Wall clock time and date at job start Mon Mar 30 2020 18:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.98197 * 124.71610 * 10 9 7 12 12 C 1.35240 * 107.86272 * 179.89938 * 11 10 9 13 13 C 1.40403 * 107.86459 * 0.36524 * 12 11 10 14 14 N 1.40202 * 125.97095 * 179.74164 * 13 12 11 15 15 C 1.34773 * 119.99643 * 0.02562 * 14 13 12 16 16 O 1.21595 * 120.00464 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99880 * 180.02562 * 15 14 13 18 18 C 1.46493 * 120.00217 * 179.97438 * 17 15 14 19 19 C 1.52997 * 117.50218 * 223.74630 * 18 17 15 20 20 C 1.52995 * 117.50033 * 155.08485 * 18 17 15 21 21 N 1.31210 * 108.05683 * 359.77201 * 13 12 11 22 22 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 24 24 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 25 25 H 1.08001 * 126.06357 * 0.02562 * 11 10 9 26 26 H 1.07996 * 126.06801 * 180.13733 * 12 11 10 27 27 H 0.96992 * 120.00103 * 180.02562 * 14 13 12 28 28 H 0.97005 * 119.99495 * 359.97438 * 17 15 14 29 29 H 1.09008 * 115.54850 * 9.41948 * 18 17 15 30 30 H 1.09006 * 117.49512 * 359.97438 * 19 18 17 31 31 H 1.08996 * 117.49947 * 145.02353 * 19 18 17 32 32 H 1.09001 * 117.50144 * 214.98258 * 20 18 17 33 33 H 1.09009 * 117.49940 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8468 -3.1129 -0.9209 12 6 5.0527 -4.4049 -0.5784 13 6 4.2961 -4.6708 0.5741 14 7 4.2270 -5.8978 1.2488 15 6 4.9295 -6.9556 0.7973 16 8 5.6229 -6.8460 -0.1955 17 7 4.8626 -8.1354 1.4456 18 6 5.6258 -9.2854 0.9546 19 6 4.9157 -10.6400 0.9157 20 6 5.9961 -10.3716 1.9663 21 7 3.6647 -3.5705 0.9089 22 1 -0.4850 0.8400 0.0004 23 1 3.8711 -0.6780 -0.9023 24 1 3.8785 -0.6824 0.8776 25 1 5.2842 -2.6014 -1.7656 26 1 5.6838 -5.1084 -1.1010 27 1 3.6736 -5.9854 2.0406 28 1 4.3091 -8.2229 2.2375 29 1 6.3428 -9.0701 0.1622 30 1 3.8807 -10.6756 1.2561 31 1 5.1658 -11.3161 0.0982 32 1 6.9565 -10.8713 1.8395 33 1 5.6722 -10.2304 2.9976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117954613.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:10 Heat of formation + Delta-G solvation = 64.309990 kcal Electronic energy + Delta-G solvation = -17284.968786 eV Core-core repulsion = 14348.081213 eV Total energy + Delta-G solvation = -2936.887573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.24824 -40.95926 -38.22326 -36.17396 -35.23438 -33.95557 -32.70740 -30.95219 -28.93348 -24.98195 -23.77329 -23.21700 -22.37403 -21.85864 -21.29640 -19.34671 -19.08412 -18.22229 -17.46303 -16.71325 -16.65687 -16.09621 -15.72026 -15.43974 -15.14655 -14.78181 -14.43948 -13.87287 -13.80059 -13.62492 -13.01544 -12.69635 -12.51150 -12.34221 -12.15066 -11.81383 -11.66779 -11.47687 -11.40157 -11.15726 -10.86866 -9.89713 -9.69457 -9.03383 -8.36778 -6.47141 1.02348 1.09964 1.37799 1.40618 1.49869 1.66047 2.07387 2.29772 2.34173 2.95898 3.05388 3.08225 3.84083 3.92974 4.10342 4.11879 4.22691 4.61078 4.66986 4.80683 4.82131 4.89014 4.93854 5.07154 5.14535 5.25626 5.26188 5.55742 5.80286 5.92095 6.02313 6.42255 6.58103 6.71045 7.10851 7.16098 7.39168 8.80350 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.057824 B = 0.003828 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.114929 B = 7313.098377 C = 7578.119448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.229 1.229 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.062 3.938 12 C -0.294 4.294 13 C 0.283 3.717 14 N -0.637 5.637 15 C 0.715 3.285 16 O -0.600 6.600 17 N -0.695 5.695 18 C 0.070 3.930 19 C -0.187 4.187 20 C -0.169 4.169 21 N -0.350 5.350 22 H 0.272 0.728 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.211 0.789 26 H 0.168 0.832 27 H 0.420 0.580 28 H 0.414 0.586 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.269 -16.233 3.297 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.151 1.151 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.086 4.086 12 C -0.325 4.325 13 C 0.027 3.973 14 N -0.289 5.289 15 C 0.414 3.586 16 O -0.478 6.478 17 N -0.350 5.350 18 C -0.036 4.036 19 C -0.226 4.226 20 C -0.207 4.207 21 N -0.180 5.180 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.228 0.772 26 H 0.185 0.815 27 H 0.258 0.742 28 H 0.251 0.749 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.906 -15.393 3.238 20.347 hybrid contribution -0.538 0.236 0.285 0.653 sum 12.368 -15.157 3.523 19.878 Atomic orbital electron populations 1.70052 1.08608 1.28806 1.50739 1.25934 0.95777 1.03578 0.93211 0.85605 0.79908 0.77151 0.79627 1.19034 1.15149 1.20390 1.21251 0.90579 0.93725 1.52986 0.95589 1.19900 0.94088 0.74359 0.99700 1.48500 1.34500 1.09970 1.19749 1.23237 0.94355 0.94602 0.96385 1.21731 1.11935 0.97154 1.01678 1.19134 0.97370 0.86425 0.94362 1.41375 1.49752 1.06223 1.31532 1.15711 0.79837 0.80306 0.82732 1.90821 1.45423 1.83587 1.27966 1.44250 1.51114 1.07743 1.31879 1.21553 0.99159 0.80691 1.02175 1.23554 0.98629 0.97802 1.02578 1.23518 1.00970 0.99956 0.96278 1.77302 1.26059 0.96688 1.17980 0.91889 0.89846 0.93719 0.77224 0.81516 0.74248 0.74875 0.85962 0.87902 0.87091 0.86538 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.96 40.79 27.47 68.60 1.88 42.67 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.23 -8.40 6.54 99.48 0.65 -7.75 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.80 9.79 25.60 0.25 -31.55 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 9 C 0.24 11.13 5.33 85.63 0.46 11.59 16 10 N -0.35 -15.66 3.67 -351.85 -1.29 -16.95 16 11 C 0.06 2.33 11.43 83.52 0.96 3.29 16 12 C -0.29 -11.50 9.61 22.11 0.21 -11.29 16 13 C 0.28 11.53 8.11 133.31 1.08 12.61 16 14 N -0.64 -19.96 5.46 -321.22 -1.75 -21.71 16 15 C 0.71 20.97 8.53 179.05 1.53 22.49 16 16 O -0.60 -21.70 13.04 -4.02 -0.05 -21.75 16 17 N -0.70 -13.53 5.57 -457.81 -2.55 -16.08 16 18 C 0.07 1.19 6.43 44.99 0.29 1.48 16 19 C -0.19 -2.21 10.46 30.62 0.32 -1.89 16 20 C -0.17 -1.73 10.46 30.62 0.32 -1.41 16 21 N -0.35 -16.46 12.42 -54.43 -0.68 -17.13 16 22 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 23 H 0.08 3.37 7.12 -2.39 -0.02 3.35 16 24 H 0.04 2.00 7.57 -2.39 -0.02 1.99 16 25 H 0.21 5.79 8.06 -2.91 -0.02 5.76 16 26 H 0.17 6.39 5.91 -2.91 -0.02 6.38 16 27 H 0.42 10.59 8.84 -92.71 -0.82 9.77 16 28 H 0.41 5.39 8.84 -92.70 -0.82 4.57 16 29 H 0.12 2.56 7.40 -2.38 -0.02 2.54 16 30 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -77.90 290.62 1.20 -76.70 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.54 Total: 25.78 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.88 Total: 6.56 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -5.97 Total: -129.97 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.67 kcal Total: -77.90 1.20 -76.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117954613.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.014 kcal (2) G-P(sol) polarization free energy of solvation -77.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds