Wall clock time and date at job start Mon Mar 30 2020 18:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00154 * 2 1 4 4 O 1.20835 * 119.99521 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00504 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47195 * 179.97438 * 5 3 2 7 7 C 1.36940 * 119.99769 * 269.99646 * 6 5 3 8 8 H 1.07997 * 119.99620 * 142.78435 * 7 6 5 9 9 C 1.38809 * 120.00187 * 322.77620 * 7 6 5 10 10 N 1.31614 * 119.99744 * 158.82391 * 9 7 6 11 11 Si 1.86799 * 120.00024 * 338.82803 * 9 7 6 12 12 H 1.48499 * 109.47224 * 95.40704 * 11 9 7 13 13 H 1.48506 * 109.46823 * 215.40679 * 11 9 7 14 14 H 1.48499 * 109.47127 * 335.40605 * 11 9 7 15 15 C 1.46497 * 119.99863 * 90.00310 * 6 5 3 16 16 C 1.50699 * 109.47083 * 265.00623 * 15 6 5 17 17 C 1.38651 * 120.79358 * 272.33425 * 16 15 6 18 18 C 1.38196 * 119.16469 * 179.79434 * 17 16 15 19 19 N 1.31870 * 120.76611 * 0.48883 * 18 17 16 20 20 C 1.31867 * 121.72559 * 359.73613 * 19 18 17 21 21 C 1.38208 * 120.76209 * 0.02562 * 20 19 18 22 22 H 1.09000 * 109.46974 * 300.00214 * 1 2 3 23 23 H 1.09001 * 109.46898 * 60.00825 * 1 2 3 24 24 H 1.09004 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47225 * 59.99427 * 5 3 2 26 26 H 1.09007 * 109.46707 * 299.99600 * 5 3 2 27 27 H 0.97006 * 119.99946 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47637 * 25.00559 * 15 6 5 29 29 H 1.08996 * 109.47335 * 145.00956 * 15 6 5 30 30 H 1.08006 * 120.41063 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.61837 * 180.20604 * 18 17 16 32 32 H 1.07996 * 119.62031 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.41714 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1763 3.3356 -1.1865 8 1 3.8932 4.3734 -1.2825 9 6 4.7375 2.6666 -2.2654 10 7 4.5544 3.1189 -3.4877 11 14 5.7526 1.1241 -1.9826 12 1 4.8913 -0.0735 -2.1534 13 1 6.8659 1.0773 -2.9643 14 1 6.3075 1.1424 -0.6053 15 6 4.1888 3.3831 1.2682 16 6 2.9329 4.1281 1.6405 17 6 2.7104 5.4177 1.1823 18 6 1.5450 6.0681 1.5409 19 7 0.6555 5.4799 2.3167 20 6 0.8358 4.2564 2.7745 21 6 1.9749 3.5424 2.4539 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 3.9565 0.7806 -0.8891 26 1 3.9557 0.7811 0.8909 27 1 4.9463 2.6512 -4.2418 28 1 4.4279 2.6612 2.0491 29 1 5.0121 4.0893 1.1618 30 1 3.4374 5.9065 0.5507 31 1 1.3626 7.0715 1.1854 32 1 0.0847 3.8072 3.4073 33 1 2.1171 2.5409 2.8323 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177836559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:21 Heat of formation + Delta-G solvation = -14.517225 kcal Electronic energy + Delta-G solvation = -18813.628180 eV Core-core repulsion = 15841.029651 eV Total energy + Delta-G solvation = -2972.598529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.78365 -39.35420 -36.48949 -35.22984 -32.71499 -31.43760 -30.63474 -28.62473 -26.76776 -26.07093 -22.89736 -22.71627 -21.04905 -20.25679 -17.35640 -16.92094 -16.23334 -15.98390 -15.66352 -15.56078 -15.08520 -14.98622 -14.25288 -13.32816 -13.22293 -13.05826 -12.94130 -12.81818 -12.39367 -12.11208 -11.63854 -11.60061 -11.27060 -10.88114 -10.57880 -10.31947 -10.19129 -9.80982 -9.65401 -9.16742 -8.95117 -8.61706 -8.55042 -7.18257 -6.17042 -3.64260 1.73128 1.88950 3.04484 3.15163 3.32133 3.35802 3.38823 4.31119 4.34211 4.85475 4.94052 5.16668 5.26503 5.36788 5.44183 5.49776 5.60605 5.65860 5.74327 5.77873 5.88758 5.92660 6.01885 6.17555 6.31073 6.40832 6.60692 6.99536 7.06381 7.29464 7.75823 8.18271 8.48737 8.54915 8.76068 9.46664 9.78472 10.97012 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019268 B = 0.010087 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.874074 B = 2775.159298 C = 3624.392982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.379 6.379 3 C 0.420 3.580 4 O -0.480 6.480 5 C 0.138 3.862 6 N -0.564 5.564 7 C -0.274 4.274 8 H 0.084 0.916 9 C 0.040 3.960 10 N -0.886 5.886 11 Si 0.869 3.131 12 H -0.281 1.281 13 H -0.294 1.294 14 H -0.262 1.262 15 C 0.178 3.822 16 C -0.032 4.032 17 C -0.147 4.147 18 C 0.087 3.913 19 N -0.499 5.499 20 C 0.088 3.912 21 C -0.152 4.152 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.267 0.733 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -3.649 10.383 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.258 3.742 4 O -0.363 6.363 5 C 0.009 3.991 6 N -0.283 5.283 7 C -0.403 4.403 8 H 0.102 0.898 9 C -0.162 4.162 10 N -0.525 5.525 11 Si 0.698 3.302 12 H -0.209 1.209 13 H -0.221 1.221 14 H -0.186 1.186 15 C 0.053 3.947 16 C -0.042 4.042 17 C -0.168 4.168 18 C -0.069 4.069 19 N -0.209 5.209 20 C -0.069 4.069 21 C -0.173 4.173 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.633 -2.863 10.394 11.377 hybrid contribution 0.730 -1.370 -0.529 1.641 sum -2.903 -4.233 9.865 11.120 Atomic orbital electron populations 1.23038 0.78658 1.02271 1.01858 1.86608 1.21964 1.35923 1.85136 1.26407 0.94177 0.80994 0.72635 1.90630 1.66512 1.36038 1.43149 1.21374 0.85515 0.89294 1.02908 1.43917 1.74024 1.07527 1.02827 1.18739 1.36570 0.97822 0.87121 0.89847 1.25452 0.97603 0.98060 0.95101 1.69868 1.43448 1.41287 0.97906 0.87042 0.81121 0.83350 0.78658 1.20874 1.22149 1.18633 1.20056 0.92148 0.95044 0.87474 1.21188 0.97947 0.93610 0.91486 1.21987 0.99072 0.95664 1.00033 1.22554 0.90259 0.99543 0.94547 1.67533 1.30972 1.11282 1.11090 1.22406 0.95783 0.90792 0.97874 1.21755 0.95524 1.00016 1.00010 0.92778 0.92579 0.89300 0.88966 0.89744 0.92304 0.92527 0.90452 0.85105 0.83713 0.84193 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.38 -6.98 10.57 -39.26 -0.41 -7.40 16 3 C 0.42 8.81 8.03 36.00 0.29 9.10 16 4 O -0.48 -11.28 13.64 -18.76 -0.26 -11.53 16 5 C 0.14 2.85 5.12 -5.20 -0.03 2.82 16 6 N -0.56 -12.54 1.62 -175.99 -0.28 -12.82 16 7 C -0.27 -7.25 9.92 -15.06 -0.15 -7.40 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.04 1.09 5.33 -17.43 -0.09 1.00 16 10 N -0.89 -26.02 13.97 55.49 0.78 -25.25 16 11 Si 0.87 20.24 24.94 -169.99 -4.24 16.00 16 12 H -0.28 -6.38 6.69 56.52 0.38 -6.00 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 15 C 0.18 3.28 5.90 -5.20 -0.03 3.24 16 16 C -0.03 -0.58 4.60 -104.32 -0.48 -1.06 16 17 C -0.15 -2.71 9.83 -39.44 -0.39 -3.09 16 18 C 0.09 1.54 11.18 -17.55 -0.20 1.35 16 19 N -0.50 -9.17 10.36 -13.26 -0.14 -9.31 16 20 C 0.09 1.50 11.18 -17.55 -0.20 1.31 16 21 C -0.15 -2.62 8.26 -39.44 -0.33 -2.95 16 22 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 23 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 24 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.09 2.05 3.13 -51.93 -0.16 1.89 16 26 H 0.08 1.42 7.86 -51.92 -0.41 1.01 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 29 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 30 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 31 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 285.72 15.07 4.31 4.31 Total: -1.00 -32.02 285.72 -4.71 -36.73 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.93 Total: 3.35 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.53 Total: 5.91 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.35 Total: -47.38 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.67 Total: -18.93 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.24 Total: 16.00 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.02 -4.71 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177836559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.217 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds