 -9.0701 0.1622 30 1 3.8807 -10.6756 1.2561 31 1 5.1658 -11.3161 0.0982 32 1 6.9565 -10.8713 1.8395 33 1 5.6722 -10.2304 2.9976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117954613.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:11 Heat of formation + Delta-G solvation = 89.475136 kcal Electronic energy + Delta-G solvation = -17283.877543 eV Core-core repulsion = 14348.081213 eV Total energy + Delta-G solvation = -2935.796330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78556 -39.70835 -37.41125 -34.71368 -33.44867 -32.70919 -31.03102 -29.35836 -27.09619 -23.50441 -22.68688 -22.29222 -21.29528 -20.47047 -19.82394 -18.13481 -17.11887 -16.76137 -16.26789 -15.43032 -15.18055 -14.77355 -14.42979 -14.26937 -13.62043 -13.16054 -12.86561 -12.55477 -12.32967 -12.17023 -11.90034 -11.67109 -11.12748 -10.88060 -10.79439 -10.50520 -10.15399 -9.99370 -9.76806 -9.51191 -8.98088 -8.75694 -8.15881 -7.47200 -6.22549 -4.24759 2.28037 2.57702 3.00447 3.16951 3.22155 3.24108 3.48604 3.58693 3.86560 4.21387 4.24021 4.49693 4.67116 4.71045 5.05485 5.31645 5.36616 5.52038 5.64196 5.72481 5.76443 6.14873 6.28981 6.39037 6.47820 6.56821 6.73192 6.95988 7.28942 7.43822 7.83385 7.88593 8.35108 8.54684 8.60246 8.87476 9.32510 10.90200 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.057824 B = 0.003828 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.114929 B = 7313.098377 C = 7578.119448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.278 3.722 14 N -0.642 5.642 15 C 0.718 3.282 16 O -0.566 6.566 17 N -0.716 5.716 18 C 0.105 3.895 19 C -0.197 4.197 20 C -0.192 4.192 21 N -0.300 5.300 22 H 0.268 0.732 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.169 0.831 26 H 0.163 0.837 27 H 0.408 0.592 28 H 0.398 0.602 29 H 0.141 0.859 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.217 -16.101 3.155 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.313 4.313 13 C 0.024 3.976 14 N -0.292 5.292 15 C 0.417 3.583 16 O -0.441 6.441 17 N -0.370 5.370 18 C -0.002 4.002 19 C -0.236 4.236 20 C -0.231 4.231 21 N -0.131 5.131 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.186 0.814 26 H 0.180 0.820 27 H 0.243 0.757 28 H 0.233 0.767 29 H 0.159 0.841 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.845 -15.176 3.059 18.902 hybrid contribution 0.132 0.433 0.315 0.551 sum 10.977 -14.743 3.373 18.687 Atomic orbital electron populations 1.69875 1.06164 1.27282 1.49250 1.24837 0.94874 0.98809 0.94276 0.86883 0.80245 0.83792 0.78986 1.19721 1.18930 1.20614 1.21123 0.87838 0.95703 1.52569 0.89650 1.20043 0.97409 0.73041 0.98181 1.48592 1.33006 1.10120 1.18532 1.22549 0.96034 0.94669 0.96521 1.21538 1.11567 0.96711 1.01524 1.18784 0.98732 0.85779 0.94331 1.41352 1.49337 1.07247 1.31290 1.15536 0.80311 0.79610 0.82847 1.90858 1.44013 1.82920 1.26339 1.44387 1.51503 1.09006 1.32088 1.21413 0.97968 0.80378 1.00454 1.23481 0.98086 0.99953 1.02045 1.23424 1.00523 1.02929 0.96218 1.77385 1.23921 0.95495 1.16276 0.92194 0.92888 0.94498 0.81394 0.81972 0.75726 0.76743 0.84138 0.88482 0.87940 0.87844 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.15 9.79 -34.44 -0.34 -15.49 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 9 C 0.23 5.53 5.33 -5.20 -0.03 5.51 16 10 N -0.32 -7.33 3.67 -62.56 -0.23 -7.56 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.58 9.61 -39.84 -0.38 -5.97 16 13 C 0.28 5.62 8.11 -154.36 -1.25 4.37 16 14 N -0.64 -10.06 5.46 -15.50 -0.08 -10.14 16 15 C 0.72 10.64 8.53 -86.91 -0.74 9.90 16 16 O -0.57 -10.21 13.04 5.28 0.07 -10.14 16 17 N -0.72 -7.36 5.57 -58.68 -0.33 -7.69 16 18 C 0.10 0.96 6.43 -67.94 -0.44 0.52 16 19 C -0.20 -1.38 10.46 -26.70 -0.28 -1.66 16 20 C -0.19 -1.24 10.46 -26.70 -0.28 -1.52 16 21 N -0.30 -6.93 12.42 31.44 0.39 -6.54 16 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 24 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 25 H 0.17 2.60 8.06 -52.49 -0.42 2.17 16 26 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 27 H 0.41 5.15 8.84 -40.82 -0.36 4.79 16 28 H 0.40 2.94 8.84 -40.82 -0.36 2.57 16 29 H 0.14 1.47 7.40 -51.92 -0.38 1.09 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 LS Contribution 290.62 15.07 4.38 4.38 Total: -1.00 -34.24 290.62 -7.61 -41.85 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.88 Total: 7.73 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -4.03 Total: -1.50 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.52 Total: -57.86 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.24 -7.61 -41.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117954613.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.323 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds